genome.fa.s21.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  44  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14002927--14002974	21	2.3	21	92	7	80	37	12	10	39	1.77
14002968--14003020	6	8.5	6	91	8	88	66	0	18	15	1.26
14002935--14002980	21	2.2	21	84	7	58	39	13	10	36	1.79
14004260--14004314	21	3.0	17	73	19	56	29	1	9	60	1.38
14004238--14004314	38	2.0	39	82	14	97	28	5	7	58	1.48
14006596--14006677	40	2.0	40	100	0	164	54	9	14	20	1.68
14009869--14009914	17	2.7	18	80	10	51	34	4	0	60	1.16
14010037--14010075	12	3.2	12	89	7	60	64	0	0	35	0.94
14010044--14010072	13	2.2	13	100	0	58	72	0	0	27	0.85
14010723--14010758	18	1.9	19	88	5	56	58	8	0	33	1.28
14011889--14011971	41	2.0	41	88	0	121	21	21	25	31	1.98
14012035--14012063	15	1.9	15	100	0	58	34	0	10	55	1.34
14016883--14016924	13	2.9	14	80	13	50	54	0	0	45	0.99
14016887--14016923	16	2.3	16	86	13	58	59	0	0	40	0.97
14016956--14017012	15	3.5	15	71	17	51	49	1	1	47	1.22
14017469--14017507	14	2.8	14	88	0	51	30	17	10	41	1.83
14023846--14024013	90	1.9	90	88	3	259	40	5	9	44	1.60
14026868--14026941	33	2.3	31	77	15	78	44	0	0	55	0.99
14029646--14029700	29	2.0	27	85	7	74	27	16	7	49	1.72
14034332--14034401	29	2.5	28	73	19	65	74	1	4	20	1.07
14034348--14034399	17	3.1	17	76	10	54	75	1	5	17	1.10
14036253--14036506	88	2.9	88	82	1	310	33	21	14	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14036253--14036535	44	6.4	44	78	4	255	32	21	14	31	1.93
14036246--14036527	89	3.2	88	78	5	300	31	20	14	32	1.93
14042548--14042635	43	2.1	42	89	4	140	29	17	30	21	1.96
14043568--14044084	73	7.1	73	90	2	736	29	17	22	31	1.96
14043568--14044217	146	4.3	145	85	6	757	29	16	20	33	1.95
14044075--14044109	14	2.5	14	85	0	52	22	8	0	68	1.16
14045049--14045146	30	3.3	30	94	0	178	26	50	6	17	1.69
14046614--14046651	19	2.0	19	100	0	76	57	5	5	31	1.43
14055765--14055834	32	2.2	32	84	2	88	41	8	7	42	1.63
14061236--14061566	35	9.5	35	83	4	312	30	15	23	30	1.95
14061243--14061566	69	4.7	70	81	3	318	30	15	23	30	1.95
14061663--14061723	31	2.0	31	90	0	95	26	19	27	26	1.99
14066421--14066498	40	2.0	40	84	0	102	30	33	14	21	1.93
14067158--14067737	290	2.0	290	93	0	998	36	26	11	25	1.90
14070532--14070565	8	4.2	8	84	0	50	82	0	14	2	0.79
14098866--14098895	2	15.0	2	92	0	51	53	0	46	0	1.00
14100240--14100423	3	60.7	3	70	12	72	53	1	10	33	1.45
14100247--14100355	36	2.9	38	80	9	102	55	0	9	34	1.38
14100347--14100384	16	2.4	16	91	4	60	52	0	18	28	1.45
14100487--14100529	16	2.8	15	86	6	59	62	0	6	30	1.21
14100622--14100651	3	10.0	3	100	0	60	66	0	0	33	0.92
14100746--14100771	3	8.7	3	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14101239--14101314	27	2.7	29	85	10	111	51	18	5	25	1.67
14101769--14102034	44	6.1	44	77	10	210	25	25	16	31	1.97
14102152--14103077	205	4.5	205	94	0	1525	29	21	18	31	1.96
14112303--14112386	34	2.4	33	77	13	89	52	7	5	34	1.53
14112370--14112430	24	2.5	23	82	12	70	54	3	13	29	1.55
14114040--14114088	15	3.2	16	81	16	52	12	6	44	36	1.67
14114189--14114236	25	1.9	25	91	0	78	29	8	29	33	1.86
14114626--14114655	14	2.1	14	100	0	60	6	23	33	36	1.81
14114652--14114929	74	3.8	73	83	4	346	31	23	17	28	1.97
14114652--14114909	72	3.6	70	83	6	302	30	24	17	27	1.97
14114854--14115110	89	2.9	89	87	5	342	35	20	18	25	1.95
14115008--14115037	14	2.1	14	93	0	51	70	6	10	13	1.34
14114935--14115349	164	2.5	162	83	5	516	32	21	18	27	1.97
14115198--14115399	74	2.7	74	81	6	241	28	25	17	28	1.97
14124855--14124911	29	2.0	28	86	6	80	61	1	5	31	1.28
14125746--14126376	177	3.6	177	88	1	890	28	23	18	30	1.97
