genome.fa.s21.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  138  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42292216--42292590	178	2.1	178	79	5	384	27	20	21	31	1.98
42292659--42292990	177	1.9	178	85	4	465	27	23	19	29	1.98
42292837--42293125	133	2.2	133	87	0	425	26	22	20	30	1.98
42292657--42293303	310	2.1	311	85	1	886	27	21	19	31	1.98
42292657--42293036	177	2.1	176	81	4	424	27	23	20	29	1.98
42292914--42293475	177	3.2	177	80	5	511	27	20	19	32	1.97
42292216--42293346	44	25.5	44	66	8	353	27	21	19	31	1.98
42292837--42293169	133	2.5	133	85	0	362	27	22	20	30	1.98
42292964--42293395	89	4.9	86	68	11	248	27	20	20	31	1.97
42292837--42293218	133	2.9	133	82	2	311	26	21	20	30	1.98
42292657--42293573	310	3.0	310	80	4	831	27	21	19	31	1.98
42293318--42293566	128	1.9	128	86	3	349	26	22	20	30	1.98
42295314--42295343	16	1.9	16	93	6	53	0	0	13	86	0.57
42300376--42300637	125	2.1	127	80	3	296	34	16	14	34	1.89
42300806--42300852	24	2.0	24	91	0	76	63	0	6	29	1.19
42300936--42301228	3	97.3	3	66	17	65	60	4	7	27	1.44
42301133--42301213	34	2.4	33	82	10	92	60	6	6	27	1.45
42310912--42311003	48	1.9	48	93	0	157	29	7	18	44	1.77
42313446--42313578	66	2.0	67	89	2	207	19	18	9	51	1.73
42314103--42314544	225	2.0	225	100	0	884	37	15	16	30	1.90
42319498--42319543	17	2.8	17	90	3	67	41	30	15	13	1.85
42322644--42322819	95	1.9	95	91	0	289	35	12	4	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42324589--42324645	18	3.2	18	65	9	53	45	5	3	45	1.43
42324572--42324645	36	2.1	36	100	0	148	48	5	2	43	1.40
42325167--42325237	31	2.3	31	82	2	90	38	15	12	33	1.85
42333668--42333720	23	2.2	24	80	3	63	62	3	3	30	1.30
42338529--42338573	22	2.0	23	86	4	65	26	11	8	53	1.65
42338762--42338817	19	3.0	18	76	19	53	23	7	21	48	1.74
42342014--42342052	20	2.0	20	94	0	69	43	28	5	23	1.75
42342379--42342767	203	1.9	203	96	0	724	26	18	24	29	1.98
42346091--42346119	14	2.1	14	100	0	58	13	27	13	44	1.82
42355800--42355828	14	2.0	15	93	6	51	37	0	0	62	0.96
42356077--42356121	22	2.2	20	84	8	54	51	0	2	46	1.13
42356082--42356118	19	2.1	17	90	10	56	51	0	0	48	1.00
42367583--42367651	27	2.5	28	88	6	106	31	2	4	60	1.31
42370418--42370485	16	4.2	16	88	3	93	29	0	35	35	1.58
42370426--42370487	32	1.9	32	96	0	115	30	0	35	33	1.58
42370473--42370563	44	2.0	44	85	2	119	35	5	27	31	1.80
42370471--42370575	44	2.5	40	73	16	113	34	5	28	31	1.81
42370701--42370742	15	2.7	16	82	14	52	52	2	0	45	1.13
42370710--42370751	15	2.9	15	82	10	52	52	0	0	47	1.00
42376393--42376725	131	2.6	130	84	3	415	32	17	14	34	1.91
42380095--42380150	29	1.9	29	89	7	87	25	16	7	51	1.69
42386070--42386095	4	6.5	4	100	0	52	50	26	0	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42389133--42389178	24	1.9	24	90	0	74	36	2	0	60	1.09
42389151--42389188	17	2.2	17	86	9	51	44	2	0	52	1.14
42397460--42397502	20	2.2	20	91	8	70	76	4	2	16	1.05
42397556--42397789	113	2.1	113	87	5	339	50	7	6	35	1.57
42400929--42401280	183	2.0	174	84	7	456	34	17	22	26	1.95
42402927--42402994	9	7.6	9	78	6	57	44	16	7	32	1.75
42403013--42403053	6	6.5	6	83	10	55	17	0	4	78	0.93
42416286--42416332	20	2.5	18	83	16	60	59	2	2	36	1.21
42417252--42417311	30	2.0	31	86	3	86	48	8	8	35	1.63
42418057--42418105	23	2.0	24	84	15	64	34	0	4	61	1.15
42423297--42423355	30	2.0	30	100	0	118	40	3	22	33	1.70
42425317--42425383	21	3.0	23	76	21	72	64	0	5	29	1.17
42425298--42425413	29	4.0	28	70	20	78	64	0	7	27	1.21
42425350--42425395	15	2.9	15	90	6	65	67	0	6	26	1.15
42425375--42425415	14	2.8	15	75	20	50	60	0	9	29	1.28
