genome.fa.s21.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  28  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9341298--9341351	3	18.3	3	75	17	51	61	0	5	33	1.19
9341566--9341613	3	16.3	3	86	4	62	60	0	6	33	1.22
9341557--9341594	15	2.6	16	91	8	55	60	0	5	34	1.19
9341560--9341674	35	3.3	33	71	24	85	57	1	7	33	1.38
9341958--9342020	17	3.5	17	72	10	54	57	4	6	31	1.45
9342148--9342190	22	2.0	22	86	9	61	51	11	0	37	1.39
9342335--9342370	15	2.4	14	86	13	54	55	2	2	38	1.29
9343067--9343119	21	2.7	21	85	11	76	75	0	7	16	1.02
9343074--9343120	23	2.0	23	91	4	76	74	0	6	19	1.03
9343395--9343421	6	4.5	6	100	0	54	0	14	0	85	0.61
9344860--9345001	41	3.5	41	69	8	110	28	19	23	28	1.98
9344833--9345014	82	2.2	82	80	3	197	31	19	24	25	1.98
9345550--9345602	21	2.5	21	81	0	70	15	0	30	54	1.41
9345590--9345668	14	5.6	14	68	5	52	22	1	30	45	1.60
9345516--9345668	28	5.4	28	66	13	80	21	0	26	50	1.53
9345622--9345687	28	2.3	29	80	12	75	22	0	24	53	1.47
9346164--9346252	40	2.2	40	89	0	133	35	20	21	22	1.96
9349822--9349891	24	2.6	27	71	17	74	11	15	18	54	1.71
9351536--9351629	9	10.3	9	77	10	93	45	20	1	32	1.58
9351536--9351629	26	3.4	27	84	8	111	45	20	1	32	1.58
9356693--9356721	14	2.1	14	93	6	51	34	0	10	55	1.34
9357496--9357717	43	5.2	42	73	12	159	27	15	24	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9359042--9359083	7	5.7	7	91	8	66	71	0	2	26	0.98
9362527--9362882	140	2.5	140	90	0	543	27	21	21	30	1.98
9362792--9362995	109	1.9	109	83	0	264	26	19	20	33	1.96
9362652--9363119	249	1.9	249	84	0	632	26	19	21	31	1.97
9366011--9366197	40	4.7	40	89	0	275	18	21	28	31	1.97
9370088--9370148	30	2.0	30	96	0	113	26	4	24	44	1.74
9376871--9376910	21	1.9	21	90	10	64	15	0	32	52	1.43
9377701--9377758	9	6.4	9	81	0	62	55	6	34	3	1.44
9377701--9377758	6	9.7	6	88	0	62	55	6	34	3	1.44
9377710--9377758	18	2.7	18	90	0	71	55	8	34	2	1.41
9377701--9377758	24	2.4	24	94	0	98	55	6	34	3	1.44
9380187--9380371	35	5.2	35	72	10	99	24	14	16	44	1.84
9380233--9380375	36	4.0	36	77	7	139	25	13	16	43	1.86
9380237--9380396	36	4.4	37	76	9	125	25	15	15	43	1.85
9380237--9380435	72	2.8	72	78	3	195	25	15	16	42	1.87
9383908--9383946	19	2.0	20	85	5	53	23	0	10	66	1.22
9384298--9384371	11	7.2	11	72	14	52	29	1	2	66	1.14
9384297--9384408	49	2.3	48	83	7	136	32	0	1	65	1.09
9384298--9384443	9	15.4	9	71	18	77	31	1	1	65	1.09
9384298--9384445	20	7.2	20	72	16	90	31	1	1	66	1.09
9384297--9384445	28	5.6	27	69	20	100	31	1	1	65	1.09
9386603--9386631	11	2.6	11	100	0	58	31	20	10	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9386559--9386720	52	3.2	52	70	16	176	38	19	9	32	1.84
9387056--9387100	23	2.0	23	86	8	65	48	4	4	42	1.43
9390903--9390933	14	2.2	14	100	0	62	41	0	22	35	1.54
9393860--9393916	27	2.1	27	93	0	96	54	7	24	14	1.64
9396495--9396563	31	2.3	31	82	9	90	43	20	10	26	1.83
9401627--9402008	189	2.0	189	92	2	633	23	27	18	30	1.97
9414929--9414998	3	23.7	3	73	13	56	35	0	5	58	1.22
9415493--9415534	12	3.6	12	81	12	52	73	0	26	0	0.83
9416246--9416313	21	3.3	21	70	15	70	32	7	20	39	1.80
9416207--9416313	40	2.7	40	86	1	144	32	7	20	39	1.81
9419562--9419668	45	2.4	44	82	6	126	24	16	15	42	1.87
9425454--9425707	127	2.0	127	98	0	490	38	4	19	37	1.71
9425808--9425879	3	24.7	3	72	16	53	36	0	5	58	1.22
9425800--9425879	16	5.3	15	74	15	51	37	0	5	57	1.21
9426366--9426408	12	3.6	12	81	9	52	74	0	25	0	0.82
9426370--9426403	17	1.9	18	94	5	61	70	0	29	0	0.87
