genome.fa.s21.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  67  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20427442--20427485	3	14.7	3	90	9	72	29	0	2	68	1.02
20441195--20441246	18	2.9	17	73	18	52	34	5	19	40	1.75
20442391--20442795	202	2.0	202	94	0	711	31	20	20	28	1.97
20450160--20450211	26	2.0	26	100	0	104	53	11	19	15	1.71
20455583--20455608	3	8.7	3	100	0	52	30	0	0	69	0.89
20462620--20462745	43	2.9	43	81	9	141	31	30	17	19	1.95
20463349--20463405	28	2.0	28	100	0	114	61	10	3	24	1.44
20463862--20463890	11	2.6	11	100	0	58	65	0	0	34	0.93
20464796--20466716	143	13.4	143	85	1	2418	30	19	21	28	1.98
20465522--20465744	44	4.8	44	68	11	149	29	21	22	26	1.99
20466610--20466819	103	2.0	103	94	0	366	29	20	19	31	1.97
20466467--20466931	246	1.9	246	90	1	736	29	19	20	29	1.97
20466609--20466793	54	3.5	53	66	11	139	29	18	19	32	1.96
20467458--20467506	20	2.5	19	84	12	64	63	20	2	14	1.40
20468674--20468699	3	8.7	3	100	0	52	30	0	0	69	0.89
20470615--20471254	319	2.0	319	93	1	1088	38	13	17	30	1.88
20472572--20472692	30	4.0	30	79	0	134	34	20	14	29	1.93
20479508--20479562	19	2.8	19	78	15	60	65	1	1	30	1.13
20480628--20480691	29	2.1	31	91	5	105	17	1	10	70	1.24
20483850--20483879	14	2.1	14	93	0	51	30	26	3	40	1.72
20491386--20491430	25	1.9	22	90	4	54	60	6	6	26	1.47
20496816--20496846	14	2.1	15	94	5	55	83	6	3	6	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20498463--20498496	17	2.1	17	88	5	52	26	2	5	64	1.30
20499024--20499065	17	2.4	18	92	4	68	28	2	0	69	1.01
20499260--20499303	13	3.4	13	78	12	54	68	0	0	31	0.90
20502065--20502103	19	2.1	19	90	0	60	48	0	0	51	1.00
20504372--20504409	15	2.4	17	91	8	62	52	0	2	44	1.14
20506626--20506671	3	15.3	3	100	0	92	32	0	0	67	0.91
20507650--20507729	29	2.8	29	76	3	81	43	11	22	22	1.84
20511400--20511462	31	2.0	31	90	0	99	26	15	19	38	1.92
20511485--20511582	51	1.9	51	97	0	187	30	24	15	29	1.95
20511431--20511589	51	3.5	44	81	12	185	29	22	15	32	1.95
20512635--20512810	88	2.0	88	97	0	334	32	16	11	39	1.85
20519113--20519376	40	6.6	39	84	5	325	23	21	28	25	1.99
20519113--20519374	79	3.3	80	90	4	372	24	22	28	25	1.99
20519113--20519376	119	2.2	121	85	5	360	23	21	28	25	1.99
20519113--20519409	79	3.7	79	84	6	345	24	21	27	25	1.99
20521801--20521900	42	2.4	42	91	0	155	25	27	12	36	1.91
20530368--20530397	2	15.0	2	100	0	60	50	0	50	0	1.00
20532759--20532789	2	15.5	2	100	0	62	51	0	48	0	1.00
20534838--20534879	17	2.5	18	85	11	54	61	11	2	23	1.42
20539195--20539240	23	2.0	23	87	4	67	34	0	2	63	1.07
20540869--20540910	12	3.5	12	75	12	50	23	9	2	64	1.35
20540865--20540916	24	2.2	24	100	0	104	25	7	5	61	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20544755--20544784	10	3.0	10	95	0	51	3	10	0	86	0.67
20547992--20548048	25	2.3	25	90	0	87	17	24	21	36	1.94
20548003--20548070	25	2.7	25	76	15	59	19	22	25	33	1.97
20554955--20555130	42	4.2	42	78	5	185	19	18	14	47	1.82
20554955--20555130	84	2.1	84	84	4	230	19	18	14	47	1.82
20554966--20555130	21	7.9	21	79	6	156	19	19	13	47	1.83
20557865--20557903	12	3.1	12	79	13	51	51	0	2	46	1.14
20559503--20559544	20	2.1	20	86	0	57	47	0	7	45	1.30
20567550--20567699	59	2.6	58	85	3	212	21	18	22	37	1.94
20567741--20567796	26	2.2	26	83	6	69	23	12	8	55	1.65
20568234--20568268	18	2.0	17	88	5	52	45	0	0	54	0.99
20568504--20568539	16	2.2	16	95	0	63	38	33	0	27	1.57
20584144--20584201	30	1.9	30	100	0	116	34	13	22	29	1.93
20586380--20586435	25	2.2	26	81	9	62	32	3	0	64	1.11
20594053--20594431	189	2.0	186	95	1	686	37	21	11	30	1.88
20596214--20596266	23	2.3	23	83	3	61	28	7	5	58	1.48
