genome.fa.s21.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  163  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50103495--50103532	3	12.7	3	100	0	76	65	0	0	34	0.93
50103703--50103749	22	2.1	22	96	0	85	14	12	36	36	1.85
50107449--50107500	27	2.0	27	85	11	72	11	11	3	73	1.23
50115859--50115943	9	9.4	9	83	5	109	40	22	10	27	1.87
50115983--50116011	6	4.8	6	100	0	58	17	0	17	65	1.27
50115967--50116024	18	3.0	20	82	12	66	22	3	12	62	1.45
50120188--50120222	18	1.9	18	88	0	52	42	0	17	40	1.49
50120251--50120293	23	1.9	22	85	4	59	53	4	2	39	1.34
50120420--50120501	3	27.0	3	73	7	67	64	4	3	26	1.30
50122838--50122885	25	2.0	24	91	4	78	41	22	20	14	1.89
50122834--50122899	24	2.7	26	81	9	84	40	21	22	15	1.90
50127833--50127863	16	1.9	16	93	0	53	0	0	16	83	0.64
50127971--50128000	3	10.3	3	92	7	53	33	36	0	30	1.58
50134124--50134195	31	2.3	30	83	11	83	54	0	2	43	1.15
50134758--50134792	18	1.9	18	88	0	52	48	5	5	40	1.51
50135777--50135806	5	6.0	5	100	0	60	80	0	0	20	0.72
50135814--50135909	46	2.1	47	84	5	124	12	61	8	17	1.55
50147245--50147286	18	2.4	19	88	11	63	35	2	0	61	1.09
50154582--50154626	3	15.0	3	80	0	54	28	2	4	64	1.25
50156114--50156221	56	1.9	55	90	1	171	37	9	12	39	1.76
50159700--50160002	124	2.5	124	84	3	409	44	7	17	29	1.77
50160873--50160912	16	2.3	17	83	16	55	52	0	35	12	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50166162--50166230	24	2.9	23	76	6	66	15	21	20	42	1.89
50170065--50170156	37	2.5	37	79	8	98	31	22	3	42	1.70
50171018--50171067	25	2.0	25	92	0	82	46	2	0	52	1.12
50175977--50176059	24	3.4	24	71	12	62	18	26	20	34	1.95
50176122--50176172	27	2.0	27	85	14	72	21	23	19	35	1.96
50176158--50176263	24	4.3	24	72	9	88	16	24	21	36	1.94
50176169--50176277	24	4.4	24	72	9	67	16	25	21	36	1.94
50176198--50176317	25	4.8	24	74	9	82	18	28	20	33	1.96
50180289--50180317	3	9.7	3	100	0	58	68	0	0	31	0.89
50190021--50190055	16	2.2	16	100	0	70	34	31	0	34	1.58
50192094--50192237	42	3.4	42	79	9	152	15	22	16	44	1.86
50192147--50192205	21	2.8	21	67	10	57	18	23	15	42	1.88
50199974--50200011	13	2.8	14	80	19	53	65	5	7	21	1.38
50201895--50201932	19	2.0	19	94	0	67	34	10	31	23	1.89
50204508--50204546	19	2.0	20	90	5	62	28	10	12	48	1.74
50204553--50204712	80	2.0	80	97	0	302	31	13	11	43	1.80
50209201--50209268	32	2.1	33	81	8	86	26	7	16	50	1.71
50212968--50213065	47	2.1	47	100	0	196	43	10	16	29	1.80
50219551--50219575	12	2.1	12	100	0	50	0	24	8	68	1.16
50220204--50220266	29	2.1	30	82	8	76	55	4	6	33	1.46
50221143--50221175	15	2.2	15	94	0	57	63	12	0	24	1.28
50223304--50224019	44	16.7	43	73	9	489	28	21	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50223304--50224106	84	9.3	84	76	10	524	28	22	20	29	1.98
50223304--50223587	128	2.2	128	89	0	433	29	21	20	28	1.98
50223379--50224019	128	5.0	131	81	7	361	28	21	19	30	1.98
50223649--50224110	89	5.3	86	73	11	245	27	22	20	29	1.98
50223304--50224108	44	18.7	44	71	16	383	28	22	20	29	1.98
50236004--50236036	15	2.2	15	94	0	57	63	12	0	24	1.28
50236352--50236431	40	1.9	43	82	10	103	53	5	6	35	1.48
50240057--50240102	4	11.8	4	82	13	60	76	0	0	23	0.79
50240057--50240115	17	3.3	18	83	11	68	74	0	1	23	0.91
50240061--50240115	23	2.3	23	82	17	69	74	0	1	23	0.91
50240954--50241069	58	2.0	58	96	0	214	38	7	16	37	1.77
50244319--50244438	33	3.6	33	77	6	127	24	39	5	31	1.77
50244391--50244566	66	2.7	65	81	10	198	26	39	3	30	1.72
50252157--50252217	24	2.6	24	79	5	81	47	0	0	52	1.00
50257602--50257628	9	3.0	9	100	0	54	44	0	0	55	0.99
50262852--50262898	17	2.8	17	83	6	51	78	4	4	12	1.04
