genome.fa.s21.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  118  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36165758--36166146	142	2.8	135	81	6	417	41	35	1	22	1.62
36165989--36166025	7	5.3	7	90	0	56	35	48	0	16	1.46
36166010--36166100	22	4.2	22	71	13	55	40	36	0	23	1.55
36166094--36166132	14	2.8	14	80	0	51	56	20	0	23	1.42
36166124--36166162	14	2.8	14	92	7	62	38	46	0	15	1.46
36166172--36166205	15	2.3	15	90	5	52	44	32	0	23	1.54
36166786--36166866	39	2.1	38	81	4	90	22	22	22	33	1.97
36175351--36175394	19	2.2	20	88	4	63	22	25	0	52	1.48
36195505--36195551	26	1.9	23	87	12	67	42	6	17	34	1.74
36195732--36195780	25	2.1	24	81	11	57	32	4	2	61	1.26
36195770--36195807	11	3.5	11	85	7	51	31	0	0	68	0.90
36195768--36195834	19	3.6	19	75	16	68	32	0	1	65	1.02
36204427--36204457	3	10.7	3	93	6	55	35	29	0	35	1.58
36235376--36235439	30	2.2	29	91	2	101	59	15	1	23	1.45
36246464--36246497	18	1.9	17	88	5	50	5	26	0	67	1.13
36246622--36246670	18	2.7	18	84	9	64	6	20	0	73	1.04
36246629--36246667	6	6.3	6	88	5	51	5	17	0	76	0.96
36247382--36247456	39	1.9	39	83	0	96	28	17	17	37	1.92
36247692--36247763	24	3.1	24	63	25	64	19	19	20	40	1.92
36247699--36247771	24	3.2	23	64	25	55	21	20	19	38	1.94
36247693--36247804	45	2.5	45	85	4	145	24	20	18	36	1.95
36250960--36251017	21	2.8	21	91	0	98	27	27	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36252424--36252451	12	2.3	12	100	0	56	28	10	0	60	1.30
36267996--36268381	141	2.8	141	86	2	541	17	16	23	42	1.88
36270886--36270932	9	5.3	9	82	9	53	21	0	2	76	0.89
36272066--36272104	7	5.3	7	90	9	60	46	12	0	41	1.42
36275271--36275319	19	2.8	17	80	14	55	28	6	0	65	1.16
36275271--36275313	19	2.2	20	84	12	63	30	4	0	65	1.13
36282177--36283223	94	11.2	94	81	5	1014	35	19	20	25	1.95
36282406--36283191	44	16.8	46	63	21	183	35	19	19	25	1.96
36285109--36285149	8	5.1	8	84	0	55	26	4	0	68	1.10
36285901--36285963	18	3.5	17	75	23	58	58	1	4	34	1.29
36286159--36286241	19	4.2	18	73	20	60	21	4	4	68	1.27
36286566--36286630	34	1.9	34	96	0	121	41	9	1	47	1.45
36286792--36286824	17	2.0	17	88	5	50	39	0	0	60	0.97
36287008--36287040	16	2.1	16	100	0	66	42	6	6	45	1.53
36293742--36293827	39	2.2	39	95	2	154	39	9	5	45	1.60
36294877--36294946	27	2.6	27	74	0	77	27	31	30	11	1.91
36295447--36295533	40	2.3	38	81	11	108	34	6	8	50	1.59
36295326--36295533	76	2.6	78	77	11	219	34	5	10	49	1.60
36297975--36298204	114	2.0	114	96	0	424	27	23	19	29	1.98
36298813--36298851	17	2.3	17	90	0	60	17	10	7	64	1.48
36298869--36298898	16	1.9	15	93	6	51	26	3	0	70	1.03
36298830--36299685	159	5.4	159	95	1	1454	28	8	8	53	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36299667--36299706	20	2.0	20	85	9	55	7	10	5	77	1.11
36299861--36299893	12	2.8	12	95	0	57	69	6	0	24	1.10
36300111--36300230	3	42.7	3	69	15	53	0	37	0	60	1.08
36300192--36300230	13	2.9	13	92	3	60	0	35	0	64	0.94
36301094--36301130	11	3.5	11	96	3	67	48	0	0	51	1.00
36301125--36301156	6	5.3	6	100	0	64	18	0	0	81	0.70
36305686--36305746	28	2.2	28	85	11	81	44	19	21	14	1.86
36306943--36307028	25	3.3	27	64	9	79	53	11	17	17	1.72
36308906--36308950	21	2.1	21	84	8	56	26	4	22	46	1.70
36318694--36318723	2	15.0	2	92	0	51	53	0	46	0	1.00
36325570--36325610	20	2.0	21	85	4	57	63	0	4	31	1.15
36325669--36325756	11	7.8	11	67	18	56	3	22	1	72	1.06
36325668--36325746	30	2.8	25	74	22	68	3	24	1	70	1.11
36325678--36325755	15	5.2	14	69	28	54	3	21	1	73	1.07
36327483--36327521	19	2.0	20	85	14	55	28	12	7	51	1.67
36331305--36331339	17	2.1	17	89	5	54	62	22	11	2	1.41
