genome.fa.s21.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  30  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9820083--9820126	17	2.7	16	86	6	61	77	2	2	18	0.98
9823895--9824172	75	3.7	75	79	3	299	34	22	21	21	1.97
9824211--9824248	20	1.9	20	88	0	58	39	15	0	44	1.47
9830581--9830722	43	3.3	42	79	3	140	31	26	17	23	1.97
9831064--9831204	66	2.2	65	84	6	178	14	26	18	41	1.88
9832118--9832180	30	2.1	30	93	0	108	23	1	15	58	1.46
9832300--9832330	11	2.8	11	90	0	53	67	0	0	32	0.91
9835720--9835752	17	1.9	17	88	11	50	27	6	6	60	1.44
9837838--9838030	50	3.7	50	77	6	190	23	28	21	26	1.99
9837838--9838024	100	1.8	103	81	6	236	22	29	20	27	1.99
9839574--9839699	43	2.9	43	77	15	152	23	19	26	30	1.98
9840204--9840251	15	3.1	15	82	8	53	31	0	18	50	1.48
9840595--9840902	23	13.3	23	79	5	298	28	12	16	41	1.85
9840595--9840866	69	3.9	69	81	5	352	28	13	16	41	1.87
9840599--9840937	46	7.2	46	83	4	378	28	13	17	41	1.87
9846754--9847210	229	2.0	229	96	0	851	36	5	18	38	1.75
9847679--9847804	43	2.9	43	78	15	152	22	19	27	30	1.98
9848020--9848259	46	5.1	46	85	3	302	27	13	16	42	1.86
9848020--9848240	23	9.4	24	76	12	169	27	13	16	43	1.84
9848054--9848224	93	1.8	94	89	1	272	28	12	16	42	1.84
9859948--9859978	10	3.1	10	95	0	53	3	6	29	61	1.37
9877888--9878024	42	3.3	42	92	0	211	21	27	29	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9886422--9886483	26	2.4	26	94	0	106	38	16	11	33	1.84
9887187--9887254	34	2.0	34	82	5	84	22	26	23	27	1.99
9891114--9891180	12	5.5	12	72	8	55	71	2	4	20	1.17
9896092--9896123	10	3.2	10	90	0	55	40	6	0	53	1.26
9897562--9897657	45	2.1	45	92	3	158	37	13	12	36	1.83
9899876--9899913	9	4.2	9	93	0	58	36	21	34	7	1.82
9900110--9900143	16	2.1	16	100	0	68	44	0	11	44	1.40
9900586--9900639	23	2.4	24	81	12	69	42	3	1	51	1.30
9901848--9901915	34	2.0	35	85	2	93	29	22	26	22	1.99
9912276--9912637	43	8.5	43	71	12	164	26	21	21	30	1.98
9912264--9912639	87	4.4	83	77	12	338	25	21	21	31	1.98
9912300--9912682	46	8.8	45	72	12	245	25	20	21	31	1.98
9921431--9921532	51	2.0	50	98	1	195	21	31	13	32	1.92
9934255--9934356	50	2.0	50	98	0	195	31	11	27	29	1.92
9934701--9934798	27	3.5	28	90	2	135	26	13	28	31	1.94
9934729--9934811	27	3.0	27	87	5	96	30	12	25	32	1.92
9950148--9950252	39	2.6	39	86	5	122	24	22	27	24	2.00
9950108--9950271	40	4.1	40	80	12	169	25	23	27	24	2.00
9950108--9950258	79	1.9	80	82	6	191	25	23	27	23	2.00
9953132--9953224	41	2.3	41	88	1	134	31	3	12	52	1.55
9961017--9961056	19	2.2	18	95	4	71	42	15	2	40	1.60
9965716--9965775	29	2.1	29	93	0	102	33	3	16	46	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9967580--9967642	32	2.1	30	82	8	74	34	19	7	38	1.81
9970240--9970323	42	2.0	42	90	0	132	46	11	11	29	1.77
9970242--9970336	42	2.3	42	83	1	120	48	12	8	30	1.71
9970354--9970393	19	2.2	18	95	4	71	42	15	2	40	1.60
9973059--9973093	17	2.1	16	94	5	61	25	25	14	34	1.94
9980697--9980743	19	2.5	18	86	6	58	19	31	0	48	1.49
9983020--9983117	27	3.6	27	84	5	126	25	21	19	33	1.97
9983113--9983443	27	12.2	27	72	8	235	30	9	20	38	1.85
9983113--9983470	54	6.6	54	80	6	352	31	9	20	39	1.84
9983128--9983470	108	3.2	107	83	5	397	30	9	20	39	1.84
9983451--9983511	27	2.3	26	86	5	86	37	8	14	39	1.76
9983453--9983505	27	2.0	27	92	0	88	35	9	15	39	1.79
9986685--9986742	27	2.1	27	84	6	73	31	27	22	18	1.97
9986981--9987058	32	2.5	31	78	16	79	43	20	14	21	1.87
9987239--9987559	27	11.9	27	76	5	272	28	8	23	40	1.83
9987515--9987594	27	3.0	27	90	3	126	32	10	20	37	1.85
