genome.fa.s21.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  97  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29318417--29318482	26	2.5	26	92	0	105	21	24	28	25	1.99
29319642--29319830	96	2.0	96	100	0	378	22	18	28	30	1.97
29321778--29321847	28	2.5	28	90	0	104	40	18	14	27	1.89
29321778--29321855	28	2.8	28	88	0	84	38	17	16	26	1.92
29323271--29323300	16	1.9	15	93	6	51	53	16	0	30	1.44
29324754--29324807	29	2.0	26	85	10	72	7	16	7	68	1.36
29325685--29325821	49	2.8	49	90	0	211	32	26	13	27	1.94
29326993--29327091	23	4.3	23	82	0	135	30	25	20	24	1.99
29330888--29330921	18	1.9	18	94	5	61	5	47	20	26	1.73
29335087--29335838	376	2.0	376	100	0	1504	34	17	25	22	1.96
29337301--29337351	27	1.9	26	88	4	75	78	7	7	5	1.09
29337361--29337409	12	3.8	12	79	12	53	77	0	16	6	0.96
29339498--29340071	88	6.6	87	87	4	735	27	25	24	22	2.00
29339498--29340071	175	3.3	174	86	4	744	27	25	24	22	2.00
29340205--29340415	44	4.6	45	68	17	137	32	18	20	27	1.96
29340191--29340371	98	1.8	97	82	6	231	32	19	20	27	1.97
29340191--29340457	142	1.9	142	97	0	507	33	19	20	26	1.96
29340464--29340750	50	5.7	50	84	0	340	33	25	20	21	1.97
29340445--29340752	100	3.1	100	82	0	384	33	25	19	21	1.97
29342150--29342194	23	2.0	23	86	0	63	37	8	4	48	1.55
29346484--29346563	36	2.2	36	80	4	90	72	2	17	7	1.19
29355656--29355780	54	2.3	54	97	0	232	8	28	32	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29367499--29367721	27	8.3	27	84	2	259	42	21	16	19	1.89
29367508--29367749	81	3.0	78	77	10	236	41	21	16	20	1.90
29372868--29372939	35	2.1	35	97	0	135	31	18	23	26	1.97
29384340--29384447	50	2.1	53	84	8	143	22	17	28	31	1.97
29388157--29388232	11	6.8	11	70	24	52	55	1	1	42	1.16
29393966--29393992	13	2.1	13	100	0	54	40	14	14	29	1.86
29403274--29405761	511	4.9	511	95	0	4379	30	12	22	34	1.91
29406398--29409493	513	6.0	513	95	1	5378	29	12	22	34	1.91
29413740--29413789	14	3.6	14	81	7	50	38	36	2	24	1.67
29414304--29414366	26	2.4	27	97	2	119	41	9	0	49	1.35
29414359--29414396	19	2.0	19	85	10	51	81	7	2	7	0.96
29414789--29414854	19	3.5	19	79	4	89	37	10	1	50	1.47
29414944--29415100	82	1.9	82	97	0	296	45	10	5	38	1.62
29415169--29415264	19	5.2	19	81	5	124	48	0	13	37	1.43
29415169--29415264	37	2.6	37	98	0	183	48	0	13	37	1.43
29415903--29415964	28	2.3	28	91	5	101	56	0	3	40	1.15
29418437--29418502	28	2.4	28	89	5	107	16	36	16	30	1.91
29426005--29426093	39	2.2	40	77	16	96	4	17	4	73	1.18
29428111--29428230	41	2.9	41	83	4	145	30	23	17	29	1.97
29433683--29433774	15	5.7	15	68	18	51	4	20	2	72	1.12
29435284--29435633	175	2.0	175	99	0	691	33	20	22	23	1.97
29436515--29436589	24	3.2	24	72	12	68	25	14	16	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29438625--29438820	87	2.3	88	86	5	274	39	21	9	30	1.84
29438823--29438876	7	7.9	7	75	19	51	57	0	0	42	0.98
29438855--29438910	27	2.0	28	86	3	78	57	1	3	37	1.27
29439179--29439230	20	2.7	19	76	5	68	34	1	0	63	1.06
29439141--29439231	30	3.0	30	72	12	78	31	3	2	62	1.23
29439179--29439282	39	2.6	38	82	8	102	33	3	2	59	1.30
29439217--29439291	19	3.8	20	76	11	73	33	4	4	58	1.35
29439369--29439560	86	2.3	84	80	7	235	28	8	21	41	1.82
29439391--29439563	86	2.0	88	86	2	242	31	8	21	38	1.84
29443207--29443264	21	2.9	21	79	5	66	56	3	1	37	1.26
29443613--29443656	21	2.0	22	82	8	54	36	2	0	61	1.09
29443582--29443668	30	2.9	30	76	8	86	39	3	0	57	1.16
29447695--29447779	26	3.3	26	83	9	95	43	14	15	27	1.85
29450677--29450719	14	2.9	15	83	13	54	18	16	16	48	1.81
29454514--29454555	18	2.4	18	80	11	52	30	2	0	66	1.04
29454555--29454623	29	2.3	30	75	22	74	27	5	2	63	1.31
