genome.fa.s21.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  104  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31302665--31302945	54	5.2	55	82	5	267	22	19	18	40	1.92
31302692--31302947	81	3.2	79	85	6	311	23	19	17	39	1.92
31308922--31308958	18	2.1	18	90	10	58	54	0	5	40	1.24
31316049--31316115	20	3.4	19	76	13	64	74	7	4	13	1.18
31323600--31323634	16	2.2	16	89	0	52	37	25	20	17	1.94
31324425--31324501	25	2.9	26	84	5	93	29	20	19	29	1.97
31329646--31329674	14	2.0	15	93	6	51	37	6	0	55	1.27
31343025--31343157	39	3.4	39	88	0	194	12	30	20	36	1.90
31343045--31343146	20	5.2	20	64	13	59	13	32	17	36	1.89
31343061--31343123	19	3.3	19	70	12	56	11	34	15	38	1.83
31348842--31348936	50	1.9	50	97	0	181	36	4	27	31	1.76
31354249--31354294	21	2.2	21	84	7	58	26	28	15	30	1.96
31354789--31354874	37	2.3	37	78	13	95	16	12	36	34	1.87
31361044--31361077	16	2.1	16	89	10	52	64	0	20	14	1.28
31362059--31362092	15	2.2	16	94	5	61	73	0	0	26	0.83
31363022--31363138	35	3.3	35	78	3	119	18	12	27	41	1.87
31377632--31377663	11	2.9	11	95	0	55	28	0	15	56	1.40
31377815--31377845	16	1.9	16	93	0	53	51	3	29	16	1.59
31384309--31384573	40	6.7	40	85	5	286	26	27	21	24	1.99
31384276--31384573	80	3.7	80	79	9	263	25	27	21	25	1.99
31384505--31384582	40	1.9	41	82	10	97	26	28	20	24	1.99
31386225--31386285	30	2.0	30	100	0	122	45	13	21	19	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31388306--31388399	41	2.3	41	86	0	125	39	24	15	20	1.92
31391157--31391203	20	2.3	20	85	0	67	29	36	12	21	1.91
31392867--31392904	19	2.0	19	89	0	58	34	23	26	15	1.95
31393335--31393369	17	2.0	18	88	5	54	17	31	31	20	1.95
31395137--31395169	14	2.3	15	89	5	50	18	0	0	81	0.68
31395683--31395723	13	3.2	13	86	10	57	36	7	7	48	1.59
31398524--31399179	220	3.0	220	94	0	1149	29	16	18	35	1.93
31402532--31402674	43	3.3	43	80	5	139	34	21	13	30	1.93
31417734--31417813	30	2.7	30	84	3	101	28	22	25	23	1.99
31417870--31417946	26	3.0	26	86	0	100	40	24	19	15	1.90
31418122--31418563	27	16.4	26	82	7	360	20	19	16	43	1.88
31418121--31418563	54	8.2	53	80	7	423	20	18	16	43	1.88
31418121--31418563	81	5.5	81	82	5	488	20	18	16	43	1.88
31421864--31421906	13	3.2	14	83	6	54	53	16	16	13	1.73
31422343--31422392	13	3.8	13	81	0	55	4	28	34	34	1.76
31424872--31424919	18	2.7	18	87	3	62	10	12	6	70	1.32
31426140--31426186	15	3.3	15	72	22	55	36	10	2	51	1.49
31426132--31426186	28	2.1	27	90	10	87	36	9	3	50	1.51
31426139--31426203	28	2.4	27	87	5	94	33	9	4	52	1.54
31427142--31427196	27	2.0	27	100	0	110	21	27	18	32	1.96
31440287--31440459	72	2.4	74	79	10	196	54	12	6	26	1.63
31440876--31440923	18	2.7	18	93	0	78	37	12	14	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31447624--31447902	55	5.1	55	98	0	531	42	20	11	25	1.86
31449876--31450100	40	5.7	40	87	5	287	25	27	22	24	2.00
31449876--31450100	119	1.9	120	84	6	305	25	27	22	24	2.00
31464092--31464171	28	2.9	28	88	1	108	30	25	26	18	1.98
31464524--31464803	27	10.4	25	78	13	222	18	20	18	42	1.89
31464529--31464807	54	5.2	54	80	6	307	18	20	17	43	1.89
31464529--31464807	107	2.6	108	84	4	325	18	20	17	43	1.89
31464524--31464803	80	3.5	80	81	4	314	18	20	18	42	1.89
31468634--31468872	40	5.9	40	86	0	316	35	17	29	17	1.93
31472911--31472947	15	2.5	15	91	8	58	72	0	10	16	1.10
31478521--31478578	28	2.1	28	100	0	116	20	24	25	29	1.99
31478653--31480583	965	2.0	965	100	0	3862	30	17	19	33	1.95
31483685--31483811	64	2.0	64	96	0	236	35	16	17	30	1.92
31484507--31484630	48	2.6	47	82	6	131	30	33	12	23	1.91
31508331--31508408	29	2.7	29	80	4	86	34	20	17	26	1.95
