genome.fa.s21.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  134  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41272425--41272628	40	5.1	40	82	8	238	25	27	22	24	2.00
41275522--41275582	6	10.2	6	96	0	113	68	0	31	0	0.89
41286271--41286298	5	5.6	5	100	0	56	39	0	0	60	0.97
41290792--41290977	50	3.7	50	80	2	187	23	26	22	27	1.99
41294303--41294340	18	2.2	18	85	4	51	44	15	31	7	1.75
41313223--41313250	8	3.5	8	100	0	56	89	0	10	0	0.49
41313858--41313918	25	2.4	25	83	5	79	39	1	0	59	1.08
41315931--41315975	22	2.0	22	83	8	56	40	4	0	55	1.20
41316021--41316047	14	1.9	14	100	0	54	37	22	25	14	1.93
41316767--41316816	24	2.1	24	100	0	100	26	8	14	52	1.68
41318343--41318763	138	3.1	137	89	2	630	43	6	8	40	1.61
41318738--41318962	75	3.0	75	92	1	362	30	14	9	45	1.77
41320019--41320146	41	3.1	41	98	1	247	42	18	2	36	1.64
41320433--41320498	13	5.1	13	83	0	87	30	7	27	34	1.85
41333453--41333552	28	3.5	28	89	4	139	32	29	14	25	1.94
41340073--41340166	48	2.0	48	95	0	170	27	19	28	24	1.98
41340077--41340213	48	2.9	48	86	0	166	27	18	29	24	1.98
41351092--41351353	89	2.9	89	87	2	375	30	17	24	27	1.97
41351172--41351312	44	3.2	44	64	7	106	29	17	26	26	1.97
41362154--41362207	20	2.7	20	85	0	72	25	22	3	48	1.67
41363880--41363925	24	2.0	24	86	4	67	19	13	2	65	1.37
41371568--41371905	51	6.7	50	79	5	329	29	26	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41371574--41371905	103	3.3	102	86	1	416	29	25	14	30	1.95
41372377--41372435	30	1.9	31	86	3	84	28	18	6	45	1.75
41373516--41373620	52	2.0	52	98	0	201	20	17	18	43	1.88
41375671--41376177	49	10.6	49	95	3	860	29	29	8	32	1.86
41375671--41376177	145	3.5	143	95	3	862	29	29	8	32	1.86
41381291--41381373	25	3.3	25	75	6	87	30	22	18	28	1.97
41381368--41381433	25	2.7	24	80	2	78	30	22	19	27	1.98
41381594--41381635	15	2.8	15	78	7	50	42	4	11	40	1.63
41387054--41387182	69	1.9	68	86	1	186	25	24	18	31	1.98
41393088--41393122	18	1.9	18	88	11	54	48	25	2	22	1.64
41400888--41400940	25	2.1	25	96	0	97	32	22	13	32	1.92
41402618--41402686	24	2.9	24	77	0	84	44	20	14	20	1.86
41405284--41405418	51	2.6	51	85	2	182	22	17	27	32	1.96
41405422--41405516	45	2.1	45	92	0	163	26	18	24	30	1.98
41408181--41408216	4	8.8	4	87	6	54	47	2	0	50	1.15
41410427--41410470	23	1.9	23	90	0	70	40	15	15	27	1.88
41410427--41410478	23	2.3	23	86	0	68	38	15	17	28	1.90
41410497--41410643	23	6.3	23	77	6	152	41	14	18	25	1.88
41410484--41410580	47	2.1	48	82	5	126	40	17	16	25	1.90
41410497--41410643	70	2.1	70	94	0	258	41	14	18	25	1.88
41411464--41411587	43	2.9	43	81	11	130	31	29	17	20	1.96
41413429--41413488	27	2.3	27	79	2	68	56	0	6	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41413621--41413697	34	2.3	34	79	2	102	61	15	2	20	1.46
41424597--41424656	30	2.0	30	93	0	102	30	1	11	56	1.45
41426555--41426615	23	2.7	23	74	18	58	65	1	1	31	1.12
41429456--41429489	17	2.0	17	88	0	50	58	11	8	20	1.59
41429943--41430004	21	3.1	19	78	15	63	25	35	6	32	1.82
41438091--41438126	18	2.0	18	89	10	56	55	13	11	19	1.68
41442401--41442561	78	2.1	79	91	1	261	26	20	19	33	1.97
41443728--41443800	37	2.0	37	81	2	85	54	21	5	17	1.63
41444756--41444791	18	2.0	18	89	10	56	55	13	11	19	1.68
41445285--41445336	25	2.2	23	83	10	68	44	13	19	23	1.86
41450729--41450782	27	2.0	27	88	0	81	42	7	16	33	1.76
41456193--41456382	71	2.9	64	80	13	231	40	6	8	44	1.61
41458677--41458929	43	5.9	43	89	0	362	24	31	18	24	1.98
41459251--41459300	21	2.4	21	93	0	82	0	46	18	36	1.49
41459271--41459422	66	2.3	66	83	6	191	13	29	17	40	1.87
41459526--41459920	9	45.4	9	70	19	186	33	1	17	47	1.58
