genome.fa.s21.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  108  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32659414--32659439	11	2.4	11	100	0	52	26	0	0	73	0.84
32660276--32660320	21	2.1	21	95	0	81	15	28	4	51	1.63
32663414--32663464	20	2.5	20	90	6	77	27	13	17	41	1.87
32664465--32664538	20	3.7	20	77	10	78	31	14	5	48	1.67
32666107--32666148	20	2.2	19	86	4	57	64	2	9	23	1.35
32668738--32668859	54	2.2	55	78	4	131	24	27	26	22	2.00
32669555--32669599	16	2.8	16	82	0	54	37	17	20	24	1.93
32670142--32670196	21	2.6	22	77	11	62	29	12	12	45	1.79
32678797--32678831	18	1.9	18	88	11	54	77	2	17	2	1.02
32697902--32697991	35	2.6	34	74	19	80	27	7	18	45	1.77
32710846--32710894	17	2.9	17	78	3	55	75	0	10	14	1.04
32711324--32711366	22	2.0	20	82	8	50	34	0	23	41	1.55
32713033--32713065	16	2.1	16	100	0	66	36	6	36	21	1.78
32713045--32713141	44	2.2	44	87	9	135	31	5	28	34	1.79
32713403--32713437	18	2.0	17	88	5	52	54	0	0	45	0.99
32713436--32713478	16	2.8	16	92	3	70	41	16	0	41	1.48
32721234--32721373	26	5.3	26	85	2	165	38	21	16	23	1.93
32721235--32721375	52	2.7	52	87	3	185	38	22	15	23	1.92
32721530--32721589	27	2.2	27	82	11	70	18	20	21	40	1.92
32728734--32728844	26	4.3	26	90	0	177	36	22	16	24	1.94
32729238--32729305	33	2.0	36	88	8	106	26	20	25	27	1.99
32729634--32729701	9	7.6	9	93	0	82	47	23	5	23	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32729635--32729701	27	2.5	27	85	0	98	46	23	5	23	1.74
32730427--32730476	24	2.1	24	92	0	82	32	16	12	40	1.84
32730699--32730838	75	1.9	74	83	7	185	22	18	23	35	1.95
32730891--32730951	27	2.2	27	82	2	68	24	22	22	29	1.99
32732287--32732352	32	2.0	33	88	2	98	33	21	4	40	1.73
32736148--32736182	18	1.9	18	88	0	52	8	34	5	51	1.56
32743514--32743679	45	3.7	45	78	7	158	26	15	22	35	1.94
32743516--32743679	90	1.8	90	83	0	220	25	15	23	35	1.94
32749444--32749705	39	6.7	40	88	7	337	24	27	22	25	2.00
32757804--32757981	27	6.6	27	83	3	205	26	15	28	29	1.96
32757805--32757960	82	1.9	81	88	3	233	26	15	28	29	1.96
32757801--32757981	82	2.2	81	83	2	229	27	15	27	29	1.96
32761003--32761186	40	4.6	41	84	11	199	24	27	22	26	2.00
32761003--32761186	79	2.3	82	82	13	217	24	27	22	26	2.00
32768556--32768771	108	2.0	108	100	0	432	22	19	14	43	1.87
32770440--32770533	33	2.9	31	78	7	98	51	3	1	44	1.24
32770477--32770545	9	7.0	9	78	18	57	57	1	0	40	1.07
32773792--32773880	27	3.3	27	84	6	117	19	17	21	41	1.90
32773817--32773952	68	2.0	68	92	0	227	17	18	20	43	1.88
32773885--32774007	27	4.6	27	89	0	183	18	17	20	43	1.88
32773794--32773967	95	1.8	95	87	0	258	17	17	21	42	1.89
32775477--32775837	27	13.4	27	84	3	386	19	17	20	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32777206--32777465	27	9.7	26	77	5	216	20	16	19	43	1.88
32777213--32777465	54	4.7	53	81	3	274	20	16	20	42	1.89
32777206--32777465	81	3.2	80	81	2	299	20	16	19	43	1.88
32785374--32786243	435	2.0	435	99	0	1704	32	30	10	26	1.90
32786845--32786878	17	1.9	18	88	5	52	55	8	2	32	1.45
32786838--32786884	18	2.5	19	76	13	53	59	6	4	29	1.41
32799840--32800026	41	4.6	41	88	0	257	25	21	22	29	1.99
32803408--32803508	21	4.8	20	75	11	78	46	0	19	32	1.57
32803415--32803481	7	9.6	7	74	18	59	50	1	14	32	1.52
32803409--32803509	14	7.1	14	68	17	57	45	0	19	33	1.57
32803427--32803508	42	1.9	43	82	7	105	48	0	18	32	1.48
32809727--32809776	2	25.0	2	87	0	73	52	0	46	2	1.12
32828471--32828804	146	2.3	145	85	7	437	43	4	10	41	1.59
32832026--32832067	21	2.0	21	90	0	66	35	16	2	45	1.61
32834385--32834427	19	2.4	17	78	21	52	34	0	18	46	1.50
32842511--32842553	12	3.4	12	81	9	50	79	16	4	0	0.90
