genome.fa.s21.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  58  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17801906--17801944	11	3.4	11	80	13	51	51	0	2	46	1.14
17801924--17801961	14	2.4	17	87	12	55	47	0	0	52	1.00
17802191--17802215	6	4.2	6	100	0	50	84	0	16	0	0.63
17803069--17803132	21	3.0	22	73	17	71	20	17	25	37	1.93
17805335--17805384	25	2.0	26	84	4	66	18	10	10	62	1.54
17821425--17821546	3	40.7	3	100	0	244	67	0	32	0	0.91
17821983--17822044	20	3.1	21	82	11	60	48	1	0	50	1.10
17822581--17822634	16	3.4	16	85	10	74	48	1	24	25	1.61
17822589--17822642	16	3.4	16	82	10	65	46	3	22	27	1.69
17822798--17822881	43	1.9	45	83	9	111	51	2	1	45	1.22
17838225--17838277	25	2.1	27	89	10	85	18	0	24	56	1.42
17849971--17850013	12	3.7	12	84	9	54	67	0	2	30	1.03
17850055--17850356	103	2.9	103	95	0	532	46	12	9	31	1.73
17854800--17854866	33	2.0	33	94	0	116	22	26	2	47	1.65
17863071--17863217	79	1.9	78	81	7	181	29	7	3	59	1.41
17863299--17863363	3	21.0	3	72	12	51	29	7	1	61	1.33
17865853--17865929	37	2.1	37	95	0	136	27	20	31	20	1.98
17865890--17866045	50	3.1	50	85	0	204	25	21	30	21	1.98
17865815--17865979	87	1.9	85	90	2	258	25	22	31	20	1.98
17877993--17878564	44	12.9	44	73	7	370	30	16	23	29	1.96
17877993--17878341	133	2.6	134	81	3	420	30	18	22	28	1.97
17877993--17878567	89	6.5	88	72	8	353	30	16	23	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17877993--17878468	133	3.6	134	76	4	412	30	16	23	29	1.96
17878495--17878613	49	2.5	47	77	5	125	35	12	22	29	1.91
17878771--17878910	44	3.2	44	78	4	131	29	22	22	26	1.99
17880185--17880331	79	1.9	78	81	7	181	29	7	3	59	1.41
17880413--17880477	3	21.0	3	72	12	51	29	9	1	60	1.37
17882442--17882489	20	2.4	20	78	0	51	50	10	12	27	1.73
17891116--17891176	32	1.9	32	89	0	95	39	8	1	50	1.42
17891278--17891349	22	3.5	21	75	11	85	45	1	1	51	1.18
17891278--17891349	21	3.5	21	73	17	69	45	1	1	51	1.18
17894956--17895020	26	2.5	26	76	19	64	44	1	3	50	1.26
17895143--17895181	21	2.0	18	85	14	51	35	10	2	51	1.50
17896380--17896437	30	1.9	30	85	3	80	50	17	6	25	1.71
17900146--17900219	35	2.1	35	87	0	103	48	20	6	24	1.73
17909713--17909751	21	1.9	21	85	15	55	51	15	15	17	1.77
17911189--17911532	51	6.8	51	79	7	324	29	14	25	30	1.95
17911189--17911526	102	3.3	102	87	2	423	29	14	25	30	1.95
17911723--17911795	38	1.9	37	86	8	103	42	1	23	32	1.63
17918423--17918449	3	9.0	3	100	0	54	66	0	0	33	0.92
17933772--17933819	10	4.6	10	82	10	60	50	6	2	41	1.39
17933782--17933828	22	2.1	23	96	4	87	53	4	2	40	1.32
17933771--17933836	32	2.1	32	88	5	98	53	4	3	39	1.37
17945975--17946043	35	1.9	36	85	2	95	36	4	28	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17949302--17949350	20	2.3	22	82	6	66	55	0	0	44	0.99
17950374--17950417	24	1.9	23	86	9	63	54	0	0	45	0.99
17950719--17950820	28	3.5	29	82	9	102	54	0	2	42	1.15
17950760--17950829	31	2.3	31	92	0	113	51	1	7	40	1.38
17950637--17950950	158	2.0	157	93	0	538	51	3	4	40	1.39
17950772--17950838	31	2.2	31	86	0	89	52	2	7	37	1.45
17950876--17950944	28	2.5	27	79	9	68	55	0	1	43	1.08
17954606--17954644	21	1.9	21	85	15	55	51	15	15	17	1.77
17956081--17956424	51	6.8	51	79	7	324	29	14	25	30	1.95
17956081--17956418	102	3.3	102	87	2	423	29	14	25	30	1.95
17956615--17956687	38	1.9	37	86	8	103	42	1	23	32	1.63
17961373--17961560	51	3.7	51	81	4	227	24	13	27	35	1.92
17961375--17961568	102	1.9	102	87	2	282	24	13	27	34	1.93
17965498--17965552	27	2.0	27	96	0	101	38	14	16	30	1.89
17969695--17969744	26	1.9	26	100	0	100	58	2	16	24	1.49
17977221--17977268	19	2.6	19	77	6	55	22	33	41	2	1.66