9427396--9427508	45	2.5	45	88	2	156	23	18	17	40	1.91
9427381--9427500	45	2.4	49	73	18	115	21	19	18	40	1.91
9441855--9441935	36	2.2	36	86	2	108	40	25	9	23	1.85
9445437--9445515	29	2.7	29	82	4	86	24	15	8	51	1.71
9448529--9448627	25	4.0	24	74	7	65	15	24	21	39	1.91
9452247--9452824	293	2.0	294	95	1	1034	37	21	17	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9461362--9461462	52	1.9	52	95	0	184	25	24	20	28	1.99
9467840--9467921	42	2.0	42	100	0	164	24	29	10	35	1.90
9468180--9468248	9	7.7	9	88	0	93	50	20	4	24	1.66
9468180--9468248	36	1.9	36	93	0	120	50	20	4	24	1.66
9468269--9468307	6	6.2	6	85	11	51	17	0	5	76	0.96
9470796--9470882	42	2.1	42	100	0	174	36	17	9	36	1.82
9483427--9483468	22	2.0	21	90	4	66	40	2	0	57	1.12
9484335--9484385	18	2.7	20	76	11	54	29	0	3	66	1.09
9484772--9484827	27	2.1	27	86	0	76	33	1	3	60	1.24
9486390--9486448	31	1.9	31	85	0	82	45	15	10	28	1.78
9488946--9489004	29	2.0	29	100	0	118	45	23	6	23	1.76
9489209--9489259	22	2.4	22	87	9	70	45	0	0	54	0.99
9491968--9492009	22	1.9	22	90	9	68	14	14	30	40	1.85
9497170--9497260	36	2.5	36	76	5	85	18	14	30	36	1.91
9502772--9502843	24	3.0	24	95	0	135	44	8	18	29	1.78
9506155--9506226	20	3.5	20	78	10	81	27	0	22	50	1.50
9508018--9508049	12	2.6	13	90	9	50	50	21	6	21	1.71
9518463--9518498	16	2.2	17	95	5	65	66	0	0	33	0.92
9518538--9518590	8	6.4	8	81	14	54	58	0	1	39	1.09
9518537--9518612	33	2.3	33	82	8	93	60	0	2	36	1.11
9518633--9518696	31	2.0	32	84	3	85	31	14	15	39	1.87
9520669--9520708	21	1.9	21	89	0	62	40	7	2	50	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9523650--9523702	27	2.0	26	85	3	70	66	5	7	20	1.38
9527678--9527719	17	2.5	16	82	17	50	71	7	2	19	1.20
9532880--9533038	49	3.3	49	89	0	221	25	25	6	42	1.80
9538399--9538495	3	32.3	3	79	8	108	62	5	1	30	1.23
9540343--9540516	57	3.1	55	91	4	287	36	17	15	31	1.91
9540454--9540776	168	1.9	170	87	3	479	37	16	16	29	1.91
9540477--9540946	89	5.4	86	75	10	402	35	17	17	29	1.93
9540733--9540971	89	2.7	87	78	5	219	35	18	17	28	1.94
9543293--9543331	9	4.1	9	84	12	51	0	2	7	89	0.56
9543299--9543326	11	2.5	11	100	0	56	0	0	7	92	0.37
9543293--9543331	20	2.0	20	94	0	69	0	2	7	89	0.56
9545354--9545540	93	2.0	93	98	0	365	16	25	12	45	1.82
9547814--9547857	21	2.0	22	82	4	54	63	4	0	31	1.14
9548173--9548246	3	25.3	3	73	10	64	63	5	1	29	1.25
9548812--9548854	21	2.0	21	81	0	50	13	4	2	79	1.00
9554216--9554263	5	9.6	5	95	0	87	43	0	0	56	0.99
9554589--9554622	9	3.7	9	88	7	50	38	0	2	58	1.13
9554704--9554738	4	8.2	4	87	12	52	74	0	25	0	0.82
9554646--9554740	18	5.2	17	74	13	66	68	3	25	3	1.19
9555126--9555177	11	4.5	11	81	11	50	57	0	13	28	1.36
9555131--9555171	12	3.5	11	90	6	55	56	0	17	26	1.41
9555851--9555942	44	2.1	44	85	4	123	20	19	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9555931--9556031	47	2.2	46	82	7	114	21	20	23	33	1.97
9556121--9556223	48	2.1	48	83	0	125	39	7	15	36	1.76
9558250--9558296	24	1.9	25	86	4	69	57	0	8	34	1.29
9558738--9558800	30	2.1	30	96	0	117	15	41	22	20	1.90
9563459--9563502	22	2.0	22	95	0	79	25	36	4	34	1.76
9568053--9568106	21	2.5	22	75	3	56	20	35	29	14	1.93
9583155--9583196	14	3.1	14	86	3	59	33	0	2	64	1.07
9586363--9586427	33	2.0	33	90	0	103	21	10	32	35	1.88
9586410--9586505	16	5.9	16	70	18	72	22	9	33	34	1.87
9586373--9586502	33	3.9	33	74	11	97	23	10	31	34	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182