genome.fa.s21.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  19  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6801078--6801112	18	2.0	17	88	5	52	54	0	0	45	0.99
6801036--6801108	27	2.7	27	76	8	76	52	2	0	45	1.15
6801225--6801259	18	2.0	17	88	5	52	54	0	0	45	0.99
6800997--6801271	147	1.9	149	95	1	500	46	3	2	47	1.35
6801327--6801379	16	3.4	17	73	21	53	56	0	0	43	0.99
6801253--6801439	60	3.1	59	66	13	157	49	6	2	41	1.42
6801205--6801499	119	2.5	120	93	2	495	50	4	2	43	1.35
6804683--6804839	72	2.2	72	82	2	190	32	12	25	29	1.93
6806609--6806646	7	5.6	7	84	6	51	15	0	2	81	0.80
6806611--6806642	13	2.5	13	94	0	55	12	0	3	84	0.74
6809697--6809828	50	2.6	51	78	10	153	36	13	12	37	1.82
6813707--6813984	141	2.0	141	94	0	493	30	27	19	22	1.98
6815262--6815335	35	2.1	35	94	0	130	22	13	24	39	1.90
6815826--6815888	6	10.5	6	100	0	126	17	0	15	66	1.25
6815875--6816052	93	1.9	94	97	1	340	20	6	6	66	1.38
6816042--6816085	18	2.5	17	85	10	54	9	4	2	84	0.85
6820701--6820947	63	3.9	63	81	3	282	35	31	5	27	1.80
6828854--6828892	20	2.0	20	90	10	62	46	20	0	33	1.51
6834431--6834519	44	2.0	44	82	4	108	58	13	8	19	1.61
6839273--6839322	23	2.1	24	82	10	59	18	2	10	70	1.25
6839334--6839381	15	3.3	14	75	18	53	33	6	10	50	1.62
6839335--6839383	14	3.5	13	78	15	53	36	6	10	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6839413--6839475	27	2.3	28	76	13	69	47	6	0	46	1.28
6840604--6840684	3	26.7	3	80	7	92	32	3	2	61	1.26
6845143--6845225	24	3.6	23	75	9	71	73	7	8	10	1.25
6847424--6847667	44	5.7	43	72	7	172	30	20	21	27	1.98
6847643--6847822	98	1.8	98	86	2	263	32	17	21	28	1.96
6848708--6848895	94	2.0	95	98	1	369	25	15	21	37	1.93
6848890--6848972	39	2.1	39	97	0	157	22	15	14	46	1.82
6848987--6849564	289	2.0	289	99	0	1138	33	15	19	32	1.92
6856281--6856346	23	2.9	23	72	4	62	31	7	16	43	1.76
6860200--6860290	24	3.8	24	71	5	76	29	18	30	20	1.97
6860367--6860437	26	2.8	26	82	6	92	35	22	23	18	1.96
6860498--6860557	24	2.5	24	78	13	61	35	18	28	18	1.94
6865452--6865476	7	3.6	7	100	0	50	16	0	0	84	0.63
6866145--6866174	13	2.3	13	94	0	51	83	0	0	16	0.65
6866144--6866182	18	2.1	18	85	9	51	79	2	0	17	0.84
6866647--6866698	24	2.2	24	89	0	77	13	13	13	59	1.61
6873129--6873182	27	2.0	28	85	3	74	44	35	3	16	1.66
6879849--6879899	19	2.7	18	77	16	59	39	11	3	45	1.59
6898159--6898259	44	2.3	43	85	6	132	25	21	22	29	1.99
6919485--6919564	27	3.0	27	88	0	115	26	25	11	37	1.89
6921916--6921967	23	2.3	22	87	6	77	61	25	7	5	1.45
6921927--6921976	11	4.5	11	77	5	55	62	30	4	4	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6929991--6930044	16	3.3	16	75	12	56	40	1	0	57	1.09
6930000--6930066	17	3.6	19	74	20	61	38	1	0	59	1.06
6931184--6931218	7	5.1	7	86	6	54	28	0	0	71	0.86
6931184--6931218	13	2.6	14	86	9	54	28	0	0	71	0.86
6932286--6932332	24	2.0	24	82	0	58	51	0	12	36	1.40
6932551--6932606	27	2.0	28	86	10	80	39	0	1	58	1.08
6933502--6933553	3	17.7	3	96	4	97	34	0	0	65	0.93
6934535--6934583	24	2.1	23	81	11	55	42	6	0	51	1.27
6939600--6939654	23	2.4	23	81	3	67	34	0	0	65	0.93
6953700--6953742	20	2.1	21	86	4	61	60	0	2	37	1.10
6954511--6954543	17	1.9	17	93	0	57	57	3	0	39	1.14
6954503--6954620	29	4.1	29	79	12	104	55	1	1	40	1.20
6956679--6956721	21	2.0	21	90	0	68	44	18	23	13	1.86
6967626--6967728	27	3.8	27	82	7	111	17	24	21	36	1.94
6979938--6980022	27	3.2	26	83	5	89	16	22	23	37	1.93
6979955--6980022	27	2.6	27	88	6	95	16	22	22	39	1.92