42425350--42425410	15	4.1	14	80	16	54	67	0	6	26	1.15
42425388--42425452	20	3.1	20	68	25	53	64	3	6	26	1.32
42437531--42437564	12	2.8	12	90	0	50	67	0	0	32	0.91
42438196--42438250	27	2.1	26	83	10	67	29	3	7	60	1.41
42442547--42442581	17	2.1	16	89	5	52	37	0	2	60	1.12
42442492--42442614	63	1.9	64	93	1	212	35	3	4	56	1.37
42449767--42449847	27	3.0	26	83	10	83	54	2	2	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42450424--42450465	6	7.2	6	86	5	59	69	0	0	30	0.89
42450424--42450465	17	2.4	17	88	4	57	69	0	0	30	0.89
42450401--42450485	11	8.0	11	70	12	52	61	1	1	36	1.12
42470423--42470484	30	2.1	30	84	0	79	59	14	1	24	1.44
42470462--42470492	12	2.7	11	90	9	53	70	6	3	19	1.22
42472171--42472232	21	3.0	21	86	4	83	14	24	20	40	1.90
42476622--42476667	23	2.0	23	84	12	60	45	10	6	36	1.65
42476629--42476673	23	2.0	23	82	8	56	40	13	8	37	1.76
42486157--42486222	28	2.4	26	79	16	71	27	1	3	68	1.13
42487873--42487921	12	4.2	11	79	7	53	16	2	6	75	1.09
42487873--42487921	18	2.7	18	85	14	66	16	2	6	75	1.09
42494533--42494560	11	2.5	11	100	0	56	60	0	0	39	0.97
42500029--42500111	23	3.8	22	73	17	66	37	0	1	61	1.04
42505366--42505406	20	2.0	20	95	0	73	29	4	34	31	1.79
42509124--42509160	17	2.2	17	95	0	65	59	10	5	24	1.52
42520129--42520210	44	1.9	41	82	7	101	32	25	24	17	1.96
42520124--42520211	21	4.1	22	72	10	65	35	23	23	17	1.95
42520416--42520499	28	3.0	28	87	1	123	46	29	3	20	1.67
42531455--42531550	40	2.5	38	78	6	111	35	36	13	14	1.86
42531865--42531920	27	2.1	27	96	0	103	41	19	12	26	1.87
42536361--42536449	43	2.0	44	97	2	171	24	15	15	43	1.86
42540214--42540243	3	9.7	3	92	7	51	63	3	0	33	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42545104--42545137	17	2.0	17	94	0	59	44	50	0	5	1.26
42545385--42545458	20	3.9	19	69	11	62	56	6	1	35	1.34
42547756--42547808	13	4.1	13	80	4	63	37	22	9	30	1.86
42549181--42549206	3	8.7	3	100	0	52	69	0	0	30	0.89
42554854--42554889	12	3.0	12	91	0	63	30	25	2	41	1.69
42568707--42568736	15	1.9	16	93	6	53	63	0	0	36	0.95
42570268--42570307	4	10.8	4	89	5	50	70	0	2	27	1.01
42571895--42572796	45	19.9	44	67	18	194	29	21	16	32	1.95
42571904--42572292	139	2.8	138	81	6	394	29	22	17	30	1.96
42572139--42572555	179	2.3	179	89	0	636	29	20	16	32	1.95
42572449--42572651	93	2.2	93	91	0	334	29	19	16	34	1.94
42573627--42573682	8	6.8	8	78	13	60	0	14	3	82	0.81
42573637--42573684	13	3.5	13	80	11	51	0	14	4	81	0.84
42573629--42573684	29	1.9	29	85	7	78	0	14	3	82	0.81
42576886--42577078	35	5.5	35	86	6	268	30	11	24	33	1.90
42578156--42578200	16	2.6	17	82	13	56	42	8	20	28	1.82
42580011--42580044	18	1.9	17	88	5	50	38	2	2	55	1.30
42580627--42580661	13	2.9	12	91	8	54	77	0	0	22	0.78
42580650--42580697	21	2.3	20	83	16	62	62	6	6	25	1.42
42580936--42581009	3	23.7	3	77	13	69	60	1	9	28	1.36
42587043--42587076	7	5.1	7	86	13	54	32	0	0	67	0.91
42587043--42587076	12	2.6	14	90	9	54	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42590288--42590336	6	7.7	6	86	6	53	16	0	6	77	0.96
42590288--42590327	21	1.9	21	90	10	64	17	0	7	75	1.03
42590288--42590338	27	1.9	26	88	11	77	15	0	5	78	0.93
42590283--42590338	26	2.1	27	84	12	73	14	1	5	78	1.00
42597611--42597642	6	5.5	6	96	3	57	87	0	0	12	0.54
42602346--42602388	16	2.6	17	88	3	61	39	2	0	58	1.11
42605086--42605110	13	1.9	13	100	0	50	32	0	4	64	1.12
42605886--42605929	22	2.0	22	82	8	54	59	2	0	38	1.10
42607076--42607141	22	3.0	23	78	13	75	39	1	1	57	1.17
42610782--42610824	22	2.0	22	86	9	61	27	9	0	62	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182