genome.fa.s21.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  122  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37496366--37496615	50	4.9	50	79	5	198	24	28	20	26	1.99
37516803--37516873	20	3.5	20	74	14	56	76	1	2	19	0.99
37516774--37516869	16	5.8	16	73	18	72	75	4	3	17	1.10
37516797--37516869	6	13.6	5	74	20	51	75	2	2	19	1.05
37520374--37520440	33	2.0	34	85	8	93	28	23	26	20	1.99
37524191--37524278	30	2.9	30	86	0	122	13	23	37	25	1.92
37529106--37529283	27	6.6	27	83	3	205	26	15	28	29	1.96
37529107--37529262	82	1.9	81	88	3	233	26	15	28	29	1.96
37529103--37529283	82	2.2	81	83	2	229	27	15	27	29	1.96
37529188--37529294	27	3.9	27	85	1	70	26	14	28	30	1.95
37537295--37537472	27	6.6	27	83	3	205	26	15	28	29	1.96
37537296--37537451	82	1.9	81	88	3	233	26	15	28	29	1.96
37537292--37537472	82	2.2	81	83	2	229	27	15	27	29	1.96
37541878--37542138	145	1.8	146	84	5	368	42	9	4	42	1.58
37541878--37542183	145	2.1	144	82	8	343	43	10	4	42	1.58
37542667--37542691	3	8.3	3	100	0	50	32	0	32	36	1.58
37543140--37543315	42	4.2	42	88	2	246	35	25	17	21	1.95
37551468--37551501	4	8.5	4	86	0	50	44	0	32	23	1.54
37558639--37558691	23	2.3	23	96	0	97	52	13	3	30	1.57
37560581--37560668	36	2.4	36	88	0	131	27	28	15	28	1.96
37570404--37570462	29	2.0	29	100	0	118	38	13	20	27	1.90
37582852--37582941	46	2.0	44	85	8	119	32	25	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37582946--37583140	51	3.8	52	81	9	224	31	27	15	24	1.96
37583046--37583078	14	2.5	13	90	9	50	39	27	9	24	1.85
37596222--37596307	18	4.6	18	70	12	75	54	1	22	22	1.51
37596198--37596315	56	2.1	55	93	1	200	55	0	22	21	1.49
37602513--37602582	35	2.0	35	94	0	122	35	7	27	30	1.83
37603651--37603720	35	2.0	35	94	0	122	35	7	27	30	1.83
37604390--37604432	23	1.9	23	90	4	70	69	2	11	16	1.28
37606056--37606129	27	2.7	28	78	14	91	62	12	5	20	1.49
37606163--37606212	3	17.3	3	76	15	52	68	2	2	28	1.12
37606155--37606209	26	2.2	25	90	3	83	69	3	1	25	1.15
37606165--37606212	17	2.8	17	87	3	69	68	2	2	27	1.11
37606128--37606209	9	9.1	9	70	10	51	67	3	3	25	1.24
37617109--37617138	16	1.9	15	93	6	51	0	16	0	83	0.65
37620202--37620235	17	1.9	18	88	5	52	50	0	0	50	1.00
37622242--37622282	23	1.9	20	85	14	55	56	7	0	36	1.27
37631686--37631894	92	2.3	91	85	5	260	44	3	4	46	1.42
37631917--37632442	120	4.4	120	96	0	955	43	2	4	48	1.37
37632151--37632185	18	2.0	17	88	5	52	45	0	0	54	0.99
37632271--37632305	18	2.0	17	88	5	52	45	0	0	54	0.99
37632391--37632425	18	2.0	17	88	5	52	45	0	0	54	0.99
37632590--37632680	45	2.0	45	85	2	121	37	28	6	27	1.82
37632661--37632729	16	4.2	16	88	3	111	36	36	1	26	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37632661--37632729	33	2.1	32	91	2	111	36	36	1	26	1.66
37632793--37632863	16	4.4	16	89	0	106	40	7	23	28	1.81
37637679--37637718	21	1.9	21	84	0	53	50	32	2	15	1.57
37644391--37644478	28	3.1	28	85	3	97	28	20	25	26	1.99
37644800--37645218	27	15.5	28	78	10	383	18	19	17	44	1.87
37652501--37652863	27	13.5	27	77	9	248	16	17	19	46	1.85
37652501--37652864	54	6.8	54	80	7	316	16	18	19	45	1.85
37652500--37652864	81	4.5	80	80	5	378	16	18	19	45	1.85
37658869--37658914	24	1.9	24	81	0	56	28	30	21	19	1.98
37666108--37666138	12	2.6	12	94	0	53	41	16	19	22	1.89
37673527--37673594	29	2.3	29	94	0	127	52	19	0	27	1.46
37677955--37678016	6	10.0	6	94	5	106	17	0	0	82	0.67
37686406--37686498	46	2.2	44	81	12	113	33	3	5	58	1.37
37689551--37689579	13	2.2	13	100	0	58	31	0	20	48	1.50
37696232--37696391	49	3.2	49	73	11	182	28	21	17	33	1.96
37696218--37696446	99	2.3	99	98	0	440	25	23	20	30	1.98
