genome.fa.s21.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  113  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34326583--34326627	12	3.7	12	85	5	63	57	2	22	17	1.50
34337533--34337720	40	4.7	40	95	0	313	30	20	26	22	1.98
34340041--34340612	68	8.4	68	83	0	658	25	23	18	32	1.97
34343526--34343579	23	2.4	21	77	14	54	27	1	20	50	1.59
34350228--34350272	19	2.2	20	84	7	56	46	0	2	51	1.13
34351288--34351460	89	2.0	88	82	3	213	39	17	9	32	1.83
34351592--34351710	56	2.1	55	83	7	150	61	4	5	28	1.38
34352040--34352215	89	2.0	87	86	4	246	34	9	21	34	1.85
34360024--34360067	23	1.9	22	82	17	54	36	25	0	38	1.56
34360120--34360205	45	1.9	45	90	0	136	33	24	15	26	1.95
34366611--34366722	9	12.4	9	87	3	136	39	26	8	25	1.85
34366611--34366722	18	6.2	18	86	4	154	39	26	8	25	1.85
34366611--34366714	27	3.9	27	90	0	172	39	26	9	24	1.86
34370808--34370856	24	2.0	25	84	4	64	28	22	8	40	1.82
34373698--34373753	19	2.9	18	78	21	60	76	3	19	0	0.93
34374634--34374689	24	2.3	24	90	0	94	33	8	23	33	1.86
34374964--34375370	89	4.6	89	85	1	564	29	24	21	23	1.99
34375358--34375709	44	8.1	43	69	11	202	33	20	20	26	1.97
34375380--34375492	41	2.6	44	83	4	133	30	22	19	28	1.98
34375358--34375714	130	2.8	128	85	4	441	33	21	20	25	1.97
34376348--34376995	324	2.0	324	96	0	1188	32	16	13	36	1.89
34389611--34389694	37	2.3	37	87	4	116	36	27	10	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34392763--34392804	10	4.3	10	77	17	52	30	0	0	69	0.89
34407300--34407347	17	3.1	17	72	27	61	25	27	18	29	1.98
34407317--34407341	12	2.1	12	100	0	50	24	20	24	32	1.98
34407376--34407400	7	3.6	7	100	0	50	48	16	0	36	1.46
34407433--34407463	16	2.0	15	93	6	53	45	12	6	35	1.68
34419528--34419598	37	1.9	37	85	2	99	30	9	19	39	1.84
34426927--34426992	34	1.9	35	87	3	98	45	12	9	33	1.73
34426966--34427004	14	2.7	15	80	11	55	33	15	10	41	1.81
34427443--34427677	129	1.8	129	87	0	353	31	20	17	31	1.96
34427443--34427711	129	2.1	129	85	1	351	30	21	16	31	1.95
34427645--34427769	44	2.9	43	79	3	126	31	19	16	33	1.93
34427941--34428265	44	7.3	43	71	11	181	29	19	18	32	1.96
34427967--34428298	181	1.8	180	80	5	400	28	21	16	33	1.95
34428582--34428615	17	2.0	17	88	0	50	29	32	11	26	1.92
34436005--34436075	18	3.9	18	68	5	54	59	9	11	19	1.59
34439561--34439660	50	2.0	50	98	0	191	20	17	27	36	1.94
34442237--34442310	35	2.1	35	85	2	105	28	20	13	37	1.90
34444277--34444316	18	2.2	18	86	4	53	42	5	7	45	1.54
34444797--34444853	20	2.8	20	92	5	89	28	28	19	24	1.98
34444806--34444864	20	3.0	20	87	5	84	28	27	16	27	1.97
34453477--34453524	21	2.3	20	79	10	53	64	4	6	25	1.35
34467074--34467124	15	3.5	15	81	5	59	5	19	1	72	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34475302--34475368	31	2.1	31	81	13	75	26	14	25	32	1.95
34476157--34476221	22	2.9	22	90	2	94	33	33	4	27	1.78
34483699--34483741	18	2.4	18	77	14	52	46	6	9	37	1.63
34484185--34484362	28	6.4	28	88	2	225	25	13	29	32	1.94
34484641--34484692	27	1.9	27	96	0	95	25	11	26	36	1.90
34484311--34485297	329	3.0	329	97	0	1841	31	12	23	32	1.92
34484970--34485021	27	1.9	27	96	0	95	25	11	26	36	1.90
34485337--34485402	27	2.4	27	85	5	89	28	12	21	37	1.89
34485419--34485476	28	2.1	28	90	0	89	27	17	27	27	1.97
34493271--34493367	27	3.6	27	90	2	140	27	13	28	29	1.94
34500186--34500355	39	4.3	39	87	0	223	34	19	24	21	1.97
34504538--34504584	23	2.0	23	100	0	94	25	8	14	51	1.71
34506409--34506658	110	2.3	110	100	0	500	29	19	13	38	1.90
34513697--34513750	28	2.0	26	82	10	63	22	25	9	42	1.83
34514352--34514410	28	2.1	28	100	0	118	32	13	0	54	1.40
34519650--34519699	25	2.0	25	92	0	82	50	18	6	26	1.69