41459554--41459810	25	10.3	25	77	15	196	32	1	17	48	1.55
41459568--41459832	16	15.9	17	71	16	191	32	1	18	47	1.56
41459554--41459776	50	4.6	49	78	14	218	34	0	17	47	1.53
41459557--41459859	75	4.0	74	74	17	239	32	1	17	47	1.58
41459866--41459909	21	2.1	21	87	8	63	34	2	15	47	1.58
41459882--41459906	12	2.1	12	100	0	50	32	0	16	52	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41459882--41459935	28	1.9	28	88	7	83	33	0	16	50	1.46
41459990--41460032	15	2.9	15	78	0	50	58	0	2	39	1.11
41460340--41460379	21	1.9	21	84	0	53	45	0	10	45	1.37
41460208--41460417	69	3.1	69	94	0	359	46	2	6	44	1.44
41461144--41461201	25	2.3	26	90	3	91	43	1	15	39	1.57
41462118--41462171	24	2.2	24	96	0	99	33	0	42	24	1.55
41462128--41462175	14	3.7	14	71	21	50	39	0	39	20	1.53
41464028--41464059	17	1.9	16	93	6	55	31	50	0	18	1.48
41464987--41465220	41	5.7	40	81	5	261	36	30	14	17	1.90
41464987--41465199	82	2.6	82	90	2	311	35	31	15	18	1.91
41464987--41465220	123	1.9	123	83	5	303	36	30	14	17	1.90
41465000--41465260	123	2.1	123	79	5	278	39	29	13	18	1.89
41466187--41466497	76	4.1	76	86	2	419	23	23	22	30	1.99
41466214--41466544	152	2.2	151	81	2	376	25	23	22	29	1.99
41469761--41469806	20	2.3	20	92	0	74	8	23	0	67	1.18
41478899--41479086	41	4.6	41	91	2	306	23	20	24	31	1.98
41479535--41479691	71	2.2	70	81	4	199	31	9	15	43	1.79
41481352--41481492	66	2.1	66	82	0	165	26	23	15	34	1.95
41481477--41481660	67	2.7	67	81	3	217	22	27	18	31	1.97
41483462--41483622	68	2.4	68	81	2	198	24	22	17	34	1.96
41502795--41503193	44	9.2	44	64	12	178	29	22	22	25	1.99
41502821--41503203	43	8.8	43	69	6	243	29	23	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41502864--41503196	44	7.6	44	70	6	255	29	22	22	25	1.99
41502817--41503203	87	4.4	87	94	0	675	29	22	22	25	1.99
41503322--41503445	44	2.8	44	79	3	124	33	20	19	25	1.96
41503432--41503591	89	1.9	88	81	9	204	28	18	23	29	1.98
41503471--41503765	44	6.8	43	69	12	140	29	19	23	28	1.98
41503317--41503768	217	2.1	216	84	4	579	30	19	22	27	1.98
41505540--41505612	25	2.8	25	82	12	85	34	2	2	60	1.25
41509475--41509558	41	2.0	41	100	0	168	29	17	14	38	1.90
41513734--41513887	68	2.3	68	88	2	229	21	23	18	37	1.94
41516130--41516233	43	2.4	43	85	1	129	25	26	21	26	1.99
41516130--41516248	43	2.8	42	79	3	121	27	26	21	25	1.99
41521533--41521750	33	6.4	33	75	18	182	20	20	28	30	1.97
41521556--41521750	75	2.7	69	92	4	309	21	19	28	30	1.97
41521556--41521764	69	2.9	70	91	5	321	22	20	27	29	1.98
41529063--41529197	33	3.8	33	72	18	117	21	19	28	31	1.97
41528984--41529187	76	2.7	76	89	0	293	22	18	27	30	1.97
41529201--41529246	24	1.9	24	100	0	92	30	19	23	26	1.98
41541521--41541642	39	3.0	39	90	7	172	62	0	2	34	1.14
41541539--41541642	39	2.6	40	93	3	174	63	0	2	33	1.09
41543236--41543274	20	1.9	21	89	5	62	51	0	2	46	1.14
41545185--41545255	30	2.2	32	85	12	110	46	5	4	43	1.46
41545187--41545248	30	2.1	30	96	0	115	46	6	4	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41545530--41545582	12	4.2	12	76	9	52	35	20	7	35	1.81
41545537--41545586	13	3.9	13	77	12	50	34	22	8	36	1.83
41545529--41545586	26	2.3	25	75	3	62	37	20	8	32	1.83
41551017--41551130	57	2.0	57	100	0	228	47	14	14	24	1.80
41552886--41552911	9	2.9	9	100	0	52	42	23	0	34	1.54
41555272--41555330	24	2.5	24	88	0	91	44	0	25	30	1.55
41555396--41555460	20	3.4	19	69	14	62	35	4	15	44	1.67
41555371--41555483	37	3.1	37	94	1	192	32	4	15	47	1.65
41555383--41555477	17	5.2	17	65	14	55	33	3	13	49	1.58
41555484--41555620	9	14.6	9	89	6	193	21	9	32	36	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182