17979145--17979206	31	2.0	31	100	0	124	25	16	6	51	1.68
17984446--17984529	6	14.5	6	85	9	97	16	1	2	79	0.90
17984432--17984528	44	2.2	45	85	9	128	18	1	2	78	0.91
17984440--17984555	11	9.9	11	75	22	103	18	1	3	75	1.03
17984432--17984503	5	13.6	5	91	5	83	19	0	0	80	0.71
17987895--17987958	33	1.9	33	87	6	94	45	3	4	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17990082--17990172	28	3.3	27	76	14	78	59	1	5	34	1.28
17990082--17990172	29	3.3	27	69	17	69	59	1	5	34	1.28
17998627--17998669	14	3.1	14	83	3	52	53	0	2	44	1.13
17998913--17998945	17	1.9	17	93	0	57	48	9	9	33	1.66
18008647--18008684	3	12.7	3	100	0	76	0	34	0	65	0.93
18009500--18009570	19	3.7	19	78	10	65	40	4	0	54	1.20
18009684--18009760	19	4.3	16	75	21	57	32	2	1	63	1.16
18009679--18009760	9	8.9	9	72	22	64	34	2	1	62	1.16
18009680--18009761	17	4.6	19	74	19	70	34	2	1	62	1.16
18019001--18019461	230	2.0	230	95	0	823	34	19	16	29	1.93
18019721--18019749	5	5.8	5	100	0	58	79	20	0	0	0.74
18029467--18029531	20	3.2	21	73	8	62	46	1	4	47	1.32
18030363--18030396	14	2.5	13	86	9	50	44	2	8	44	1.50
18031177--18031225	24	2.0	25	84	11	66	32	0	4	63	1.13
18032830--18032905	23	3.3	23	88	0	116	21	21	27	30	1.98
18043926--18044458	44	11.9	45	73	18	411	27	21	19	32	1.97
18043956--18044027	35	2.1	35	100	0	144	27	18	19	34	1.95
18044028--18044517	94	5.3	94	81	7	518	26	21	20	31	1.97
18043991--18044504	182	2.8	181	85	4	665	26	21	19	31	1.97
18044005--18044458	138	3.3	136	75	13	451	26	21	19	32	1.97
18054960--18055031	5	14.8	5	74	21	64	38	0	4	56	1.18
18054989--18055031	19	2.3	19	92	8	70	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18055036--18055075	18	2.2	19	90	4	64	80	2	15	2	0.93
18055945--18056078	44	3.0	45	83	4	162	35	13	23	27	1.93
18066327--18066747	132	3.2	132	86	0	547	25	24	19	30	1.98
18066475--18066683	44	4.8	44	71	9	138	26	26	18	28	1.98
18066738--18067456	45	16.0	45	76	7	617	29	24	17	29	1.97
18066738--18067456	135	5.3	135	80	5	706	29	24	17	29	1.97
18073774--18073813	16	2.4	17	87	4	55	75	2	7	15	1.14
18076026--18076067	22	1.9	22	90	0	66	33	2	0	64	1.07
18078576--18078601	13	2.0	13	100	0	52	15	0	0	84	0.62
18080733--18080836	13	8.2	13	76	10	90	50	4	5	38	1.47
18080733--18080800	27	2.6	27	80	2	66	51	4	5	38	1.46
18080772--18080838	35	1.9	35	90	0	107	46	5	7	40	1.57
18082712--18082750	14	2.9	14	88	3	53	41	0	48	10	1.37
18082724--18082752	7	4.1	7	100	0	58	41	0	44	13	1.44
18082727--18082770	14	3.1	14	86	0	52	52	0	27	20	1.47
18083382--18083406	13	1.9	13	100	0	50	32	8	8	52	1.60
18096200--18096296	49	2.0	48	100	0	185	35	22	12	28	1.91
18097270--18097551	41	6.6	41	72	10	165	31	19	20	28	1.97
18097270--18097591	45	7.5	43	70	13	162	31	18	20	29	1.96
18097256--18097595	128	2.6	129	87	2	479	33	18	20	28	1.96
18099590--18099614	9	2.8	9	100	0	50	8	0	0	92	0.40
18100667--18101014	44	7.8	44	69	11	172	31	18	22	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18100646--18100818	90	2.0	88	85	5	233	28	20	24	25	1.99
18100778--18101121	178	1.9	177	85	1	474	31	18	22	27	1.97
18100880--18101122	44	5.5	44	69	5	148	32	16	23	27	1.96
18100913--18101600	219	3.1	217	85	6	872	28	19	24	27	1.99
18101351--18101620	44	6.2	44	71	12	164	27	20	25	27	1.99
18101655--18101811	50	3.1	49	75	3	143	33	22	19	24	1.97
18103279--18103336	6	9.2	6	76	10	53	17	5	3	74	1.15
18103362--18103404	3	14.3	3	100	0	86	32	0	0	67	0.91
18105061--18105178	13	9.3	14	75	15	71	37	5	5	51	1.48
18105065--18105152	40	2.2	40	91	4	142	36	3	5	54	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182