genome.fa.s21.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  101  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30435595--30435673	25	3.2	25	79	0	95	32	13	18	34	1.91
30438747--30439043	50	5.8	50	83	5	285	27	19	28	23	1.99
30441554--30441616	31	2.0	31	100	0	126	46	9	15	28	1.78
30446194--30446237	23	1.9	23	100	0	88	40	18	6	34	1.77
30447684--30447813	43	3.2	43	63	22	116	47	6	11	33	1.66
30447658--30447830	79	2.2	79	98	0	337	49	5	11	32	1.63
30448086--30448143	28	2.0	29	83	9	75	53	6	0	39	1.28
30463342--30463391	25	2.0	25	84	7	66	76	6	2	16	1.08
30463911--30463950	21	1.9	21	85	10	55	15	25	25	35	1.94
30468360--30468442	40	2.1	40	100	0	166	31	19	20	28	1.97
30472187--30472306	39	3.1	39	98	0	231	20	15	10	54	1.70
30472617--30473103	29	16.3	30	89	6	758	37	10	0	51	1.40
30473149--30473237	44	2.0	44	87	6	128	10	50	3	35	1.53
30475046--30475094	24	2.0	24	96	0	89	34	10	18	36	1.85
30475054--30475127	19	3.4	22	80	16	82	36	6	16	40	1.75
30475093--30475137	23	2.0	23	86	4	65	33	4	15	46	1.66
30475551--30475594	18	2.5	18	85	10	56	34	0	0	65	0.93
30475551--30475595	15	3.1	14	87	9	56	35	0	0	64	0.94
30475598--30475673	33	2.3	34	93	4	136	35	10	13	40	1.79
30475889--30476004	51	2.3	52	80	7	132	31	6	6	56	1.48
30481864--30482003	44	3.2	44	68	8	131	24	27	26	21	1.99
30481838--30481980	43	3.3	43	67	7	117	24	28	28	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30481816--30482305	88	5.6	88	87	0	667	27	27	24	20	1.99
30482307--30482659	44	8.2	44	80	8	384	28	17	25	28	1.97
30482345--30482598	126	2.0	126	92	0	427	30	16	24	27	1.97
30482326--30482634	170	1.8	170	89	2	487	29	16	25	28	1.97
30482987--30483094	44	2.5	44	81	3	119	30	20	19	29	1.97
30483523--30483587	21	3.1	21	95	0	121	38	9	12	40	1.75
30483522--30483598	21	3.8	19	82	12	100	37	9	14	38	1.78
30483577--30483621	23	2.0	23	86	4	65	40	2	17	40	1.62
30483587--30483631	23	2.0	23	82	4	56	35	2	15	46	1.58
30484053--30484094	12	3.2	13	86	13	50	30	0	2	66	1.04
30484058--30484095	12	2.8	13	88	11	51	34	0	0	65	0.93
30485888--30485932	22	2.1	22	87	4	65	55	15	26	2	1.52
30485901--30485972	21	3.4	21	80	1	72	51	16	27	4	1.63
30493667--30493705	18	2.2	19	90	9	64	25	12	0	61	1.31
30499459--30499488	13	2.3	13	94	0	51	50	23	16	10	1.75
30505766--30505947	23	8.0	23	85	3	190	19	21	22	36	1.95
30505767--30505946	46	4.0	46	85	4	215	18	21	22	36	1.95
30508604--30508660	28	2.0	28	86	6	80	54	12	8	24	1.65
30509957--30509997	19	2.3	17	87	8	55	17	7	0	75	1.02
30511941--30511976	18	2.0	18	94	0	63	30	0	5	63	1.17
30511936--30511979	18	2.5	17	79	13	54	34	0	6	59	1.24
30518749--30518814	28	2.3	29	84	10	82	51	1	10	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30519493--30519552	25	2.5	24	78	19	63	33	0	6	60	1.23
30521533--30521592	25	2.5	24	78	19	63	33	0	6	60	1.23
30524470--30524503	12	2.8	12	86	4	50	23	0	8	67	1.18
30524678--30524718	14	2.7	15	88	7	57	26	4	2	65	1.25
30524707--30524740	10	3.2	10	88	12	50	38	0	0	61	0.96
30533142--30533201	27	2.2	27	96	0	111	31	28	18	21	1.97
30534957--30535272	97	3.1	98	75	11	305	31	16	19	32	1.94
30534928--30535409	110	4.5	110	77	12	376	30	17	19	33	1.95
30535187--30535412	112	2.0	113	86	5	321	26	17	18	37	1.93
30535365--30535454	45	2.0	45	95	0	162	17	20	28	33	1.95
30535253--30535565	158	2.0	156	86	1	439	24	18	20	36	1.95
30535528--30535743	112	2.0	106	81	6	245	31	17	19	31	1.95
30538649--30538767	56	2.2	55	82	5	143	57	2	11	28	1.47
30542927--30542994	33	2.1	33	97	0	127	30	27	26	14	1.95
30544227--30544261	17	2.1	17	100	0	70	31	34	11	22	1.90