34529508--34529618	27	4.2	26	76	16	93	36	20	25	18	1.95
34531007--34531845	24	35.0	24	99	0	1642	28	37	0	33	1.60
34538044--34538130	27	3.2	27	87	6	122	37	24	22	14	1.92
34539510--34539586	24	3.2	24	88	3	111	24	40	2	32	1.69
34543264--34543478	43	5.0	43	86	4	308	24	14	29	30	1.95
34546245--34546307	30	2.1	30	85	5	83	50	12	17	19	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34546245--34546307	15	4.2	15	77	0	72	50	12	17	19	1.77
34547843--34547886	20	2.2	20	95	0	79	15	31	34	18	1.92
34558024--34558152	43	3.0	43	76	15	131	23	17	26	32	1.97
34561649--34561852	40	5.1	40	80	7	211	25	27	21	25	1.99
34565708--34565837	27	4.8	27	73	3	100	21	24	10	43	1.84
34566036--34566125	27	3.3	27	73	3	90	28	22	14	34	1.93
34574047--34574931	40	22.1	40	92	0	1441	22	23	26	27	2.00
34574046--34574917	80	10.9	80	98	0	1674	22	23	26	27	2.00
34577993--34578221	40	5.7	40	96	0	404	21	27	20	30	1.98
34592770--34592815	17	2.6	17	82	3	56	43	4	4	47	1.42
34592993--34593087	47	2.0	47	91	4	156	26	24	7	42	1.80
34605735--34605916	44	4.1	44	85	4	215	26	18	23	30	1.98
34605755--34605916	44	3.7	44	87	2	218	25	18	24	30	1.98
34605737--34605913	89	2.0	89	82	6	216	27	17	23	31	1.97
34608481--34608664	42	4.4	42	80	4	192	22	17	24	35	1.95
34625875--34625918	18	2.4	18	82	10	54	27	13	22	36	1.92
34638082--34638106	12	2.1	12	100	0	50	24	24	32	20	1.98
34642402--34642651	50	4.9	50	80	6	220	27	20	28	23	1.99
34642858--34642896	20	2.0	20	89	0	60	53	2	25	17	1.56
34644107--34644270	55	3.0	55	85	7	235	25	21	10	42	1.85
34644120--34644306	27	6.8	27	82	3	196	25	21	11	42	1.86
34644120--34644306	55	3.4	54	80	7	209	25	21	11	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34645820--34645873	26	2.1	26	100	0	108	42	7	12	37	1.72
34645824--34645882	26	2.3	26	91	2	93	40	5	13	40	1.67
34650471--34650521	22	2.3	22	82	3	57	33	5	1	58	1.33
34651636--34651669	16	2.1	16	94	0	59	35	8	17	38	1.81
34654951--34654997	6	7.8	6	90	0	58	6	17	59	17	1.57
34659815--34659891	24	3.2	24	71	15	77	22	20	22	35	1.96
34659814--34659923	48	2.2	51	85	6	147	24	22	21	30	1.99
34659815--34659923	25	4.5	24	72	16	80	24	22	22	31	1.98
34663123--34663168	23	2.0	23	100	0	92	30	13	17	39	1.87
34669181--34669290	50	2.2	50	76	0	112	29	24	27	19	1.98
34672627--34672899	136	2.0	138	82	2	336	31	27	20	20	1.97
34681500--34681634	51	2.7	50	80	6	157	23	18	25	32	1.97
34681642--34682021	84	4.5	84	96	0	629	20	15	25	38	1.92
34684277--34684328	25	2.1	25	100	0	104	53	7	11	26	1.63
34699553--34699582	13	2.3	13	94	0	51	60	3	6	30	1.39
34701209--34701436	114	2.0	114	99	0	447	27	7	25	39	1.81
34701985--34702053	26	2.7	26	88	0	102	21	21	27	28	1.99
34704405--34704463	23	2.7	22	82	12	61	64	3	3	28	1.26
34707041--34707101	25	2.3	27	75	18	65	34	4	4	55	1.43
34707060--34707106	25	1.9	24	83	12	60	36	2	6	55	1.37
34708462--34708494	14	2.4	14	90	5	50	0	3	9	87	0.63
34714563--34714713	26	5.7	26	86	1	176	24	12	29	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34715137--34715231	49	1.9	49	87	4	138	23	18	17	40	1.92
34725616--34726022	201	2.0	201	100	0	814	27	30	9	31	1.89
34738776--34738819	22	2.0	22	81	0	52	40	0	2	56	1.11
34744507--34744544	19	2.0	19	85	10	51	21	42	0	36	1.53
34745314--34745357	21	2.0	22	83	12	56	36	2	9	52	1.46
34757060--34757120	25	2.4	25	89	5	88	31	14	24	29	1.95
34758175--34758224	15	3.3	15	71	20	50	30	24	28	18	1.97
34758165--34758224	30	2.0	30	90	0	93	26	23	28	21	1.99
34765989--34766409	138	3.0	138	89	1	637	40	6	4	47	1.51
34769862--34770044	79	2.3	81	84	7	232	24	22	27	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182