31512552--31512577	12	2.2	12	100	0	52	7	23	0	69	1.14
31515684--31515890	105	2.0	105	98	0	396	34	21	24	19	1.96
31524711--31525081	183	2.0	183	98	0	715	36	22	8	32	1.83
31526491--31526670	57	3.1	57	79	7	202	29	18	6	45	1.75
31526501--31526671	59	2.9	58	82	5	195	28	18	7	45	1.76
31526600--31526718	51	2.3	52	87	7	165	30	17	6	45	1.74
31531359--31531415	19	2.8	20	76	20	55	42	14	1	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31535203--31535296	45	2.1	45	93	0	161	30	24	19	25	1.98
31535293--31535488	51	3.9	50	82	4	250	30	29	17	22	1.97
31535300--31535484	101	1.8	101	92	3	318	30	28	17	22	1.97
31537693--31537797	53	2.0	53	96	0	192	37	5	15	41	1.71
31543362--31543608	50	4.8	50	79	8	232	28	20	27	23	1.99
31549181--31549205	7	3.6	7	100	0	50	88	0	12	0	0.53
31550898--31550923	5	5.2	5	100	0	52	42	19	19	19	1.90
31551674--31551733	30	2.0	31	86	3	86	40	0	40	20	1.52
31551947--31551971	9	2.8	9	100	0	50	32	12	12	44	1.78
31552128--31552164	9	4.1	9	92	0	65	29	10	13	45	1.77
31551902--31552263	181	2.0	181	97	1	690	33	10	17	38	1.84
31554526--31554575	19	2.5	21	87	9	70	56	0	4	40	1.18
31554954--31554978	9	2.8	9	100	0	50	0	8	0	92	0.40
31554950--31554988	20	1.9	21	89	5	62	5	7	0	87	0.68
31555416--31555489	38	1.9	38	88	0	112	33	9	20	36	1.85
31557478--31557536	31	1.9	31	82	6	75	40	1	1	55	1.20
31560371--31560411	21	2.0	21	90	0	64	12	14	7	65	1.45
31560689--31560747	31	1.9	31	86	6	84	40	10	11	37	1.76
31562693--31562744	26	2.0	26	96	0	95	17	26	9	46	1.79
31572247--31572276	3	10.0	3	100	0	60	66	0	33	0	0.92
31574068--31574094	13	2.1	13	100	0	54	29	7	22	40	1.81
31574681--31574724	22	2.0	21	91	4	70	40	4	13	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31581042--31581072	15	2.1	15	93	0	53	29	6	16	48	1.70
31582575--31582634	30	2.0	30	100	0	120	26	30	20	23	1.98
31583126--31583311	93	2.0	94	96	1	347	38	17	2	41	1.61
31587921--31588060	69	2.0	69	88	2	210	37	22	15	23	1.93
31592446--31592493	22	2.1	22	84	3	60	35	8	2	54	1.42
31609294--31609415	23	5.3	23	73	7	113	32	22	18	26	1.97
31609294--31609415	46	2.7	46	88	0	181	32	22	18	26	1.97
31614813--31614841	3	9.7	3	100	0	58	68	0	31	0	0.89
31620310--31620431	23	5.3	23	85	3	174	29	26	22	22	1.99
31620310--31620431	46	2.7	46	93	0	199	29	26	22	22	1.99
31620657--31620695	18	2.2	17	86	13	53	46	20	0	33	1.51
31626668--31626706	18	2.2	18	100	0	78	56	10	5	28	1.54
31626740--31626803	29	2.2	29	85	0	83	31	26	1	40	1.65
31627321--31627365	19	2.3	20	81	11	58	13	2	4	80	0.97
31632047--31632081	18	1.9	18	88	0	52	57	11	2	28	1.48
31632119--31632182	29	2.2	29	88	0	92	31	28	1	39	1.66
31632431--31632479	19	2.6	20	84	12	68	57	2	6	34	1.35
31632432--31632474	18	2.4	17	85	14	52	58	2	6	32	1.38
31633449--31633518	31	2.3	31	87	2	97	71	11	8	8	1.31
31637855--31638104	132	1.9	132	88	3	378	26	26	10	37	1.88
31639198--31639246	7	6.7	7	82	17	64	81	0	0	18	0.69
31639185--31639255	30	2.4	29	88	6	108	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31640253--31640307	15	3.8	15	73	21	55	63	0	0	36	0.95
31641023--31641150	57	2.2	57	80	6	134	51	3	1	43	1.26
31650330--31650374	7	6.4	7	100	0	90	28	0	15	55	1.41
31654894--31654997	41	2.5	41	84	0	145	31	16	29	22	1.95
31661967--31662036	35	2.0	35	100	0	140	40	11	11	37	1.77
31662224--31662267	21	2.1	21	100	0	88	36	4	27	31	1.77
31667870--31667914	18	2.6	18	86	10	58	42	6	15	35	1.73
31668615--31668650	18	2.0	18	89	10	56	25	5	5	63	1.38
31671079--31671123	20	2.2	20	88	0	63	51	6	6	35	1.55
31678623--31678662	20	2.1	19	95	4	71	57	7	0	35	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182