genome.fa.s21.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  140  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42980928--42980978	25	2.1	24	82	10	59	56	1	5	35	1.35
42982740--42982768	13	2.1	14	93	6	51	51	0	3	44	1.18
42983282--42983345	31	2.0	32	85	8	87	45	0	7	46	1.32
42983826--42983873	15	3.3	15	82	2	62	37	2	12	47	1.53
42984505--42984545	19	2.2	19	87	12	59	46	0	24	29	1.53
42985591--42985679	38	2.4	37	83	5	124	30	14	22	32	1.94
42989156--42989321	53	3.1	53	88	6	221	25	15	28	30	1.96
42996674--42996839	53	3.1	53	88	6	221	25	15	28	30	1.96
42999397--42999476	41	2.0	41	100	0	160	26	10	16	47	1.77
43002950--43002997	19	2.5	19	86	3	60	22	2	4	70	1.15
43003284--43003329	22	2.1	22	100	0	92	41	10	21	26	1.86
43025515--43025591	33	2.3	33	82	4	93	38	15	18	27	1.91
43027292--43027433	52	2.7	54	80	4	157	26	16	27	30	1.96
43027925--43027986	31	2.0	31	100	0	124	29	3	25	41	1.71
43029913--43029970	28	2.1	28	93	0	98	44	6	13	34	1.71
43030198--43030231	17	2.1	16	94	5	59	50	0	0	50	1.00
43031168--43031223	6	9.2	6	84	2	67	19	17	16	46	1.84
43033004--43033028	13	1.9	13	100	0	50	32	16	16	36	1.90
43034616--43034918	51	6.2	49	91	3	470	32	8	29	29	1.88
43034616--43034918	100	3.1	98	90	4	470	32	8	29	29	1.88
43035037--43035115	37	2.1	37	88	4	115	25	18	30	25	1.98
43045380--43045443	28	2.3	28	78	5	67	51	6	1	40	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43052322--43052382	31	2.0	31	86	0	86	39	13	14	32	1.85
43056444--43056511	31	2.2	31	84	10	86	55	0	0	44	0.99
43056896--43056921	12	2.2	12	100	0	52	23	0	0	76	0.78
43058151--43058266	61	1.9	60	84	5	153	26	9	10	53	1.65
43058700--43058775	31	2.5	31	82	4	91	47	10	15	26	1.78
43073534--43073558	8	3.1	8	100	0	50	76	0	0	24	0.80
43076766--43076848	25	3.3	25	83	5	96	24	19	24	32	1.97
43081452--43081486	15	2.4	14	86	9	52	25	14	5	54	1.62
43081454--43081484	15	2.1	15	93	0	53	22	12	6	58	1.58
43081673--43081830	43	3.7	41	78	9	138	31	24	17	26	1.97
43087337--43087391	18	3.0	18	81	2	56	20	5	25	49	1.70
43096386--43096437	26	2.2	22	86	13	68	40	3	0	55	1.18
43099688--43099726	14	2.8	14	84	0	51	69	2	5	23	1.21
43105338--43105546	21	10.0	21	78	2	186	45	15	21	17	1.85
43105338--43105543	84	2.5	84	87	0	295	45	15	21	17	1.86
43105338--43105546	42	5.0	42	83	0	265	45	15	21	17	1.85
43107306--43107604	146	2.0	148	94	1	530	33	13	14	38	1.85
43108785--43108840	29	1.9	29	85	7	78	50	5	19	25	1.69
43109090--43109123	13	2.6	13	100	0	68	44	0	5	50	1.26
43109080--43109127	13	3.8	13	89	5	64	41	0	4	54	1.20
43110716--43110828	33	3.4	33	80	7	113	35	18	22	23	1.96
43110904--43111075	46	3.7	46	89	0	254	43	13	23	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43111190--43111712	174	3.0	174	100	0	1046	46	6	14	32	1.70
43113448--43113519	25	2.9	25	75	6	74	23	26	19	30	1.98
43113881--43113910	14	2.1	14	93	0	51	46	36	0	16	1.47
43116645--43116752	26	4.2	26	93	0	189	36	24	7	32	1.83
43134316--43134376	29	2.1	30	87	9	90	55	3	0	40	1.16
43134835--43134876	18	2.3	18	88	8	59	35	0	2	61	1.09
43136536--43136884	74	4.7	73	70	15	270	59	5	4	30	1.39
43136603--43136833	77	3.0	77	70	13	260	59	6	4	29	1.42
43136531--43136951	151	2.9	146	92	5	667	59	5	4	30	1.39
43136894--43136974	7	10.5	8	68	22	50	61	2	2	33	1.22
43136888--43136947	22	2.8	23	81	18	69	63	5	1	30	1.25
43136942--43136986	24	2.0	23	83	12	58	60	0	4	35	1.17
43139870--43139989	41	2.9	41	78	12	127	17	25	18	38	1.92
43139870--43139990	42	2.9	41	81	9	138	17	26	18	38	1.92
43139908--43139974	21	3.2	21	74	4	64	16	25	19	38	1.92
43139921--43139981	21	3.0	21	75	2	61	19	27	18	34	1.95
