genome.fa.s21.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  12  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4067060--4067094	18	1.9	18	88	0	52	82	2	2	11	0.88
4080436--4080519	34	2.5	35	84	5	109	29	26	19	25	1.98
4083329--4083368	12	3.3	12	83	13	55	77	0	15	7	0.98
4084833--4084868	18	2.0	18	100	0	72	38	22	22	16	1.93
4087082--4087160	34	2.3	34	86	0	104	30	24	21	24	1.99
4089307--4089389	34	2.4	35	84	4	98	31	26	16	25	1.97
4092212--4092251	18	2.2	19	90	4	64	77	2	15	5	1.04
4093712--4093747	18	2.0	18	100	0	72	38	22	22	16	1.93
4096081--4096159	34	2.3	34	84	4	97	29	24	24	22	1.99
4102758--4102831	37	2.0	37	94	0	130	22	17	13	45	1.83
4106173--4106333	29	5.6	29	77	5	173	19	26	14	39	1.90
4106170--4106342	58	3.0	57	78	6	204	21	26	15	37	1.92
4106174--4106361	58	3.2	58	74	10	186	19	25	14	40	1.89
4109925--4109958	17	2.0	17	100	0	68	47	11	17	23	1.81
4111554--4111605	20	2.7	20	87	3	70	21	28	15	34	1.94
4120775--4120915	35	4.0	35	85	0	183	19	13	27	39	1.89
4121622--4121677	20	2.8	20	88	0	76	48	0	30	21	1.51
4123001--4123078	25	3.2	25	77	18	85	35	2	23	38	1.68
4125478--4125520	18	2.4	19	76	11	54	44	2	6	46	1.43
4125705--4125755	19	2.6	21	79	17	65	49	0	1	49	1.12
4125703--4125751	17	2.7	18	87	6	64	44	0	2	53	1.12
4125887--4125939	17	3.1	17	73	10	54	73	3	1	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4126324--4126417	49	1.9	49	85	6	129	26	19	10	43	1.83
4132721--4132770	19	2.6	18	75	12	55	48	12	18	22	1.80
4133593--4133756	5	32.8	5	100	0	328	40	0	0	59	0.97
4134490--4134600	41	2.8	40	74	9	111	27	16	21	34	1.95
4140710--4141077	5	73.6	5	100	0	736	40	0	0	59	0.97
4141901--4142822	461	2.0	461	98	0	1781	34	10	16	38	1.82
4143867--4143943	26	3.0	25	84	5	100	32	15	10	41	1.81
4144084--4144112	12	2.3	13	94	5	51	13	24	0	62	1.32
4150055--4150176	49	2.5	47	75	6	120	42	20	22	13	1.88
4151359--4151811	51	8.9	51	91	0	656	29	16	25	28	1.97
4151384--4151811	152	2.8	152	89	1	633	29	17	25	27	1.97
4151359--4151811	203	2.2	204	88	0	683	29	16	25	28	1.97
4151827--4151934	44	2.5	44	86	6	139	25	22	21	30	1.98
4153614--4153665	20	2.5	20	81	3	68	38	7	0	53	1.30
4153643--4153690	25	1.9	25	91	0	78	31	8	2	58	1.39
4154150--4154215	33	1.9	35	85	11	93	33	3	7	56	1.43
4164205--4164272	28	2.4	28	80	2	64	38	16	10	35	1.82
4165132--4165172	18	2.4	17	84	8	55	48	4	9	36	1.58
4169144--4169228	40	2.1	40	86	4	118	30	4	5	58	1.42
4170850--4170973	63	2.0	62	82	1	149	32	11	7	49	1.66
4173591--4173619	5	5.8	5	100	0	58	82	0	17	0	0.66
4173916--4173973	30	1.9	30	85	0	80	46	6	5	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4176684--4176801	50	2.3	52	83	2	150	40	12	13	33	1.82
4178013--4178051	18	2.2	18	86	9	53	30	2	5	61	1.31
4184700--4184751	16	3.2	16	81	5	52	23	0	5	71	1.07
4189800--4189879	41	2.0	41	92	0	133	32	22	18	26	1.97
4195643--4195953	151	2.0	154	92	3	520	44	3	5	46	1.42
4195887--4195928	15	2.7	16	82	14	52	52	2	0	45	1.13
4195896--4195937	15	2.9	15	82	10	52	52	0	0	47	1.00
4195709--4195937	76	3.0	76	62	15	175	47	3	3	45	1.37
4195923--4196211	44	7.3	38	64	16	115	49	5	2	42	1.40
4196125--4196176	15	3.6	15	80	12	56	53	1	0	44	1.11
4195890--4196301	120	3.4	119	93	2	702	50	5	2	41	1.39
4196342--4196389	26	1.9	25	84	16	64	52	2	0	45	1.12
4196297--4196525	92	2.5	92	83	8	236	47	3	3	44	1.38
4203945--4203992	18	2.7	18	93	0	78	41	12	12	33	1.80
4206882--4206920	19	2.1	19	95	0	69	51	23	25	0	1.49
4207733--4207760	14	2.0	14	100	0	56	35	7	14	42	1.73