9989440--9989551	41	2.7	41	80	2	118	28	25	25	20	1.99
10002777--10002874	49	2.0	49	89	0	151	39	24	7	28	1.81
10007708--10007749	12	3.4	12	81	15	50	26	50	14	9	1.73
10008506--10008557	23	2.2	24	96	3	97	42	0	0	57	0.98
10009651--10009682	15	2.1	16	88	11	50	18	0	0	81	0.70
10016505--10016784	144	1.9	144	85	2	384	23	21	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10033664--10033723	30	2.0	30	83	3	75	40	0	38	21	1.54
10033858--10033898	21	2.0	21	85	9	57	46	0	29	24	1.53
10036716--10036749	4	8.5	4	100	0	68	50	26	0	23	1.50
10046193--10046311	43	2.8	43	81	8	111	36	27	13	22	1.92
10046215--10046311	42	2.3	43	83	1	115	37	26	12	23	1.91
10049948--10049981	17	1.9	17	88	5	50	44	5	11	38	1.65
10050742--10050774	11	2.8	12	86	4	50	33	3	12	51	1.54
10052099--10052133	10	3.4	10	88	7	52	45	2	0	51	1.16
10052098--10052136	16	2.5	16	87	4	53	43	2	0	53	1.14
10052096--10052128	11	3.1	11	91	8	59	45	0	0	54	0.99
10052051--10052167	58	1.9	59	84	6	155	42	3	3	50	1.36
10052276--10052325	25	2.0	25	84	7	66	46	10	4	40	1.56
10060271--10060460	51	3.8	50	81	2	211	22	15	30	32	1.95
10060471--10060560	44	2.0	45	89	2	137	23	16	23	36	1.94
10065031--10065059	12	2.4	12	100	0	58	24	17	27	31	1.97
10066078--10066143	32	2.1	32	100	0	132	28	15	9	46	1.76
10072744--10072794	15	3.4	15	94	0	93	54	11	7	25	1.63
10080375--10080415	18	2.3	18	87	4	57	73	9	0	17	1.09
10090873--10090918	18	2.6	18	82	0	56	39	8	30	21	1.84
10091563--10091587	7	3.6	7	100	0	50	60	12	0	28	1.32
10092654--10092716	29	2.1	30	91	2	101	66	0	0	33	0.92
10092763--10092813	22	2.3	22	100	0	102	39	0	33	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10094676--10094774	31	3.3	30	81	8	112	24	15	15	45	1.84
10095608--10095670	30	2.1	30	88	2	92	22	17	23	36	1.95
10096507--10096596	41	2.2	40	82	9	103	17	33	25	23	1.96
10098592--10098634	20	2.2	20	87	4	61	34	4	6	53	1.49
10098596--10098642	19	2.4	19	83	13	60	36	4	6	53	1.46
10102099--10102157	26	2.2	27	84	3	75	42	16	11	28	1.84
10102222--10102346	66	2.0	65	87	6	184	45	20	4	29	1.71
10104011--10104125	41	2.8	41	78	12	128	18	24	26	31	1.97
10110999--10111081	28	3.0	28	84	7	98	24	22	21	31	1.98
10113682--10113721	20	2.0	20	90	9	64	42	10	15	32	1.79
10114245--10114292	12	4.0	11	79	15	51	64	6	0	29	1.18
10134449--10134482	6	5.7	6	100	0	68	14	0	0	85	0.60
10138028--10138121	17	5.5	18	73	20	78	42	3	2	52	1.29
10138162--10138197	18	2.1	17	89	5	54	52	0	0	47	1.00
10146279--10146456	27	6.6	27	82	3	178	29	27	15	27	1.96
10150905--10150975	35	2.0	35	81	10	83	61	8	11	18	1.53
10154959--10155062	37	2.7	40	73	19	105	44	1	1	51	1.23
10155000--10155058	20	3.0	20	78	11	68	42	3	1	52	1.28
10161943--10161975	11	3.2	11	87	12	52	45	9	6	39	1.61
10162221--10162270	21	2.4	21	82	0	64	4	42	14	40	1.64
10168203--10168262	3	20.0	3	72	6	50	31	3	5	60	1.35
10168605--10168666	28	2.2	27	80	11	72	35	3	0	61	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10173395--10173441	18	2.4	19	82	10	51	59	12	0	27	1.34
10173777--10173830	25	2.1	26	82	3	65	33	1	3	61	1.25
10175481--10175550	32	2.2	32	94	0	131	28	21	15	34	1.94
10176338--10176378	18	2.2	19	91	4	66	43	4	21	29	1.73
10178262--10178298	18	2.1	18	94	0	65	56	5	2	35	1.36
10188235--10188362	69	1.9	67	85	6	177	52	3	3	40	1.36
10190032--10190223	30	6.5	30	76	10	180	19	24	11	43	1.85
10190032--10190188	29	5.3	29	79	11	167	19	26	12	42	1.86
10190016--10190222	89	2.3	89	84	3	256	21	24	12	42	1.86
10190183--10190251	31	2.3	31	84	2	86	23	18	11	46	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182