genome.fa.s21.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  174  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52962358--52962396	11	3.7	10	86	10	51	58	5	0	35	1.20
52965370--52965521	44	3.4	45	76	8	150	24	21	23	31	1.98
52983511--52983546	19	1.9	19	88	5	56	44	44	0	11	1.39
52983704--52983746	9	4.8	9	94	0	77	23	9	30	37	1.86
52983907--52983931	12	2.1	12	100	0	50	16	24	36	24	1.94
52985721--52985757	19	1.9	19	88	0	56	27	0	8	64	1.21
52987213--52987366	83	1.9	83	90	5	249	40	16	11	30	1.85
52987512--52987554	22	2.0	22	85	0	59	32	0	4	62	1.15
52992233--52992374	73	1.9	73	91	2	232	35	16	17	29	1.93
52992876--52992904	13	2.1	14	93	6	51	62	0	0	37	0.96
52992781--52992944	73	2.3	73	78	16	171	60	2	6	31	1.34
52994129--52994153	13	1.9	13	100	0	50	16	16	28	40	1.89
53001300--53001809	255	2.0	255	100	0	1020	45	9	14	29	1.77
53007670--53007730	15	4.3	15	77	10	65	36	42	8	13	1.74
53008040--53008081	10	4.1	10	81	12	50	76	9	4	9	1.15
53016017--53016051	3	11.7	3	90	0	52	2	0	28	68	1.04
53021605--53021746	59	2.4	60	79	10	150	23	16	13	45	1.83
53022105--53022219	60	1.9	60	85	1	158	50	11	14	23	1.75
53022178--53022337	31	5.3	31	77	8	159	44	10	18	26	1.82
53022108--53022337	61	3.8	59	75	8	187	46	10	17	25	1.80
53022113--53022337	120	1.9	122	83	3	303	45	10	17	26	1.81
53031021--53031169	74	2.0	74	98	0	289	30	25	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53034747--53034798	23	2.3	22	90	6	86	11	11	0	76	1.01
53037802--53037916	40	3.1	40	64	33	110	41	1	9	46	1.46
53037837--53037878	15	2.7	16	82	14	52	42	0	2	54	1.13
53037837--53037869	17	2.1	16	88	11	50	45	0	0	54	0.99
53037771--53037916	71	2.1	71	98	0	283	41	1	8	49	1.41
53038775--53038973	99	2.0	99	100	0	398	36	28	7	28	1.83
53039529--53039569	21	2.0	21	90	0	64	39	26	9	24	1.86
53044198--53044551	18	20.6	17	68	12	154	46	12	13	28	1.79
53044171--53044228	18	3.2	18	82	7	55	36	8	12	43	1.73
53044198--53044551	35	10.3	34	69	13	145	46	12	13	28	1.79
53044407--53044551	17	8.0	18	73	10	125	46	11	13	28	1.77
53044413--53044525	57	2.0	56	84	1	145	47	10	13	28	1.75
53044661--53044716	17	3.2	17	75	12	60	42	8	14	33	1.77
53044765--53044803	17	2.3	17	86	8	53	43	7	15	33	1.75
53045479--53045540	31	2.0	31	90	6	99	43	4	22	29	1.74
53045479--53045550	31	2.3	33	86	11	98	47	4	19	29	1.68
53045728--53047458	74	22.7	73	88	6	1586	35	20	16	27	1.94
53045728--53047450	222	7.5	225	84	8	1748	35	20	16	27	1.94
53047240--53047472	75	3.0	76	88	8	337	34	20	17	27	1.95
53048330--53048392	22	2.9	22	88	6	85	0	6	6	87	0.68
53048336--53048419	31	2.7	31	85	10	111	0	3	9	86	0.67
53048358--53048433	40	1.9	40	84	10	102	1	2	11	84	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53048330--53048419	1	90.0	1	73	0	72	0	4	8	86	0.69
53052942--53052980	20	2.0	20	94	0	69	10	33	17	38	1.84
53059456--53059964	17	29.6	17	68	14	197	46	11	12	29	1.77
53059540--53059720	70	2.6	69	94	3	319	44	11	12	30	1.78
53059674--53059721	18	2.7	17	83	6	51	43	14	10	31	1.79
53059826--53059938	57	2.0	56	84	1	145	47	10	13	28	1.75
53059883--53059964	35	2.3	35	87	0	119	50	13	12	24	1.76
53059947--53060132	43	4.4	42	64	17	114	42	13	12	31	1.81
53060043--53060090	15	2.9	18	82	17	68	43	12	14	29	1.82
53060170--53060205	18	1.9	19	88	5	56	36	13	13	36	1.85
53060204--53060255	17	2.9	18	72	16	63	36	11	13	38	1.81
53060204--53060254	16	3.0	16	77	11	57	37	11	13	37	1.82
53060275--53060329	28	1.9	28	81	3	65	32	7	14	45	1.72
53061545--53061578	17	2.0	17	88	0	50	35	0	0	64	0.94
53061562--53061670	11	10.4	11	70	22	74	36	2	0	60	1.11