36339424--36339916	69	7.2	69	75	4	334	34	24	20	20	1.97
36340004--36340166	56	2.9	56	87	4	222	37	17	11	34	1.85
36340023--36340164	55	2.6	55	90	3	214	38	17	9	34	1.83
36343873--36344035	82	2.0	82	87	2	238	26	24	15	33	1.95
36347277--36347439	82	2.0	82	87	2	238	26	25	14	33	1.94
36349754--36349784	7	4.4	7	95	0	53	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36350957--36351088	67	2.0	67	90	0	210	28	31	18	21	1.96
36351176--36351296	57	2.1	58	86	9	165	24	23	19	32	1.97
36353779--36353842	21	3.0	22	68	9	60	20	20	21	37	1.94
36357604--36357641	18	2.2	17	86	9	51	57	0	7	34	1.28
36365300--36365342	20	2.2	20	87	8	61	60	0	2	37	1.10
36365330--36365443	28	4.3	26	76	13	101	64	2	0	32	1.14
36365487--36365558	19	3.9	18	75	12	65	65	4	1	29	1.20
36365469--36365548	37	2.1	37	84	6	99	62	3	2	31	1.26
36365487--36365558	9	7.8	9	80	11	65	65	4	1	29	1.20
36366020--36366061	20	2.1	21	86	8	61	30	2	0	66	1.04
36365964--36366061	47	2.0	49	80	7	112	30	3	2	64	1.20
36366065--36366146	28	2.9	27	79	15	78	34	1	3	60	1.22
36366003--36366185	28	6.6	28	66	21	73	34	2	1	61	1.18
36367950--36368001	13	3.4	15	76	17	54	48	1	0	50	1.12
36367944--36368007	29	2.1	31	85	5	87	45	1	1	51	1.20
36368015--36368045	15	2.0	16	93	6	55	61	0	0	38	0.96
36368093--36368143	17	3.0	17	73	21	61	56	1	0	41	1.10
36368285--36368326	20	2.1	20	95	0	75	23	0	21	54	1.44
36368527--36368588	23	2.5	23	82	10	70	41	3	9	45	1.53
36368527--36368582	26	2.2	24	84	12	69	44	3	8	42	1.53
36369002--36369044	23	2.0	22	82	17	54	67	9	9	13	1.42
36369205--36369245	17	2.4	17	95	0	73	60	12	4	21	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36373301--36373491	96	2.0	96	91	0	310	37	26	17	18	1.93
36377108--36377137	13	2.3	13	100	0	60	53	23	0	23	1.46
36387164--36387228	29	2.2	30	81	5	80	75	1	9	13	1.11
36387176--36387227	6	8.7	6	84	16	56	78	0	5	15	0.92
36387176--36387226	24	2.2	23	89	10	77	78	0	5	15	0.93
36399716--36399811	48	2.0	47	82	15	117	22	8	2	66	1.29
36402239--36402280	7	6.0	7	81	10	50	26	2	2	69	1.13
36406193--36406529	42	8.0	42	80	3	340	32	19	20	27	1.97
36406949--36407000	12	4.3	12	95	0	86	1	38	17	42	1.60
36411972--36412068	9	10.8	9	85	0	122	35	0	14	50	1.43
36411972--36412068	27	3.6	27	95	0	176	35	0	14	50	1.43
36412327--36412381	24	2.2	26	83	6	69	21	1	18	58	1.49
36412555--36412587	15	2.2	15	94	0	57	54	3	3	39	1.31
36413616--36413969	180	2.0	181	98	1	683	35	14	32	18	1.91
36413961--36414014	24	2.2	24	90	6	83	35	1	42	20	1.63
36417936--36418328	189	2.1	189	89	3	596	28	21	20	29	1.98
36429909--36429960	20	2.5	20	76	14	61	73	5	11	9	1.25
36429920--36429964	21	2.1	23	88	12	69	68	8	8	13	1.38
36432775--36433038	35	7.8	34	84	6	324	40	17	23	18	1.91
36432765--36433038	67	4.0	67	86	6	338	41	16	22	18	1.90
36432775--36433038	102	2.6	102	90	1	399	40	17	23	18	1.91
36433257--36433329	29	2.5	29	70	16	69	38	10	5	45	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36433295--36433332	14	2.8	13	88	7	58	36	13	5	44	1.66
36433440--36433472	10	3.4	10	83	8	50	57	9	12	21	1.62
36433958--36434003	23	2.0	24	83	12	60	52	8	0	39	1.33
36434663--36434703	23	1.9	22	85	14	59	26	48	4	19	1.69
36435218--36435423	63	3.3	63	79	2	216	26	27	21	23	1.99
36438576--36438632	28	2.0	28	96	0	105	36	10	15	36	1.82
36457284--36457351	27	2.5	27	100	0	136	25	32	11	30	1.91
36457554--36457604	26	1.9	27	84	4	68	54	0	0	45	0.99
36457495--36457750	127	2.0	127	87	5	369	47	5	4	41	1.48
36458355--36458390	6	6.0	6	100	0	72	33	50	0	16	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182