29456258--29456339	26	3.2	26	63	27	66	24	14	28	32	1.94
29456341--29456434	45	2.1	45	90	2	154	26	19	23	30	1.98
29457953--29458027	30	2.6	28	82	15	100	65	4	0	30	1.11
29457994--29458033	21	1.9	21	85	10	55	67	0	0	32	0.91
29468466--29468520	12	4.6	12	79	18	53	40	1	1	56	1.21
29468483--29468576	17	5.4	17	65	28	54	40	2	2	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29479073--29479110	17	2.2	17	90	0	58	44	2	2	50	1.30
29488247--29488366	42	2.8	43	83	5	154	23	18	28	30	1.98
29491876--29492008	31	4.1	33	78	8	130	38	3	1	57	1.23
29491875--29491987	31	3.6	31	84	4	145	40	2	1	54	1.24
29493294--29493380	39	2.2	38	84	11	106	39	2	6	51	1.41
29502833--29502874	20	2.2	20	87	12	61	57	4	21	16	1.58
29503333--29503362	16	1.9	16	93	6	53	30	0	20	50	1.49
29509482--29509641	49	3.3	49	75	6	146	47	12	10	29	1.75
29509630--29509709	32	2.5	31	86	6	99	52	12	10	25	1.70
29513758--29514320	217	2.6	217	91	0	892	26	22	21	29	1.99
29514152--29514314	84	1.9	85	82	9	208	26	22	21	28	1.99
29513811--29514308	44	11.4	43	72	13	299	26	22	21	29	1.99
29527621--29527694	31	2.3	31	78	17	80	36	14	6	41	1.73
29527721--29527763	21	2.0	21	82	8	52	32	13	6	46	1.71
29529644--29529751	55	2.0	55	83	7	139	39	13	7	38	1.73
29536297--29536345	21	2.3	21	83	13	57	0	34	0	65	0.93
29543537--29543624	31	3.0	30	82	9	83	54	2	2	40	1.25
29544336--29544429	33	2.8	33	84	6	118	35	26	8	29	1.86
29544731--29544756	2	13.0	2	100	0	52	50	50	0	0	1.00
29545369--29545547	71	2.5	71	81	4	198	31	22	17	27	1.97
29547956--29547996	21	1.9	22	85	14	59	73	0	0	26	0.84
29556945--29557413	42	11.1	42	77	8	468	34	26	17	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29556945--29557413	84	5.5	83	87	5	559	34	26	17	21	1.95
29556945--29557413	128	3.7	126	87	5	590	34	26	17	21	1.95
29557418--29557498	26	3.2	26	64	28	64	34	29	13	22	1.92
29561295--29561380	10	9.0	10	66	23	51	52	1	0	46	1.08
29561277--29561382	34	3.2	33	81	10	144	53	0	0	44	1.13
29561266--29561460	66	3.1	64	81	13	203	53	0	0	45	1.08
29561298--29561400	32	3.2	31	77	13	109	55	0	0	43	1.06
29561424--29561543	26	4.2	28	71	17	70	41	0	1	55	1.15
29561450--29561574	31	4.2	29	68	17	80	39	0	2	57	1.17
29561408--29561583	87	2.0	86	96	1	325	38	0	1	59	1.12
29561763--29561830	16	4.3	15	75	17	57	30	22	1	45	1.61
29561763--29561830	32	2.1	32	83	0	82	30	22	1	45	1.61
29562293--29562344	15	3.2	15	73	19	50	46	0	0	53	1.00
29562306--29562342	19	1.9	19	88	0	56	51	0	0	48	1.00
29562377--29562401	13	1.9	13	100	0	50	48	0	0	52	1.00
29581818--29581860	18	2.4	18	80	0	50	60	2	0	37	1.10
29587761--29587789	8	3.6	8	100	0	58	44	0	27	27	1.54
29588389--29588508	33	3.6	33	92	2	197	24	19	26	30	1.98
29599035--29599104	35	2.0	35	100	0	140	31	11	17	40	1.85
29600054--29600113	29	2.1	29	93	0	102	43	10	8	38	1.68
29600055--29600108	16	3.6	16	65	14	51	42	9	9	38	1.69
29600149--29600194	21	2.2	21	96	0	83	28	4	15	52	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29610252--29610482	50	4.6	50	83	1	259	26	22	29	20	1.98
29618770--29618948	24	7.3	24	75	3	151	27	20	21	30	1.98
29618794--29618947	24	6.3	24	79	3	157	27	19	22	30	1.98
29618772--29618948	49	3.6	49	89	2	248	27	20	21	30	1.98
29621560--29621603	5	8.8	5	94	0	70	20	54	0	25	1.45
29624806--29624868	30	2.1	29	82	2	72	23	14	15	46	1.83
29628413--29628437	10	2.5	10	100	0	50	48	0	8	44	1.32
29628420--29628563	56	2.5	57	75	12	152	48	7	9	34	1.63
29628533--29628587	26	2.1	26	100	0	110	60	7	7	25	1.49
29628589--29629129	28	18.4	28	81	12	593	24	0	24	49	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182