genome.fa.s21.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  37  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11959742--11959816	18	4.2	17	73	20	64	29	12	6	52	1.64
11963922--11964041	43	2.9	41	73	12	127	33	22	21	22	1.97
11964161--11965290	207	5.5	207	96	0	2003	29	18	23	28	1.98
11971786--11971828	20	2.2	20	91	0	68	25	11	11	51	1.72
11972932--11973101	85	2.0	85	92	0	286	28	7	30	34	1.84
11974324--11974373	20	2.5	20	84	9	66	60	2	4	34	1.27
11974615--11974703	27	3.4	26	75	10	83	55	3	5	35	1.40
11976226--11976287	16	3.9	16	86	0	88	40	1	29	29	1.66
11976226--11976295	32	2.2	32	94	0	122	40	2	27	30	1.71
11976242--11976297	16	3.5	16	87	0	76	42	3	25	28	1.71
11976534--11976573	21	2.0	20	90	5	62	55	2	0	42	1.13
11976597--11976642	22	2.1	21	88	11	67	65	2	0	32	1.05
11976745--11976779	13	2.8	12	91	8	61	60	0	8	31	1.27
11977543--11977579	5	7.4	5	96	0	56	86	0	13	0	0.57
11988944--11988969	5	5.2	5	100	0	52	80	0	19	0	0.71
11993485--11993558	34	2.1	34	82	9	87	36	8	13	41	1.74
11993535--11993611	32	2.4	33	76	6	86	35	7	14	42	1.74
11995887--11995929	13	3.3	13	75	12	52	65	9	9	16	1.47
11995998--11996228	3	75.7	3	66	18	52	59	3	8	28	1.42
11995993--11996131	37	3.9	36	69	20	105	58	0	10	30	1.31
11996035--11996064	16	1.9	15	93	6	51	76	0	0	23	0.78
11996036--11996088	22	2.7	19	80	11	54	71	0	3	24	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11996031--11996090	19	3.2	20	80	15	67	66	0	6	26	1.16
11996243--11996298	3	18.7	3	96	0	103	32	0	33	33	1.58
11996297--11996333	3	12.3	3	88	0	56	64	0	5	29	1.15
11997832--11997870	11	3.6	10	83	16	51	61	2	17	17	1.46
11997832--11997881	23	2.2	22	85	7	64	62	4	18	16	1.48
12000352--12000394	18	2.5	17	85	7	59	18	25	39	16	1.91
12000701--12000786	30	2.9	30	98	0	163	25	48	3	22	1.66
12012149--12012298	25	5.6	27	72	12	96	32	7	5	54	1.51
12012090--12012306	25	8.5	25	66	18	92	33	6	4	55	1.46
12012173--12012254	28	2.8	30	76	9	80	30	6	3	59	1.39
12012459--12012506	16	3.1	15	90	6	69	31	2	2	64	1.16
12012459--12012510	8	6.5	8	82	8	61	30	1	1	65	1.14
12014782--12014822	22	1.9	22	90	5	66	58	0	0	41	0.98
12024087--12024124	18	2.1	19	85	5	51	60	0	7	31	1.25
12024154--12024219	24	2.8	24	73	13	64	56	1	15	27	1.48
12024229--12024260	6	5.5	6	96	3	57	68	0	0	31	0.90
12024488--12024521	3	11.3	3	90	0	50	58	2	2	35	1.28
12024497--12024531	18	1.9	18	88	0	52	51	2	11	34	1.53
12024695--12024810	3	38.7	3	73	11	71	63	1	6	28	1.28
12026991--12027035	21	2.1	21	84	8	56	53	0	2	44	1.13
12027921--12027970	25	2.0	25	100	0	100	20	24	12	44	1.85
12027996--12028038	21	2.2	19	83	8	50	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12028119--12028174	25	2.2	25	100	0	112	58	14	7	19	1.58
12028202--12028228	8	3.4	8	100	0	54	62	0	22	14	1.31
12031285--12031372	43	2.0	43	84	4	115	36	4	6	52	1.49
12033086--12033126	13	3.1	14	82	10	50	48	14	17	19	1.81
12044184--12044229	18	2.6	18	96	0	83	13	26	10	50	1.74
12046745--12046868	62	2.0	62	95	0	221	28	10	22	38	1.87
12048839--12048882	21	2.1	21	95	0	79	18	0	15	65	1.27
12062830--12062899	36	1.9	36	88	0	104	48	10	8	32	1.67
12068175--12068213	20	2.0	20	94	0	69	25	23	15	35	1.94
12068587--12068628	21	2.0	21	95	0	75	28	26	4	40	1.76
12069265--12070600	672	2.0	672	100	0	2672	33	22	12	31	1.92
12078478--12079674	598	2.0	598	100	0	2394	22	28	16	33	1.95
12090423--12090459	15	2.5	16	87	12	53	45	10	24	18	1.81
12094576--12094630	26	2.0	28	86	6	78	63	5	0	30	1.17
12096846--12096892	22	2.1	22	96	0	85	31	19	12	36	1.89
12097780--12097827	24	2.0	24	84	8	62	58	0	2	39	1.10