32842964--32843493	42	12.6	42	88	0	684	20	16	25	38	1.92
32844276--32844324	18	2.6	19	70	3	55	32	0	14	53	1.41
32844313--32844581	147	1.8	147	85	1	378	40	4	10	44	1.59
32844301--32844615	147	2.1	149	80	8	372	39	4	11	45	1.59
32845184--32845219	10	3.5	10	85	7	54	19	5	0	75	1.00
32845962--32845993	3	10.7	3	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32846753--32846796	20	2.2	20	83	0	52	59	4	2	34	1.30
32846765--32846824	19	3.1	19	83	9	68	53	3	1	41	1.27
32851152--32851318	83	2.0	83	98	0	325	45	17	11	25	1.82
32865778--32865824	24	2.0	24	83	8	60	31	25	10	31	1.90
32884434--32884475	21	2.0	21	95	0	75	14	26	19	40	1.89
32884455--32884642	39	4.7	40	81	7	222	13	18	27	40	1.88
32884454--32884632	40	4.5	40	83	3	229	13	18	26	40	1.89
32884454--32884632	79	2.3	79	92	0	295	13	18	26	40	1.89
32885543--32885576	17	2.1	17	94	5	61	20	11	38	29	1.88
32891171--32891348	27	6.6	27	84	3	205	29	28	15	26	1.96
32891192--32891347	82	1.9	81	88	3	233	29	28	15	26	1.96
32901286--32901329	15	3.2	15	69	24	51	18	2	36	43	1.63
32901869--32902005	44	3.1	42	80	12	143	32	21	17	28	1.96
32901892--32902030	44	3.1	44	88	5	190	28	22	17	30	1.97
32902257--32902579	44	7.4	44	79	7	318	26	23	20	30	1.98
32902233--32902589	88	4.1	88	79	7	413	26	21	20	30	1.98
32902233--32902591	132	2.8	129	87	3	497	26	22	20	30	1.98
32913647--32913680	6	5.7	6	92	0	59	82	0	2	14	0.79
32913642--32913681	12	3.3	12	89	0	62	80	0	7	12	0.91
32922491--32922521	14	2.2	14	100	0	62	80	0	12	6	0.89
32923890--32923927	7	5.3	7	96	3	67	42	13	0	44	1.43
32924190--32924247	23	2.5	22	81	18	64	20	12	25	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32925873--32926168	50	5.8	52	80	7	279	28	22	27	21	1.99
32933368--32933612	50	4.8	50	80	8	219	27	21	28	22	1.99
32934304--32934535	115	2.0	115	89	0	356	27	18	21	33	1.96
32934640--32934861	74	3.0	72	68	18	195	24	13	20	40	1.89
32934565--32934979	147	2.8	147	91	0	695	23	15	20	40	1.91
32934564--32934938	73	5.1	74	67	14	263	23	15	20	40	1.90
32934607--32934979	73	5.1	72	67	15	253	23	15	20	39	1.91
32935023--32935363	173	2.0	169	88	4	506	22	37	10	29	1.87
32937010--32937452	9	50.8	9	71	16	240	48	18	2	30	1.62
32937080--32937198	24	4.7	25	73	19	95	50	14	0	34	1.49
32937007--32937463	16	27.9	16	68	17	146	48	17	2	31	1.62
32937117--32937191	12	6.3	12	81	9	91	50	13	1	34	1.50
32937240--32937452	25	8.4	26	81	5	203	46	20	2	30	1.65
32937268--32937387	41	2.9	40	88	4	143	45	18	3	33	1.66
32937295--32937452	41	3.8	40	84	6	156	45	20	3	31	1.66
32943210--32943440	42	5.5	42	83	2	230	28	22	18	30	1.98
32943209--32943464	85	3.0	85	80	6	252	26	22	18	32	1.97
32943360--32943460	42	2.4	42	93	1	166	22	20	20	35	1.96
32949845--32949885	19	2.1	20	90	4	66	19	29	36	14	1.92
32952420--32952481	21	2.9	21	73	4	52	30	4	3	61	1.33
32956246--32956277	16	2.0	16	100	0	64	37	6	25	31	1.81
32962240--32962271	14	2.3	14	100	0	64	18	31	0	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32965455--32965524	35	2.0	36	82	2	88	38	21	11	28	1.88
32985919--32986103	40	4.6	39	80	9	196	24	21	28	25	1.99
32985956--32986136	79	2.3	78	77	12	190	27	19	27	25	1.99
32991888--32991933	14	3.4	14	85	8	60	45	0	2	52	1.13
32991879--32991936	28	2.1	27	84	15	75	44	0	1	53	1.10
32991879--32991934	14	4.2	13	78	19	53	44	0	1	53	1.11
32991950--32992017	31	2.3	29	82	5	73	45	4	5	44	1.48
32993055--32993083	11	2.6	11	100	0	58	0	10	0	89	0.48
32993791--32993837	24	2.0	22	92	8	76	59	0	0	40	0.97
32997083--32997278	99	2.0	99	93	0	338	40	11	23	23	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182