50265249--50265296	25	1.9	25	86	0	69	68	0	0	31	0.90
50269214--50269254	21	2.0	21	95	0	73	31	2	0	65	1.05
50273547--50273591	22	2.0	22	86	0	63	53	0	0	46	1.00
50273610--50273650	13	2.9	15	79	20	52	58	0	0	41	0.98
50276547--50276673	67	1.9	67	81	12	154	30	7	2	59	1.39
50278898--50278939	11	3.8	11	87	0	66	59	9	9	21	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50278890--50278938	22	2.2	22	81	0	62	63	10	8	18	1.50
50278899--50278945	22	2.2	22	84	3	60	63	6	10	19	1.47
50284329--50284382	18	3.0	19	79	15	62	81	1	16	0	0.78
50284329--50284384	5	12.2	5	78	17	52	80	1	17	0	0.80
50284329--50284390	23	2.7	22	79	16	72	79	3	16	1	0.95
50287623--50287765	47	3.1	47	91	3	218	34	6	21	37	1.79
50289247--50289277	3	10.3	3	92	0	53	64	0	0	35	0.94
50290599--50290666	16	4.2	16	90	7	102	27	0	33	38	1.57
50290599--50290666	32	2.1	32	94	0	118	27	0	33	38	1.57
50290796--50291105	157	2.0	157	94	0	539	44	3	4	47	1.41
50290859--50291108	76	3.1	81	63	24	186	46	4	3	45	1.39
50290842--50291163	157	2.0	155	81	5	349	46	4	4	44	1.44
50295303--50295391	25	3.7	23	65	8	61	50	3	7	38	1.48
50295299--50295381	25	3.3	25	72	5	69	49	3	7	39	1.48
50297146--50297242	44	2.2	45	76	12	101	34	20	17	27	1.95
50297255--50297790	44	12.1	44	72	8	399	25	23	19	31	1.98
50297329--50297790	88	5.2	88	89	2	642	25	22	19	31	1.98
50297155--50297781	133	4.7	133	78	7	533	27	23	18	30	1.98
50309577--50309635	25	2.4	24	80	8	66	54	1	3	40	1.27
50309701--50309763	21	3.0	21	79	11	65	61	6	4	26	1.40
50311448--50311492	14	3.1	14	78	6	54	64	4	4	26	1.32
50314638--50314723	36	2.4	36	94	0	154	26	18	27	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50316093--50316128	18	2.0	18	100	0	72	22	22	22	33	1.97
50316259--50316294	18	2.0	18	100	0	72	22	22	22	33	1.97
50316009--50316344	166	2.0	166	98	0	654	34	15	21	28	1.94
50318610--50318768	42	3.7	42	76	11	149	33	11	20	35	1.88
50318650--50318753	47	2.2	49	85	3	140	35	10	19	34	1.86
50326508--50326542	17	2.1	17	89	5	54	48	0	8	42	1.33
50326506--50326545	16	2.5	15	84	11	53	42	0	7	50	1.30
50326527--50326676	75	1.9	80	84	9	204	45	3	5	46	1.42
50328312--50328345	17	2.0	17	94	0	59	44	11	0	44	1.40
50330644--50330707	26	2.4	27	94	5	112	40	10	0	48	1.38
50330711--50330737	14	1.9	14	100	0	54	62	14	7	14	1.51
50331367--50331438	19	3.2	23	65	31	64	41	15	0	43	1.46
50331352--50331440	45	2.0	45	100	0	178	40	15	0	43	1.47
50331446--50331495	15	3.1	15	85	8	64	42	0	14	44	1.44
50331464--50331501	18	2.1	18	90	0	58	47	0	13	39	1.42
50331759--50331822	28	2.4	28	94	5	114	48	0	10	40	1.38
50333518--50333543	13	2.0	13	100	0	52	84	0	0	15	0.62
50334827--50334858	10	3.2	10	95	0	55	43	9	0	46	1.35
50335017--50335061	22	2.0	22	91	0	72	17	22	4	55	1.60
50337415--50337479	25	2.6	26	74	16	73	30	21	26	21	1.98
50337844--50337886	18	2.5	17	82	14	52	34	11	16	37	1.85
50338082--50338118	5	7.2	5	90	3	56	37	21	2	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50341034--50341097	30	2.2	29	81	10	76	29	28	6	35	1.82
50341041--50341097	30	1.9	30	85	3	80	29	24	7	38	1.82
50342670--50342699	9	3.2	9	95	4	51	30	0	10	60	1.30
50343509--50343615	37	2.9	37	78	12	105	42	12	21	23	1.86
50343920--50343957	15	2.4	16	91	4	60	50	5	0	44	1.24
50344339--50344399	9	6.2	9	78	17	52	70	1	3	24	1.11
50351874--50351918	17	2.7	16	82	6	54	40	4	0	55	1.20
50357503--50357528	13	2.0	13	100	0	52	23	7	15	53	1.67
50363298--50363414	21	5.6	21	83	0	135	43	15	22	18	1.87
50363303--50363415	42	2.7	42	90	2	165	45	15	21	18	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182