6981174--6981251	27	2.9	26	84	7	86	35	21	23	19	1.96
6982848--6982955	26	4.2	26	93	0	189	36	24	7	32	1.83
6989276--6989434	27	5.9	27	82	11	175	33	22	24	18	1.97
6989294--6989437	54	2.7	54	93	2	236	34	24	24	17	1.96
6992847--6992872	11	2.4	11	100	0	52	50	11	0	38	1.39
7005605--7005649	21	2.1	21	83	0	54	28	33	24	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7005614--7005661	21	2.3	21	77	0	51	20	35	22	20	1.96
7005792--7005925	67	2.0	67	97	0	250	29	8	15	46	1.75
7008865--7008967	41	2.5	40	84	1	134	54	4	19	21	1.62
7009884--7010061	31	5.7	31	85	1	223	30	18	25	25	1.98
7010048--7010105	29	2.0	29	89	0	89	32	12	27	27	1.92
7010098--7010252	32	4.8	32	89	3	177	32	9	22	34	1.87
7010098--7010306	97	2.1	97	79	4	215	35	11	22	30	1.90
7014939--7014988	24	2.1	24	92	0	82	14	6	10	70	1.33
7017888--7017933	23	2.0	23	83	8	58	0	26	4	69	1.07
7017979--7018017	16	2.4	16	91	4	60	48	2	0	48	1.15
7019668--7019805	69	2.0	69	98	0	267	26	25	14	34	1.94
7020571--7020668	49	2.0	49	97	0	187	52	12	12	23	1.72
7021213--7021267	27	2.0	27	100	0	110	16	18	7	58	1.60
7022064--7022120	26	2.1	27	93	6	107	47	12	7	33	1.68
7022461--7022512	15	3.2	15	73	19	50	44	0	1	53	1.11
7022600--7022643	22	2.0	22	86	4	63	56	0	0	43	0.99
7022622--7022653	16	1.9	17	93	6	57	43	0	0	56	0.99
7023596--7023621	13	2.0	13	100	0	52	15	0	0	84	0.62
7025194--7025249	28	2.0	28	100	0	112	25	14	28	32	1.94
7026055--7026086	17	1.9	16	93	6	55	37	15	0	46	1.46
7026353--7026534	46	4.0	46	92	1	285	22	23	14	39	1.91
7031601--7031626	13	2.0	13	100	0	52	15	0	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7032180--7032243	34	1.9	32	84	9	83	56	4	4	34	1.41
7032342--7032390	11	4.5	11	78	0	53	65	2	6	26	1.27
7032342--7032390	22	2.2	22	85	0	71	65	2	6	26	1.27
7033107--7033135	2	14.5	2	100	0	58	0	48	0	51	1.00
7043376--7043420	22	2.0	22	100	0	90	20	8	31	40	1.83
7051449--7051522	21	3.5	21	80	10	89	21	33	12	32	1.90
7056411--7056465	15	3.7	15	78	9	58	47	3	0	49	1.19
7056483--7056542	32	2.0	31	81	18	74	48	0	0	51	1.00
7056524--7056554	15	2.0	16	93	6	55	61	0	0	38	0.96
7056529--7056570	22	2.0	20	86	13	59	50	0	0	50	1.00
7056529--7056571	20	2.0	21	86	8	61	48	0	0	51	1.00
7062431--7062471	20	2.0	20	100	0	82	34	9	14	41	1.79
7062935--7063003	24	2.9	24	76	6	70	21	21	21	34	1.97
7063831--7063890	30	2.0	30	96	0	111	41	3	18	36	1.67
7071558--7071590	12	2.7	13	90	9	52	0	30	0	69	0.88
7081683--7081726	19	2.4	18	81	11	54	61	2	0	36	1.09
7083835--7083870	16	2.2	17	90	5	56	75	11	8	5	1.19
7083842--7083894	21	2.5	21	84	9	72	75	9	9	5	1.18
7086760--7086798	18	2.2	18	100	0	78	43	20	15	20	1.88
7096959--7097030	31	2.4	30	75	13	74	41	12	11	34	1.78
7102576--7102678	17	5.7	19	68	13	65	44	2	0	51	1.23
7106448--7106488	22	1.9	22	85	5	57	21	4	14	58	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7108362--7108408	11	4.4	11	78	2	51	59	8	12	19	1.58
7108362--7108408	22	2.2	21	84	3	58	59	8	12	19	1.58
7115494--7115756	40	6.6	40	88	3	325	24	20	27	26	1.99
7115533--7115791	80	3.3	80	85	3	256	25	20	27	25	1.99
7123483--7123706	40	5.6	40	91	1	308	24	20	28	26	1.99
7123444--7123706	80	3.3	80	85	3	318	23	20	28	26	1.99
7123444--7123706	120	2.2	120	82	4	318	23	20	28	26	1.99
7127083--7127126	21	2.1	21	91	4	72	56	0	11	31	1.35
7127929--7127981	26	2.0	26	88	0	79	58	3	5	32	1.39
7128702--7128751	10	5.0	10	81	13	59	68	2	8	22	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182