53061544--53061671	40	3.2	40	89	3	211	35	2	0	62	1.08
53063694--53063947	123	2.1	123	86	3	350	29	15	23	31	1.95
53066618--53066656	16	2.4	16	95	0	69	15	30	17	35	1.91
53067123--53067180	23	2.5	22	72	8	62	34	0	18	46	1.50
53067138--53067195	28	2.1	28	93	6	100	31	0	18	50	1.48
53069143--53069211	16	4.6	16	74	17	58	34	5	0	59	1.21
53069149--53069212	15	4.4	14	79	16	69	35	6	0	57	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53069149--53069212	29	2.2	29	88	0	101	35	6	0	57	1.24
53072860--53072901	17	2.3	18	88	12	59	69	0	0	30	0.89
53076035--53076092	30	1.9	30	82	6	73	65	3	3	27	1.25
53076188--53076250	26	2.5	26	77	12	76	52	0	6	41	1.27
53077242--53077274	12	2.8	12	90	9	50	75	0	9	15	1.03
53078396--53078449	19	2.8	19	82	2	63	53	5	3	37	1.42
53079724--53079758	10	3.5	10	84	0	52	77	2	2	17	1.02
53080519--53080563	20	2.2	21	88	4	65	51	8	0	40	1.33
53080308--53080758	151	3.0	151	83	9	555	44	9	3	42	1.54
53085251--53085598	122	2.8	120	79	14	334	36	13	6	43	1.70
53085329--53085598	122	2.2	120	90	2	407	35	12	6	44	1.68
53087605--53087637	17	1.9	17	100	0	66	42	9	0	48	1.35
53090003--53090071	30	2.4	29	85	9	97	46	21	7	24	1.77
53094781--53094979	105	1.9	108	84	3	269	28	17	19	35	1.94
53095717--53095760	18	2.4	18	77	11	54	50	2	2	45	1.27
53095930--53095981	22	2.3	24	75	21	58	48	0	1	50	1.12
53102366--53102435	34	2.1	34	91	0	113	12	5	10	71	1.30
53102367--53102429	11	5.6	11	83	3	63	12	6	9	71	1.30
53102376--53102435	11	5.4	11	84	4	66	13	5	11	70	1.33
53102431--53102624	97	2.0	97	98	0	379	20	6	16	56	1.63
53108657--53108728	29	2.4	29	82	15	85	43	13	15	27	1.85
53116117--53116181	29	2.3	29	81	7	80	58	0	1	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53116409--53116448	19	2.1	19	90	0	62	17	15	10	57	1.64
53121208--53121240	17	1.9	17	100	0	66	36	6	12	45	1.66
53124047--53124097	26	2.0	26	88	7	77	74	0	0	25	0.82
53127977--53128070	38	2.5	38	76	10	102	28	19	13	38	1.90
53136760--53136806	24	2.0	24	86	0	67	48	17	4	29	1.65
53143540--53143573	13	2.7	12	90	9	50	8	0	41	50	1.34
53149405--53149486	41	2.0	41	97	0	155	32	17	9	40	1.82
53153450--53153496	25	1.9	24	95	4	85	40	27	6	25	1.80
53155769--53155805	19	2.1	18	90	10	58	21	21	8	48	1.76
53158838--53158953	57	2.0	57	98	0	223	31	13	18	37	1.90
53168687--53168757	25	2.8	26	75	10	76	28	26	14	30	1.95
53168732--53168936	72	2.8	72	86	0	266	35	21	16	25	1.95
53169972--53170008	15	2.5	15	86	0	56	48	0	0	51	1.00
53184521--53184585	19	3.3	19	80	16	62	24	6	3	66	1.29
53184521--53184588	10	7.0	9	76	17	57	23	5	2	67	1.26
53185165--53185189	13	1.9	13	100	0	50	24	24	20	32	1.98
53185102--53185218	61	1.9	61	83	0	153	23	19	14	41	1.89
53185742--53185773	15	2.0	17	88	11	50	34	3	6	56	1.40
53191499--53191548	25	2.0	25	84	7	66	68	4	6	22	1.29
53192809--53192916	43	2.5	43	77	7	119	25	21	22	30	1.98
53193015--53193175	50	3.2	50	69	0	142	24	22	22	30	1.99
53192974--53193254	100	2.8	98	85	4	364	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53193271--53193882	169	3.6	169	89	0	909	27	25	17	29	1.97
53193691--53193791	51	2.0	51	84	0	130	28	25	16	28	1.97
53194018--53194795	87	9.0	87	80	3	780	24	23	22	29	1.99
53194280--53194800	173	3.0	173	89	0	799	24	23	22	28	1.99
53196047--53196072	13	2.0	13	100	0	52	15	15	0	69	1.20
53206546--53206608	26	2.5	25	80	12	58	61	4	4	28	1.36
53208425--53208499	37	2.0	37	89	0	114	46	2	2	48	1.30
53208519--53208631	49	2.3	48	79	13	115	59	1	7	31	1.35
53208796--53208843	19	2.5	18	83	16	53	31	0	4	64	1.12
53208797--53208877	28	2.9	27	72	18	69	29	1	2	66	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182