30546364--30546415	27	1.9	27	92	0	86	30	0	17	51	1.45
30557265--30558370	549	2.0	553	90	4	1759	32	12	20	34	1.90
30558474--30558538	32	2.0	32	93	0	112	26	3	16	53	1.58
30559926--30559965	20	2.0	20	90	0	62	42	12	12	32	1.80
30563984--30564020	11	3.1	13	81	18	53	67	0	0	32	0.91
30565254--30565293	9	4.3	9	81	6	53	25	42	2	30	1.68
30567185--30567292	37	3.0	33	74	16	90	52	3	2	40	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30567176--30567233	31	1.9	29	83	13	73	53	5	3	37	1.40
30568167--30568222	23	2.6	21	86	11	69	55	0	5	39	1.23
30568182--30568231	11	4.3	12	92	7	86	56	0	4	40	1.18
30568182--30568272	23	4.2	23	75	13	102	59	0	4	36	1.18
30568181--30568231	12	4.3	12	82	12	70	56	0	3	39	1.18
30568256--30568301	17	2.7	17	79	0	56	60	0	0	39	0.97
30568194--30568290	41	2.4	41	84	6	142	62	0	3	34	1.11
30569626--30569665	20	2.0	20	95	0	71	25	22	20	32	1.98
30573264--30573364	52	1.9	52	95	0	184	24	18	23	32	1.97
30578306--30578641	168	2.0	168	100	0	672	37	7	24	30	1.82
30587216--30587274	14	4.1	14	79	14	66	62	0	1	35	1.05
30587545--30587611	30	2.4	28	88	11	95	43	2	0	53	1.16
30587714--30587773	30	1.9	31	90	6	95	61	0	38	0	0.96
30587728--30587982	39	6.5	39	77	14	251	68	0	31	0	0.90
30587754--30587973	80	2.7	80	98	0	422	70	0	29	0	0.88
30593597--30593638	18	2.3	19	88	12	70	19	50	2	28	1.60
30594401--30594501	3	33.7	3	80	11	109	65	26	0	7	1.20
30594500--30594525	3	8.7	3	100	0	52	69	0	0	30	0.89
30594754--30594846	27	3.4	27	85	5	109	13	26	31	27	1.94
30594902--30594973	26	2.5	29	86	10	96	45	0	9	44	1.36
30597644--30597697	19	2.7	19	85	5	72	57	9	0	33	1.31
30597849--30597874	3	8.7	3	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30601189--30601277	30	3.0	29	81	3	106	13	28	33	24	1.93
30603005--30603075	6	11.8	6	88	8	101	81	2	1	14	0.87
30603012--30603075	9	7.1	9	71	13	51	82	3	1	12	0.85
30603038--30603075	15	2.5	16	83	12	53	81	5	2	10	0.94
30604695--30604814	22	5.2	21	73	20	73	71	5	3	20	1.19
30604703--30604810	37	3.0	36	73	20	100	72	4	3	19	1.18
30604700--30604793	12	7.7	12	70	22	63	71	5	4	19	1.22
30608597--30608623	5	5.4	5	100	0	54	81	0	0	18	0.69
30611915--30611945	3	10.3	3	100	0	62	0	35	0	64	0.94
30613222--30613263	19	2.2	19	87	8	59	38	0	2	59	1.10
30613795--30613827	12	2.6	13	90	4	50	18	6	0	75	1.00
30621134--30621187	28	1.9	28	96	0	99	35	7	11	46	1.67
30623417--30623454	18	2.0	21	85	15	55	28	0	15	55	1.41
30632125--30632378	27	9.5	26	78	10	219	43	18	17	20	1.88
30632125--30632375	80	3.1	77	83	7	306	44	18	17	19	1.87
30632125--30632376	54	4.7	51	79	9	256	44	19	17	19	1.87
30639239--30639481	59	4.1	59	77	2	218	30	21	11	36	1.89
30642284--30644256	986	2.0	986	100	0	3946	31	9	22	36	1.86
30644280--30644322	21	2.1	21	87	8	63	16	4	23	55	1.59
30647412--30647436	11	2.3	11	100	0	50	48	52	0	0	1.00
30653289--30653317	10	3.0	10	95	5	51	31	37	0	31	1.58
30662307--30662347	21	2.0	21	95	0	73	39	14	12	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30667777--30667809	15	2.3	15	94	5	59	33	6	0	60	1.21
30676218--30676265	25	2.0	25	88	12	73	16	10	2	70	1.24
30676245--30676279	12	3.0	12	87	4	54	28	8	0	62	1.24
30676643--30676841	100	2.0	103	87	3	296	31	8	21	39	1.83
30679292--30679360	33	2.2	31	89	10	104	30	21	24	23	1.99
30686112--30686160	17	2.8	17	75	3	53	16	26	36	20	1.93
30686713--30686778	32	2.1	31	86	13	91	30	19	25	24	1.98
30692615--30692647	13	2.4	14	85	5	50	69	0	3	27	1.03
30698032--30698104	24	3.0	24	80	11	85	24	20	17	36	1.94
30698033--30698144	25	4.5	26	76	19	78	25	23	20	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182