43155331--43155363	17	2.0	16	94	5	57	42	0	15	42	1.46
43155360--43155384	6	4.2	6	100	0	50	16	0	48	36	1.46
43156274--43156325	11	4.5	11	76	19	52	34	0	0	65	0.93
43156347--43156388	20	2.1	20	86	0	57	40	7	0	52	1.29
43157015--43157090	4	19.0	4	72	20	61	69	3	25	1	1.13
43157015--43157089	22	3.5	21	75	13	57	70	4	24	1	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43157954--43158040	40	2.2	40	85	2	111	25	14	22	36	1.93
43160236--43160556	48	6.7	48	76	6	229	28	19	27	23	1.98
43160276--43160556	96	2.9	96	80	8	329	28	19	28	23	1.98
43160226--43160556	144	2.3	143	84	4	414	28	19	27	24	1.98
43160276--43160558	48	5.9	48	81	7	297	28	19	28	23	1.98
43167985--43168208	48	4.7	48	81	4	211	26	19	31	22	1.98
43168026--43168208	96	1.9	96	88	0	276	25	19	32	22	1.97
43171085--43171154	7	10.4	7	79	14	76	48	1	0	50	1.09
43171085--43171186	32	3.4	31	75	21	110	47	0	0	50	1.14
43175360--43175393	17	2.0	17	88	0	50	29	0	8	61	1.26
43175792--43175822	12	2.6	12	94	0	53	74	0	25	0	0.82
43176042--43176176	39	3.4	38	76	10	112	24	21	26	27	1.99
43176280--43176319	18	2.2	18	86	8	55	47	0	22	30	1.52
43176802--43176839	20	1.9	20	84	10	51	47	0	10	42	1.38
43179554--43179596	22	2.0	21	90	4	68	65	9	13	11	1.48
43184028--43184062	3	11.7	3	100	0	70	65	0	0	34	0.93
43191342--43191415	29	2.6	29	86	2	96	32	5	1	60	1.27
43191998--43192030	17	1.9	17	88	11	50	39	0	0	60	0.97
43192641--43192682	22	1.9	22	85	9	59	38	0	9	52	1.34
43202276--43202310	17	2.1	17	88	0	52	82	0	17	0	0.66
43204819--43204867	26	2.0	25	84	8	64	53	2	0	44	1.12
43213066--43213290	115	2.0	115	82	0	279	50	3	10	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43214756--43214824	35	2.0	35	100	0	138	34	26	20	18	1.96
43218182--43218233	20	2.6	20	84	6	61	46	19	1	32	1.61
43218678--43218723	17	2.7	18	76	10	51	23	0	6	69	1.11
43222779--43222850	4	18.8	4	76	21	50	70	0	27	1	0.95
43222804--43222833	3	10.3	3	92	7	53	70	0	30	0	0.88
43222788--43222850	20	3.8	16	77	20	58	71	0	26	1	0.95
43222786--43222847	14	4.2	15	78	17	60	72	0	25	1	0.94
43222778--43222847	27	2.6	27	77	18	74	70	0	28	1	0.96
43223532--43223785	131	1.9	131	94	1	447	37	18	18	25	1.93
43224803--43224941	39	3.6	39	86	6	185	51	5	13	30	1.63
43224803--43224951	77	1.9	77	86	4	210	48	5	16	29	1.67
43225443--43225508	24	2.7	24	75	11	62	39	6	4	50	1.48
43232453--43233602	210	5.5	210	90	2	1793	29	18	22	30	1.97
43233817--43233902	45	1.9	45	88	4	129	29	15	30	25	1.96
43235135--43235176	15	2.9	14	82	10	57	35	0	11	52	1.38
43238207--43238352	53	2.7	53	86	4	195	28	15	26	30	1.96
43240775--43240815	16	2.5	17	92	4	66	36	34	4	24	1.77
43241721--43241754	16	2.1	16	94	0	59	41	0	8	50	1.34
43248034--43248060	14	1.9	14	100	0	54	51	3	7	37	1.48
43253353--43253418	18	3.6	18	85	2	87	0	33	0	66	0.92
43253353--43253412	22	3.0	21	86	13	74	0	33	0	66	0.92
43269235--43269314	42	1.9	42	94	0	142	38	10	15	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43273518--43273574	10	5.5	10	75	8	51	59	1	0	38	1.08
43273518--43273583	20	3.4	19	73	10	53	60	1	0	37	1.06
43274195--43274266	28	2.8	25	82	6	81	44	1	0	54	1.08
43274216--43274267	17	3.1	17	78	8	61	46	0	0	53	1.00
43277042--43277096	24	2.3	24	83	0	65	49	10	5	34	1.61
43280219--43280243	12	2.1	12	100	0	50	24	16	16	44	1.86
43280290--43280610	41	7.8	41	89	0	471	35	25	20	18	1.95
43280752--43280786	17	2.0	17	88	5	52	20	0	14	65	1.26
43281500--43281550	21	2.4	21	86	0	84	11	3	31	52	1.56
43281919--43281963	20	2.1	21	88	8	65	44	0	4	51	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182