20598732--20598773	22	1.9	22	90	0	66	19	28	16	35	1.93
20604834--20604891	22	2.7	21	84	7	80	32	3	18	44	1.67
20604844--20604888	23	2.0	22	91	4	72	31	4	17	46	1.68
20615100--20615157	30	1.9	30	89	0	89	10	27	41	20	1.85
20615424--20615464	13	3.3	13	78	21	52	51	14	0	34	1.43
20616950--20616988	6	6.5	6	87	0	60	79	5	0	15	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20618642--20618695	28	1.9	28	81	7	65	64	1	9	24	1.32
20633558--20633647	37	2.4	37	87	3	128	31	14	14	40	1.86
20635356--20635388	13	2.5	13	100	0	66	48	18	9	24	1.76
20635450--20635489	3	13.3	3	94	0	71	70	0	30	0	0.88
20635552--20635583	12	2.5	13	90	10	57	50	0	0	50	1.00
20637882--20637907	12	2.2	12	100	0	52	46	7	23	23	1.78
20644980--20645034	24	2.3	24	83	0	65	14	27	25	32	1.95
20645111--20645162	27	1.9	27	84	7	70	19	15	25	40	1.90
20645328--20645353	12	2.2	12	100	0	52	46	7	23	23	1.78
20655770--20655814	18	2.5	18	81	0	54	48	2	0	48	1.13
20656360--20656397	20	1.9	20	89	10	60	28	0	7	63	1.23
20656388--20656435	13	3.8	13	77	2	53	37	2	0	60	1.09
20660812--20660866	22	2.5	22	93	0	92	10	12	32	43	1.78
20660789--20660905	60	2.0	60	89	3	182	13	12	30	42	1.82
20660834--20660930	38	2.6	38	80	3	115	13	13	30	42	1.83
20667074--20667123	17	2.7	20	78	18	70	10	0	44	46	1.37
20671713--20671762	17	2.7	20	78	18	70	10	0	44	46	1.37
20672540--20672581	20	2.0	21	95	4	77	42	0	0	57	0.99
20672540--20672622	20	4.3	19	73	16	64	40	0	0	59	0.98
20672548--20672593	21	2.2	20	84	3	56	43	0	0	56	0.99
20673788--20673875	46	1.9	46	100	0	176	39	12	18	29	1.87
20684408--20684451	19	2.3	19	84	7	54	25	22	11	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20692558--20693124	44	12.9	43	70	13	216	31	17	20	29	1.96
20692691--20692935	47	5.4	47	75	14	237	31	17	20	30	1.96
20692562--20692893	132	2.5	132	91	3	521	31	17	21	30	1.96
20706740--20706783	22	1.9	23	90	9	72	45	0	13	40	1.44
20706887--20706940	25	2.1	26	86	6	74	31	11	5	51	1.60
20710095--20710171	38	2.0	38	82	5	93	9	32	5	53	1.55
20717058--20717207	48	3.1	48	77	6	160	43	16	16	24	1.87
20717077--20717211	48	2.8	48	85	1	189	45	16	14	23	1.83
20717753--20717872	42	2.8	43	79	2	136	32	23	15	28	1.95
20722275--20722393	42	2.8	42	97	0	220	32	21	21	23	1.98
20722277--20722489	42	5.1	42	87	2	194	30	20	19	30	1.97
20722548--20722581	14	2.4	14	95	0	59	52	20	8	17	1.71
20722805--20722875	21	3.4	21	80	0	79	2	45	18	33	1.64
20728326--20728490	18	9.5	18	66	30	69	33	0	20	45	1.52
20728326--20728490	7	19.0	9	65	32	69	33	0	20	45	1.52
20728340--20728636	19	15.6	19	67	22	78	31	0	20	47	1.53
20728371--20728752	26	15.2	26	88	6	531	32	0	20	46	1.56
20728371--20728753	51	7.7	46	87	6	277	32	1	20	46	1.58
20728636--20728679	18	2.4	18	84	0	70	34	4	18	43	1.70
20731321--20731396	7	10.9	7	74	5	64	46	35	1	17	1.56
20731437--20731486	17	3.0	17	94	2	84	50	16	0	34	1.45
20731508--20731858	113	3.1	111	80	7	411	26	23	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20731643--20732040	188	2.1	188	94	0	688	26	23	18	31	1.97
20731831--20732256	114	3.7	114	79	4	464	26	23	19	30	1.98
20737990--20738082	47	2.0	47	89	0	141	18	20	21	39	1.92
20740632--20740678	24	2.0	24	86	0	67	34	6	10	48	1.63
20750020--20750375	43	8.3	43	88	2	477	28	18	27	25	1.98
20750020--20750375	85	4.2	85	88	2	491	28	18	27	25	1.98
20752901--20753010	54	2.0	54	96	0	202	19	8	26	46	1.77
20767300--20767484	50	3.8	49	80	6	216	27	20	20	32	1.97
20767568--20767838	44	6.2	44	71	11	153	27	26	22	23	2.00
20767612--20768160	88	6.2	88	90	1	868	24	24	24	26	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182