14126626--14126815	64	3.0	64	88	0	299	37	14	17	30	1.90
14127938--14127978	17	2.4	17	88	8	57	17	0	4	78	0.93
14127937--14127980	16	2.6	16	89	7	61	20	0	4	75	0.98
14131042--14131133	46	2.0	46	86	0	130	27	22	22	27	1.99
14131088--14131146	31	1.9	31	100	0	118	25	25	20	28	1.99
14131126--14131302	50	3.5	50	92	0	282	25	23	16	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14136830--14136890	29	2.1	28	87	3	86	55	1	4	37	1.31
14138342--14138380	20	2.0	21	90	10	64	12	2	12	71	1.24
14139191--14139254	29	2.2	29	83	8	78	48	3	1	46	1.27
14142113--14142149	6	6.3	6	82	17	51	51	0	0	48	1.00
14142118--14142149	16	2.1	15	94	5	55	50	0	0	50	1.00
14147066--14147104	19	2.0	20	90	5	62	28	23	5	43	1.75
14147309--14147498	64	3.0	64	88	0	299	37	14	17	30	1.90
14148621--14148661	17	2.4	17	88	8	57	17	0	4	78	0.93
14148620--14148663	16	2.6	16	89	7	61	20	0	4	75	0.98
14151722--14151813	46	2.0	46	86	0	130	27	22	22	27	1.99
14151768--14151826	31	1.9	31	100	0	118	25	25	20	28	1.99
14151806--14152082	50	5.5	50	94	0	464	25	22	16	35	1.94
14157611--14157671	29	2.1	28	87	3	86	55	1	4	37	1.31
14159158--14159196	20	2.0	21	90	10	64	12	2	12	71	1.24
14160007--14160070	29	2.2	29	83	8	78	48	3	1	46	1.27
14162930--14162966	6	6.3	6	82	17	51	51	0	0	48	1.00
14162935--14162966	16	2.1	15	94	5	55	50	0	0	50	1.00
14170010--14170048	19	2.0	20	90	5	62	28	23	5	43	1.75
14179536--14179653	44	2.7	43	81	11	141	32	21	16	29	1.95
14179750--14179888	44	3.2	44	78	6	122	32	19	22	25	1.97
14183086--14183139	26	2.1	26	89	6	83	31	11	3	53	1.53
14184570--14184600	16	2.0	16	93	6	55	51	12	3	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14187502--14187535	4	8.5	4	86	0	50	20	0	5	73	1.04
14187606--14187646	3	13.7	3	84	0	55	26	4	2	65	1.25
14190417--14190488	35	2.1	35	89	0	108	31	9	15	43	1.79
14190829--14190853	13	1.9	13	100	0	50	72	8	12	8	1.29
14192938--14192988	3	17.0	3	100	0	102	33	0	0	66	0.92
14200284--14200317	17	2.1	17	88	5	52	52	2	0	44	1.16
14203024--14203092	34	2.0	34	100	0	138	20	26	11	42	1.86
14205801--14205825	13	1.9	13	100	0	50	24	36	24	16	1.94
14206163--14206228	32	2.1	32	100	0	132	33	9	12	45	1.73
14206875--14206940	32	2.1	32	100	0	132	33	9	12	45	1.73
14206071--14207495	712	2.0	712	100	0	2850	33	14	17	35	1.90
14208584--14208805	62	3.6	62	80	0	255	27	25	24	22	2.00
14208583--14208849	124	2.1	125	82	2	322	27	25	24	22	2.00
14213122--14213159	17	2.2	17	90	9	60	44	18	2	34	1.64
14213655--14213697	7	6.4	7	89	5	54	88	6	4	0	0.63
14213654--14213690	18	2.0	18	89	5	56	86	10	2	0	0.67
14213655--14213701	12	3.6	13	82	8	51	87	6	6	0	0.68
14213931--14213993	26	2.5	26	89	5	94	30	3	23	42	1.70
14214470--14214595	3	42.0	3	100	0	252	33	0	0	66	0.92
14214791--14214833	16	2.8	15	86	6	59	30	6	0	62	1.21
14214937--14214968	16	2.0	16	93	0	55	21	21	6	50	1.71
14215173--14215233	22	2.8	22	80	2	61	18	6	6	68	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14214968--14215188	3	74.3	3	64	15	57	31	9	2	56	1.45
14222161--14222191	15	2.1	15	100	0	62	54	0	38	6	1.26
14225913--14225989	31	2.5	30	83	6	84	55	5	3	35	1.40
14227387--14227420	15	2.5	13	82	17	50	11	8	8	70	1.34
14227218--14227409	86	2.2	87	77	11	214	24	18	16	40	1.91
14227392--14227420	15	1.9	15	100	0	58	13	6	6	72	1.26
14227499--14227532	15	2.5	13	82	17	50	11	8	8	70	1.34
14227325--14227579	112	2.3	111	99	0	501	30	14	17	36	1.90
14227504--14227532	15	1.9	15	100	0	58	13	6	6	72	1.26
14227546--14227795	53	4.7	54	89	6	377	30	15	18	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182