genome.fa.s21.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  40  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12733711--12733818	15	7.2	15	69	12	87	25	23	7	43	1.79
12733701--12733824	30	4.1	30	95	1	212	25	25	6	42	1.78
12748809--12749300	144	3.4	144	82	1	628	32	21	20	25	1.97
12749311--12750556	210	5.9	210	84	2	1617	33	18	17	30	1.93
12753308--12753339	13	2.5	13	100	0	64	53	0	37	9	1.34
12756250--12756279	15	2.1	14	93	6	51	90	0	0	10	0.47
12756890--12757028	45	3.1	45	89	4	203	19	19	20	40	1.92
12757006--12757048	6	6.8	6	83	2	50	18	20	16	44	1.87
12762067--12762125	11	5.4	11	79	0	55	13	6	13	66	1.44
12763626--12763692	31	2.2	31	86	2	91	47	2	1	47	1.26
12768283--12768684	199	2.0	200	95	0	716	27	26	16	29	1.97
12768886--12769966	540	2.0	539	96	0	1991	28	24	15	31	1.96
12776375--12776849	237	2.0	237	98	0	923	25	21	26	26	2.00
12786077--12786146	31	2.3	31	80	5	79	21	10	18	50	1.76
12787852--12787876	12	2.1	12	100	0	50	44	8	0	48	1.32
12791607--12791653	13	3.8	12	80	13	51	65	2	0	31	1.04
12791598--12791653	6	8.8	6	79	11	58	67	1	0	30	1.01
12791598--12791653	19	2.9	20	79	15	64	67	1	0	30	1.01
12794890--12794929	20	2.0	21	85	5	55	30	10	15	45	1.78
12795849--12795918	32	2.2	32	87	5	97	38	21	4	35	1.73
12795861--12795926	32	2.1	32	100	0	132	37	21	3	37	1.69
12806896--12806929	10	3.4	10	92	8	52	82	0	0	17	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12816265--12816311	21	2.2	21	77	7	51	27	2	21	48	1.61
12818734--12818769	17	2.1	18	89	5	56	52	2	2	41	1.30
12830853--12830909	24	2.3	25	80	14	82	31	17	5	45	1.71
12831930--12832146	83	2.6	83	79	3	224	42	18	8	29	1.81
12833150--12833184	18	2.1	17	89	10	54	34	0	31	34	1.58
12833146--12833184	18	2.1	18	85	9	51	35	0	28	35	1.58
12834594--12834640	24	2.0	24	82	0	58	23	12	25	38	1.90
12850304--12850337	15	2.3	15	89	0	50	17	14	8	58	1.61
12851805--12851862	20	2.9	20	79	7	73	32	13	24	29	1.94
12857680--12857731	22	2.4	22	83	0	68	38	0	5	55	1.24
12859561--12859595	17	2.1	17	89	10	54	65	2	8	22	1.34
12864638--12864693	29	1.9	29	92	0	94	30	19	19	30	1.97
12865553--12865590	19	2.0	20	89	5	60	42	0	10	47	1.38
12874102--12874131	13	2.3	13	100	0	60	33	10	16	40	1.82
12878014--12878051	14	2.8	13	88	11	58	60	0	39	0	0.97
12878210--12878296	41	2.0	47	76	14	71	34	0	12	52	1.39
12878251--12878552	96	3.4	84	79	16	242	32	0	12	54	1.43
12878360--12878688	27	13.8	25	74	20	264	32	0	12	54	1.45
12878399--12878455	21	2.9	18	78	19	60	31	1	12	54	1.48
12878350--12878735	48	8.1	48	78	13	397	32	0	13	53	1.46
12878350--12878593	97	2.5	97	93	2	429	32	0	11	54	1.43
12878495--12878667	66	2.6	66	87	5	231	33	1	12	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12878480--12878688	115	1.8	115	98	0	409	33	0	13	52	1.47
12878215--12878612	19	22.2	19	66	24	163	32	0	12	54	1.42
12878480--12878735	115	2.1	114	90	5	368	32	0	14	51	1.48
12878884--12878965	38	2.2	38	97	0	155	54	3	2	39	1.31
12879002--12879043	16	2.7	15	85	7	57	38	2	2	57	1.25
12883541--12883582	16	2.7	15	85	7	57	38	2	2	57	1.25
12885208--12885257	6	8.3	6	84	0	64	30	38	32	0	1.58
12888599--12888643	22	2.1	21	91	4	72	0	33	2	64	1.06
12888601--12888652	22	2.8	18	75	25	54	0	38	1	59	1.08
12888730--12888836	27	4.0	27	88	0	151	26	36	18	18	1.94
12900654--12900740	30	2.9	30	85	0	120	36	25	3	34	1.73
12901048--12901122	28	2.6	28	81	12	82	76	6	16	1	1.07
12901236--12901284	12	4.1	11	80	15	53	75	0	24	0	0.80
12901537--12901572	11	3.4	11	88	7	56	88	0	11	0	0.50
12901536--12901572	10	3.6	10	89	7	56	86	0	13	0	0.57
12902075--12902298	18	12.8	17	76	12	147	33	12	11	42	1.79