37696281--37696445	50	3.3	50	75	11	203	24	23	21	30	1.99
37697940--37697992	26	2.0	26	100	0	106	35	22	3	37	1.72
37703622--37703798	49	3.6	49	80	11	161	22	25	22	28	1.99
37706578--37706608	15	2.1	15	100	0	62	35	25	12	25	1.92
37707232--37707448	103	2.1	104	81	1	267	36	20	10	33	1.86
37709300--37709345	3	15.3	3	100	0	92	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37710823--37710850	11	2.5	11	100	0	56	50	0	0	50	1.00
37710846--37710893	8	5.4	9	90	7	55	16	4	0	79	0.89
37716527--37716926	50	7.8	50	86	3	514	26	21	30	22	1.99
37722963--37723001	12	3.2	12	85	0	51	20	23	5	51	1.67
37723214--37723441	49	4.5	49	78	8	165	24	27	19	28	1.99
37725578--37725651	38	1.9	38	97	0	139	32	22	17	27	1.97
37740223--37740329	50	2.1	50	87	0	160	19	31	21	27	1.97
37742045--37742118	36	2.1	36	92	0	121	8	37	2	51	1.46
37742061--37742121	19	3.3	19	71	17	65	8	37	1	52	1.41
37747555--37747592	16	2.4	17	82	13	53	55	0	0	44	0.99
37747837--37747951	37	3.2	35	72	20	103	66	3	0	29	1.14
37747858--37747882	13	1.9	13	100	0	50	68	8	0	24	1.16
37747923--37747968	19	2.4	19	85	0	65	69	0	0	30	0.89
37748001--37748062	28	2.2	28	82	8	72	53	3	0	43	1.17
37748737--37748791	19	2.8	20	77	2	67	29	1	3	65	1.20
37749221--37749246	2	13.0	2	100	0	52	0	50	0	50	1.00
37753744--37753793	22	2.3	22	100	0	100	28	36	0	36	1.58
37753857--37753920	29	2.2	29	88	2	94	32	0	0	67	0.91
37753871--37753912	20	2.2	18	84	16	50	30	0	0	69	0.89
37754011--37754044	15	2.3	15	90	5	52	26	0	5	67	1.13
37754476--37754549	38	1.9	38	97	0	139	39	22	14	22	1.91
37756235--37757057	29	26.3	29	80	14	851	45	25	0	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37756248--37757057	65	12.8	65	83	9	902	45	26	0	27	1.60
37756588--37756678	30	3.2	26	90	7	94	43	25	2	28	1.66
37761475--37761897	40	10.6	40	91	0	657	23	21	28	26	1.99
37763560--37763738	85	2.1	85	97	0	340	39	8	26	26	1.84
37773484--37773515	15	2.0	17	88	11	50	21	31	0	46	1.52
37773996--37774109	40	2.9	41	81	6	128	40	24	18	16	1.91
37782667--37782717	22	2.3	22	86	0	75	39	25	13	21	1.90
37782908--37782944	18	2.0	19	89	5	58	45	29	0	24	1.53
37784912--37785014	40	2.5	41	79	6	120	25	19	19	35	1.95
37789105--37789138	9	3.8	9	88	0	50	0	26	35	38	1.57
37793874--37793906	15	2.3	15	89	5	50	75	0	15	9	1.03
37795958--37795987	16	1.9	15	93	6	51	73	0	6	20	1.05
37795951--37796001	24	2.1	24	82	13	61	68	0	5	25	1.12
37797590--37797704	25	4.7	24	80	10	117	62	0	1	35	1.06
37797652--37797705	23	2.4	23	84	6	67	61	0	3	35	1.14
37797598--37797732	38	3.6	37	71	22	104	61	0	2	35	1.11
37798436--37798460	6	4.2	6	100	0	50	16	32	0	52	1.44
37798829--37798868	3	13.3	3	100	0	80	32	0	0	67	0.91
37802334--37802387	19	2.8	19	88	0	81	40	9	12	37	1.76
37802607--37802655	23	2.1	23	84	0	62	24	0	14	61	1.33
37807526--37807652	65	2.0	65	88	3	193	39	11	7	41	1.69
37815428--37815471	19	2.4	19	85	14	65	72	4	6	15	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37817557--37817598	22	1.9	22	85	9	59	71	0	19	9	1.13
37817561--37817623	33	1.9	34	83	6	85	66	0	15	17	1.25
37818820--37819079	98	2.7	98	97	1	488	24	24	7	43	1.80
37819151--37819175	3	8.3	3	100	0	50	32	0	0	68	0.90
37819238--37819274	19	2.0	19	89	5	58	27	18	0	54	1.44
37828382--37828496	50	2.3	50	81	3	133	31	20	24	24	1.98
37828380--37828498	25	4.8	25	68	12	82	30	19	25	25	1.98
37831658--37831716	25	2.4	25	77	11	66	32	22	23	22	1.98
37834550--37835125	138	4.2	137	85	2	773	40	8	5	45	1.58
37844671--37844697	14	1.9	14	100	0	54	44	25	0	29	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182