12100824--12101164	160	2.2	151	87	8	472	35	13	11	39	1.80
12103147--12103193	24	2.0	24	87	8	69	40	6	6	46	1.55
12103288--12103342	26	2.1	25	83	6	65	21	16	21	40	1.91
12103537--12103586	20	2.5	21	83	9	68	46	6	2	46	1.39
12103661--12103693	12	2.8	12	95	0	57	63	0	12	24	1.28
12105076--12105132	30	1.9	30	82	13	73	47	3	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12105306--12105371	13	5.1	13	75	0	69	37	25	6	30	1.80
12111181--12111212	16	2.1	16	88	11	50	59	18	0	21	1.38
12121360--12121399	7	5.7	7	100	0	80	57	0	0	42	0.98
12121364--12121409	21	2.2	21	84	7	58	58	2	2	36	1.22
12121676--12121725	12	3.9	13	71	12	50	60	0	6	34	1.21
12121755--12121819	21	3.1	21	76	8	62	58	0	4	36	1.19
12121900--12121949	19	2.7	19	84	6	68	68	2	4	26	1.18
12123569--12123793	84	2.7	83	88	4	319	28	17	16	37	1.91
12123708--12124064	119	3.0	119	97	0	678	32	17	15	35	1.91
12130420--12130524	30	3.5	30	93	0	183	24	50	2	21	1.62
12131008--12131139	25	5.5	23	68	16	65	34	4	3	57	1.34
12131085--12131225	25	5.5	25	70	15	83	31	6	4	57	1.43
12131379--12131426	16	3.1	15	90	6	69	31	2	2	64	1.16
12131379--12131430	8	6.5	8	82	8	61	30	1	1	65	1.14
12141820--12142269	85	5.5	83	77	12	394	28	15	21	34	1.94
12141998--12142224	72	3.0	76	78	7	246	29	15	22	32	1.95
12142160--12142930	140	5.5	140	95	0	1371	25	16	19	38	1.93
12142483--12142508	13	2.0	13	100	0	52	30	7	0	61	1.24
12142625--12142658	13	2.5	13	90	4	50	20	11	8	58	1.59
12142905--12142952	15	3.3	15	82	5	53	16	12	6	64	1.46
12143816--12143980	30	5.5	30	86	1	199	26	47	3	21	1.67
12143816--12143980	90	1.8	90	84	5	226	26	47	3	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12144533--12144649	25	4.5	27	70	11	82	33	6	4	55	1.46
12144545--12144683	25	5.5	25	72	12	97	33	6	4	56	1.45
12144542--12144634	26	3.4	28	74	14	77	32	5	4	58	1.40
12144664--12144719	19	2.8	20	75	8	60	32	7	5	55	1.50
12144835--12144882	16	3.1	15	90	6	69	31	2	2	64	1.16
12144835--12144886	8	6.5	8	82	8	61	30	1	1	65	1.14
12150740--12150994	128	2.0	128	96	0	474	51	10	12	26	1.71
12151248--12151274	14	1.9	14	100	0	54	62	0	0	37	0.95
12151556--12151605	12	3.9	13	71	12	50	60	0	6	34	1.21
12151631--12151679	19	2.6	17	79	17	53	63	0	2	34	1.06
12151636--12151704	21	3.3	22	75	15	65	57	0	5	36	1.22
12151763--12151812	19	2.7	19	90	6	77	70	2	4	24	1.15
12154564--12154614	24	2.1	24	88	0	75	39	5	5	49	1.51
12154574--12154620	24	2.0	24	91	0	76	42	6	4	46	1.48
12157899--12158076	27	6.6	27	83	3	205	26	15	28	29	1.96
12157900--12158055	82	1.9	81	88	3	233	26	15	28	29	1.96
12157896--12158076	82	2.2	81	83	2	229	27	15	27	29	1.96
12166089--12166266	27	6.6	27	83	3	205	26	15	28	29	1.96
12166090--12166245	82	1.9	81	88	3	233	26	15	28	29	1.96
12166086--12166266	82	2.2	81	83	2	229	27	15	27	29	1.96
12172687--12172733	24	2.0	24	87	8	69	40	6	6	46	1.55
12173097--12173136	19	2.0	20	90	4	64	45	7	0	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12174662--12174715	26	2.1	26	96	0	99	29	7	5	57	1.49
12175463--12175695	128	1.8	128	88	0	358	29	16	17	36	1.92
12176202--12176258	17	3.5	15	84	15	53	38	10	15	35	1.82
12176202--12176280	36	2.1	38	90	9	126	37	10	16	35	1.82
12176202--12176280	19	4.2	19	90	9	126	37	10	16	35	1.82
12182229--12182261	2	17.0	2	87	6	50	48	0	0	51	1.00
12182329--12182368	17	2.4	16	87	4	53	67	0	32	0	0.91
12184890--12184955	19	3.4	18	76	12	69	83	0	10	6	0.81
12184917--12184953	7	5.4	7	84	15	51	86	0	13	0	0.57
12184917--12184952	13	2.7	13	95	4	63	86	0	13	0	0.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182