12902078--12902291	35	6.1	34	80	13	206	33	12	11	42	1.78
12906029--12906101	36	2.0	36	100	0	146	31	13	10	43	1.79
12907967--12908055	44	2.0	44	95	0	160	37	8	23	30	1.86
12910539--12911380	77	10.9	77	84	7	967	26	15	20	36	1.93
12910541--12911380	229	3.6	229	84	7	1047	27	15	20	36	1.93
12910543--12911359	156	5.3	153	86	5	1015	27	15	20	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12912019--12912057	17	2.3	17	86	0	51	53	0	46	0	1.00
12912111--12912150	14	2.9	13	85	7	53	72	0	27	0	0.85
12912107--12912158	17	3.1	17	77	8	52	69	0	30	0	0.89
12912328--12912404	25	3.0	24	77	15	73	24	42	27	5	1.75
12912414--12912465	12	4.5	11	81	18	61	82	0	17	0	0.66
12912403--12912465	22	2.9	22	86	6	76	80	0	19	0	0.70
12912415--12912447	14	2.3	14	94	5	57	87	0	12	0	0.53
12912415--12912466	9	5.8	9	78	17	54	82	0	17	0	0.66
12912572--12912623	26	2.0	26	84	3	68	26	5	7	59	1.48
12912958--12912998	16	2.5	17	92	4	66	46	12	7	34	1.69
12912960--12913191	18	13.1	18	72	15	103	34	12	10	42	1.77
12912970--12913175	35	5.9	35	75	7	168	32	12	11	43	1.79
12914240--12914400	55	3.0	55	87	1	236	23	9	16	49	1.76
12919675--12919729	27	2.0	27	100	0	110	38	7	25	29	1.83
12922005--12922142	43	3.2	40	81	13	136	29	18	24	27	1.98
12922022--12922148	43	3.0	43	87	7	163	31	18	24	25	1.97
12931715--12931760	22	2.1	22	88	8	67	47	17	10	23	1.79
12935077--12935116	13	3.1	13	85	0	62	35	27	7	30	1.84
12935776--12935810	15	2.3	15	85	0	52	68	0	0	31	0.90
12936441--12936489	23	2.1	23	100	0	98	26	26	20	26	1.99
12937736--12937776	15	2.9	14	77	22	50	34	2	0	63	1.08
12939507--12939532	12	2.2	12	100	0	52	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12939681--12939749	3	22.0	3	84	11	77	65	1	4	28	1.21
12941900--12941933	11	3.1	11	86	0	50	14	35	2	47	1.60
12941900--12941949	22	2.3	22	80	13	59	20	34	2	44	1.63
12943819--12943861	18	2.4	18	92	0	68	23	25	6	44	1.78
12944102--12944149	21	2.3	21	82	7	62	35	35	18	10	1.85
12944116--12944157	21	2.0	21	85	0	57	33	40	19	7	1.78
12945500--12945548	25	2.0	25	88	8	73	46	0	2	51	1.12
12949371--12949424	21	2.5	22	87	3	74	18	1	27	51	1.56
12950240--12950294	23	2.4	23	81	6	67	72	5	0	21	1.04
12951711--12951746	15	2.3	16	90	4	56	61	0	2	36	1.11
12952542--12952604	16	3.9	16	78	12	74	41	0	9	49	1.35
12952606--12952735	30	4.4	29	69	11	77	47	5	4	42	1.47
12952604--12952891	94	3.1	92	90	4	447	46	4	5	43	1.47
12953979--12954055	19	4.4	17	78	15	86	33	5	15	45	1.69
12953989--12954060	19	3.9	19	79	15	89	31	5	16	45	1.70
12953989--12954062	35	2.0	36	87	10	105	31	5	17	45	1.71
12954827--12955564	367	2.0	367	97	0	1388	40	8	7	43	1.65
12955248--12956007	420	1.8	417	94	1	1229	39	8	8	44	1.65
12956146--12956662	9	60.4	9	64	19	110	43	18	2	35	1.63
12956177--12956239	22	2.9	22	83	6	83	44	23	0	31	1.54
12956498--12956649	16	10.0	16	65	21	67	46	17	1	34	1.59
12956499--12956557	26	2.3	26	82	2	66	44	16	3	35	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12956258--12956657	25	15.8	25	70	11	190	44	17	2	36	1.62
12957344--12957546	9	23.7	9	66	20	80	44	18	2	34	1.65
12957382--12957533	16	10.0	16	65	21	67	46	17	1	34	1.59
12957383--12957441	26	2.3	26	82	2	66	44	16	3	35	1.65
12957218--12957541	25	12.8	25	69	13	146	44	17	2	35	1.64
12961312--12961496	94	2.0	94	97	0	352	30	14	16	38	1.88
12961484--12961804	161	2.0	161	92	1	536	28	13	24	33	1.93
12966658--12966683	5	5.2	5	100	0	52	57	0	0	42	0.98
12970492--12970544	23	2.3	23	83	6	63	52	3	1	41	1.30
12970799--12970837	17	2.3	17	86	0	51	28	7	2	61	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182