genome.fa.s21.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  172  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52467075--52467120	22	2.1	22	88	8	67	15	15	0	69	1.19
52467275--52467320	22	2.1	22	88	8	67	15	15	0	69	1.19
52466993--52467379	200	1.9	199	99	0	765	14	22	12	50	1.76
52472663--52472814	53	2.9	53	85	2	207	41	13	8	36	1.76
52474406--52474463	26	2.3	26	85	8	75	46	10	12	31	1.74
52476056--52476098	22	1.9	23	86	13	63	69	2	4	23	1.18
52476241--52476288	8	6.1	8	90	9	73	0	12	0	87	0.54
52476242--52476276	7	4.9	7	96	3	61	0	11	0	88	0.51
52476576--52476615	3	13.7	3	85	15	57	0	30	0	70	0.88
52476576--52476615	11	3.4	12	87	12	57	0	30	0	70	0.88
52476969--52477084	29	4.0	29	75	1	115	37	6	22	33	1.79
52477380--52477422	22	1.9	23	86	13	63	69	2	4	23	1.18
52477564--52477598	11	3.4	11	92	7	56	0	11	0	88	0.51
52477875--52477899	13	1.9	13	100	0	50	0	36	0	64	0.94
52478017--52478056	18	2.1	20	86	9	57	15	15	5	65	1.44
52478245--52478307	29	2.2	28	94	5	108	41	9	19	30	1.83
52478189--52478307	58	2.0	59	81	1	141	40	9	21	29	1.84
52478488--52479553	77	13.8	78	85	7	877	36	20	16	26	1.94
52478507--52479572	151	6.9	149	85	7	1006	36	19	16	26	1.93
52478503--52479572	75	13.9	75	86	6	977	36	20	16	26	1.93
52478503--52479572	231	4.6	227	82	8	1094	36	20	16	26	1.93
52482095--52483180	543	2.0	543	100	0	2172	25	25	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52486997--52489376	297	8.0	297	99	0	4733	21	25	16	37	1.93
52496512--52496552	7	5.9	7	83	11	57	0	12	0	87	0.53
52496504--52496555	8	7.0	8	77	16	58	0	15	0	84	0.62
52496503--52496551	13	3.4	14	83	10	64	0	16	0	83	0.64
52496519--52496553	10	3.4	10	92	7	61	0	11	0	88	0.51
52498214--52498346	61	2.2	58	82	4	149	49	5	3	42	1.40
52498488--52498571	42	2.0	42	100	0	168	21	35	26	16	1.94
52499663--52499701	16	2.4	16	100	0	78	25	25	7	41	1.82
52499865--52499901	9	4.1	9	92	0	65	45	13	10	29	1.77
52500282--52500314	18	1.9	17	88	11	50	27	30	0	42	1.56
52503724--52503859	67	2.0	67	97	0	254	15	5	22	57	1.58
52519673--52519728	22	2.5	22	82	8	60	46	5	5	42	1.49
52521378--52521421	3	14.7	3	100	0	88	34	0	0	65	0.93
52528013--52528130	62	1.9	62	96	0	218	47	11	16	24	1.80
52531664--52531712	13	3.2	16	69	19	50	48	0	0	51	1.00
52531689--52531721	12	2.6	13	90	9	59	42	0	0	57	0.98
52531728--52531764	16	2.3	17	81	13	51	59	2	0	37	1.12
52534018--52534095	28	2.5	32	80	18	110	30	23	7	38	1.83
52539405--52539443	19	2.1	19	100	0	78	20	10	30	38	1.86
52539642--52539731	45	2.0	45	88	0	135	32	20	23	24	1.98
52543863--52543930	20	3.4	20	75	4	66	33	5	19	41	1.75
52544847--52544871	13	1.9	13	100	0	50	48	0	16	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52547370--52547429	21	2.8	21	87	5	84	31	28	25	15	1.95
52547356--52547464	23	5.0	23	78	10	95	36	24	20	18	1.94
52548151--52548175	11	2.3	11	100	0	50	28	20	0	52	1.47
52549191--52549224	11	3.0	11	91	4	50	0	23	0	76	0.79
52549303--52549336	13	2.4	14	90	9	52	61	0	2	35	1.11
52550337--52550398	25	2.5	25	81	5	72	16	20	22	40	1.91
52550462--52550539	26	3.0	26	80	9	70	21	20	20	37	1.95
52559473--52559539	26	2.6	25	76	2	80	14	23	22	38	1.92
52561096--52561212	31	3.7	31	85	3	155	29	9	17	42	1.81
52561331--52561434	43	2.4	43	86	1	145	27	17	23	31	1.97
52562839--52562897	25	2.4	25	94	0	109	20	6	32	40	1.78
52564995--52565147	43	3.6	43	81	0	182	26	25	16	31	1.97
52568162--52568194	17	1.9	17	88	11	50	6	12	0	81	0.85
52568172--52568196	13	1.9	13	100	0	50	8	12	0	80	0.92
52571463--52571508	3	15.3	3	81	0	56	34	0	34	30	1.58
52578066--52578143	25	2.9	27	73	11	79	37	26	6	29	1.81