4214200--4214241	18	2.3	18	80	8	50	59	4	0	35	1.19
4214617--4214676	30	2.0	30	84	12	79	18	31	23	26	1.97
4216849--4216903	6	9.2	6	100	0	110	67	0	0	32	0.91
4222282--4222344	24	2.6	25	82	2	74	25	22	25	26	2.00
4225427--4225471	22	2.0	22	100	0	90	28	4	13	53	1.59
4226896--4226970	26	2.9	26	84	2	107	33	16	9	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4228572--4228628	23	2.5	23	73	0	60	59	17	8	14	1.59
4239182--4239221	11	3.7	11	96	3	73	57	7	17	17	1.62
4242234--4242419	51	3.7	51	77	7	209	31	25	17	25	1.97
4242228--4242416	101	1.9	102	85	3	247	31	25	17	25	1.97
4253384--4253464	38	2.2	38	90	2	128	37	7	41	13	1.73
4265916--4266107	50	3.7	51	78	10	187	22	27	22	27	1.99
4279646--4279855	40	5.3	39	87	5	233	24	21	28	25	1.99
4279593--4279855	120	2.2	120	81	4	300	25	21	27	25	1.99
4279646--4279890	80	3.1	80	81	3	228	25	21	28	24	1.99
4287596--4287805	40	5.3	39	87	5	233	24	21	28	25	1.99
4287543--4287805	120	2.2	120	81	4	300	25	21	27	25	1.99
4287596--4287840	80	3.1	80	81	3	228	25	21	28	24	1.99
4291558--4291616	22	2.7	22	80	15	77	47	16	3	32	1.64
4292914--4292955	22	1.9	22	85	0	57	47	23	0	28	1.52
4297138--4297168	16	1.9	16	100	0	62	25	12	22	38	1.90
4301300--4301484	79	2.3	82	84	7	238	25	27	22	24	2.00
4301281--4301484	40	5.1	40	82	8	238	25	27	22	25	2.00
4304251--4304369	59	2.0	59	95	0	211	26	21	17	33	1.96
4309374--4309558	79	2.3	82	84	7	238	25	27	22	24	2.00
4309355--4309558	40	5.1	40	82	8	238	25	27	22	25	2.00
4313492--4313551	30	2.0	30	87	6	86	48	10	8	33	1.67
4326130--4326477	40	8.7	40	92	1	572	31	19	27	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4328435--4328459	12	2.1	12	100	0	50	16	16	36	32	1.90
4335194--4335377	40	4.6	40	83	6	205	23	21	27	27	1.99
4335194--4335374	80	2.3	81	84	9	230	23	21	27	27	1.99
4336801--4336879	37	2.1	37	88	4	115	25	30	18	25	1.98
4336998--4337593	47	12.4	47	94	3	933	28	29	8	33	1.87
4336998--4337589	49	12.3	49	93	3	933	28	29	8	33	1.87
4339420--4339523	53	2.0	53	100	0	208	33	25	14	26	1.94
4341140--4341241	50	2.0	51	88	1	152	33	15	24	26	1.95
4341321--4341381	27	2.3	27	86	8	88	32	14	26	26	1.95
4341455--4341582	27	4.7	27	73	3	114	39	7	22	30	1.81
4343006--4343086	26	3.2	25	76	15	76	34	9	12	43	1.76
4343050--4343102	26	2.0	27	85	3	72	30	11	15	43	1.81
4345940--4345990	20	2.6	19	84	6	66	19	25	15	39	1.91
4345940--4346005	20	3.3	19	74	16	53	22	24	15	37	1.92
4349967--4350115	40	3.7	40	98	0	271	19	28	20	30	1.97
4364958--4365008	25	2.0	25	96	0	93	33	19	17	29	1.95
4365664--4365704	18	2.3	18	83	8	57	68	0	7	24	1.15
4365661--4365711	13	4.2	12	78	9	50	66	0	7	25	1.18
4365663--4365712	19	2.6	19	78	6	57	66	0	8	26	1.19
4372291--4372334	22	2.0	22	82	4	54	59	6	4	29	1.44
4372709--4372753	23	1.9	24	81	4	56	60	6	2	31	1.35
4374379--4374463	27	3.1	27	86	6	127	42	20	17	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4376020--4376246	27	8.4	27	85	6	264	18	16	21	43	1.88
4376021--4376246	54	4.2	54	88	3	312	18	16	21	43	1.88
4376021--4376247	107	2.1	108	88	2	332	18	16	21	43	1.88
4376020--4376246	80	2.8	81	87	1	330	18	16	21	43	1.88
4382670--4382707	19	2.0	19	94	0	67	36	28	5	28	1.79
4383253--4383314	30	2.0	31	84	3	81	32	0	46	20	1.51
4384531--4384580	25	2.0	25	88	0	73	58	4	4	34	1.36
4387697--4387726	13	2.3	13	100	0	60	60	6	6	26	1.47
4393855--4393922	23	3.0	23	97	0	127	32	26	22	19	1.97
4394149--4394187	18	2.2	17	86	13	53	46	20	0	33	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182