52582501--52582555	21	2.6	21	82	0	65	29	10	32	27	1.91
52585110--52585316	70	3.0	69	90	4	308	28	16	14	41	1.87
52599185--52599232	20	2.3	22	79	13	57	20	6	12	60	1.54
52599912--52599959	20	2.3	22	79	13	57	20	6	12	60	1.54
52606998--52607033	18	2.0	18	88	0	54	44	11	11	33	1.75
52611473--52611572	28	3.4	28	84	8	112	34	16	3	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52611960--52612010	5	10.0	5	79	12	50	74	0	25	0	0.82
52611961--52612016	12	4.7	12	86	0	76	76	0	23	0	0.78
52612138--52612165	13	2.2	13	100	0	56	78	0	21	0	0.75
52612686--52612736	15	3.5	15	74	15	52	74	0	23	1	0.92
52612851--52612900	16	3.2	16	72	16	52	34	2	4	60	1.27
52615356--52615404	24	2.0	24	96	0	89	36	4	14	44	1.64
52615805--52615844	3	13.7	3	94	5	73	70	0	0	30	0.88
52618199--52618268	31	2.3	31	80	9	83	40	11	10	38	1.75
52619134--52619168	15	2.2	16	90	5	54	65	20	0	14	1.26
52620140--52620169	15	1.9	16	93	6	53	36	0	0	63	0.95
52620162--52620197	18	1.9	18	88	5	54	58	2	0	38	1.13
52620295--52620319	12	2.1	12	100	0	50	44	0	0	56	0.99
52623982--52624026	22	2.0	22	95	0	81	17	28	8	44	1.79
52628088--52628145	18	3.2	18	82	7	64	53	1	0	44	1.10
52629797--52629844	11	4.4	11	75	0	51	64	8	6	20	1.43
52635365--52635485	44	2.8	43	84	3	145	26	23	22	27	2.00
52644694--52644822	63	2.0	63	96	0	240	20	31	13	34	1.92
52650695--52650737	23	2.0	21	81	9	50	62	18	4	13	1.48
52650828--52650867	20	2.1	19	85	4	53	65	12	2	20	1.38
52652114--52652148	16	2.1	16	89	5	52	8	5	28	57	1.52
52654208--52654262	26	2.1	25	86	10	74	49	10	1	38	1.49
52654355--52654424	27	2.5	28	76	4	79	24	17	11	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52666948--52666979	15	2.1	15	94	0	55	68	9	6	15	1.36
52672374--52672432	25	2.4	25	91	0	91	16	23	18	40	1.91
52672387--52672478	22	4.0	22	80	9	96	16	21	18	43	1.88
52678275--52678311	15	2.5	15	95	0	65	45	24	10	18	1.81
52685367--52685411	6	7.3	6	80	5	54	44	13	20	22	1.85
52685724--52685781	20	2.8	20	69	27	50	44	18	5	31	1.72
52685727--52685805	40	2.0	40	90	9	126	43	18	5	32	1.72
52687604--52687637	16	2.1	16	94	0	59	14	11	2	70	1.27
52699788--52699834	21	2.2	21	88	0	67	25	19	14	40	1.90
52702444--52702478	13	2.7	13	90	0	52	31	11	17	40	1.85
52706681--52706710	15	2.0	15	100	0	60	33	0	6	60	1.23
52709138--52709233	25	3.8	25	77	10	90	17	27	18	36	1.94
52709315--52709392	25	3.1	25	75	5	68	24	24	20	30	1.98
52710056--52710134	40	2.0	39	100	0	149	25	27	27	17	1.97
52721368--52721439	32	2.2	32	85	9	94	20	22	37	19	1.94
52721673--52721707	17	2.0	18	88	5	54	25	11	11	51	1.71
52721781--52721831	26	2.0	26	92	3	86	23	21	21	33	1.97
52727321--52727407	26	3.2	28	90	9	130	37	5	0	56	1.23
52727850--52727902	27	2.0	27	88	3	81	43	1	5	49	1.37
52727860--52727911	27	1.9	27	88	7	79	44	1	5	48	1.38
52727889--52727947	19	3.2	19	80	4	84	49	0	11	38	1.40
52728509--52728560	27	1.9	27	100	0	104	15	32	23	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52728511--52728569	27	2.2	27	90	0	91	15	28	27	28	1.96
52728621--52728690	28	2.5	28	92	0	113	51	0	12	35	1.40
52730724--52730771	24	2.0	24	100	0	96	41	4	8	45	1.53
52730923--52730978	26	2.2	26	96	0	103	42	8	0	48	1.34
52731123--52731244	4	30.0	4	76	18	94	71	0	28	0	0.86
52731188--52731264	13	5.7	13	71	17	50	71	0	28	0	0.86
52731137--52731304	76	2.2	73	87	10	234	70	0	29	0	0.87
52731131--52731304	71	2.4	73	82	13	207	70	0	29	0	0.87
52734690--52734716	11	2.5	11	100	0	54	37	7	14	40	1.74
52738067--52738169	27	3.8	27	71	12	86	18	33	22	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182