genome.fa.s21.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  34  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11022758--11022800	8	5.5	8	89	10	63	0	9	0	90	0.45
11022755--11022791	6	6.3	6	87	6	58	0	10	0	89	0.49
11026946--11027082	6	22.8	6	99	0	247	52	13	0	33	1.41
11027256--11027299	23	2.0	22	90	4	70	56	2	6	34	1.38
11027986--11028043	22	2.6	22	81	7	64	41	17	5	36	1.72
11028022--11028076	21	2.7	21	94	5	96	36	14	10	38	1.81
11029122--11029156	16	2.2	16	90	10	54	42	2	0	54	1.15
11033960--11034085	42	2.9	43	82	8	141	26	17	25	30	1.97
11033936--11034094	43	3.7	42	77	10	162	25	18	25	30	1.98
11037710--11037756	19	2.5	19	83	16	62	40	0	31	27	1.57
11048039--11048083	19	2.4	19	85	7	56	26	24	8	40	1.84
11055529--11055618	45	2.0	45	93	0	153	25	11	10	53	1.67
11065047--11065101	25	2.2	25	90	0	92	21	21	16	40	1.91
11074500--11074545	14	3.2	14	87	3	56	73	0	2	23	0.94
11081666--11081694	3	9.7	3	100	0	58	34	34	0	31	1.58
11101951--11102587	130	4.9	130	76	6	513	38	12	17	31	1.88
11101950--11102491	260	2.1	260	80	6	589	39	13	16	30	1.87
11106547--11106669	51	2.4	52	89	5	178	34	16	23	25	1.95
11114514--11114616	52	2.0	52	98	0	197	37	13	22	26	1.91
11122722--11122765	22	2.1	20	87	8	61	61	0	22	15	1.34
11126339--11126386	12	3.8	12	91	8	69	12	10	2	75	1.14
11130949--11131000	23	2.3	22	75	21	54	9	23	1	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11132789--11132827	11	3.6	11	89	6	62	71	10	5	12	1.28
11132866--11132920	14	3.9	14	90	4	92	61	1	12	23	1.40
11133625--11133737	56	2.0	56	100	0	226	20	21	26	31	1.98
11133977--11134276	150	2.0	150	98	0	573	36	20	23	20	1.96
11138459--11138532	35	2.0	35	84	10	94	8	16	5	70	1.30
11138525--11138550	13	2.0	13	100	0	52	15	0	7	76	0.99
11139588--11139677	41	2.2	41	91	2	144	20	17	20	42	1.90
11156411--11156450	19	2.0	20	85	9	55	22	30	12	35	1.91
11170039--11170222	96	1.9	96	82	0	233	33	26	20	20	1.97
11177730--11177783	23	2.3	23	81	6	65	33	11	18	37	1.86
11185241--11185398	79	2.0	80	97	1	300	22	22	12	42	1.87
11188954--11189053	50	2.0	51	96	2	184	30	23	10	37	1.87
11191004--11191265	129	2.0	130	94	2	456	36	17	14	32	1.89
11196544--11196597	24	2.3	23	81	12	56	29	12	11	46	1.77
11199704--11199762	30	2.0	30	86	0	82	40	6	25	27	1.80
11200104--11200281	56	3.5	50	76	7	135	27	19	27	25	1.99
11200152--11200273	48	2.5	49	77	4	111	28	20	27	22	1.99
11200545--11200583	20	2.0	20	90	10	62	56	5	23	15	1.59
11200554--11200592	20	2.0	20	89	0	60	58	2	25	12	1.47
11202336--11202599	87	3.0	87	83	0	339	24	26	10	38	1.88
11202336--11202599	29	9.1	29	81	0	267	24	26	10	38	1.88
11205861--11205903	17	2.4	17	80	7	50	11	18	46	23	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11206255--11206539	27	10.6	27	78	3	223	38	19	19	22	1.93
11206280--11206535	54	4.7	54	81	3	273	38	19	20	21	1.93
11206255--11206542	81	3.6	81	81	0	326	38	20	19	21	1.93
11206392--11206559	54	3.1	54	84	2	160	39	21	18	20	1.92
11206569--11206674	24	4.4	24	84	7	126	20	8	24	46	1.78
11206738--11206802	27	2.4	27	80	14	73	20	23	24	32	1.98
11206790--11206843	26	2.1	26	89	0	81	20	20	22	37	1.95
11206800--11206855	26	2.2	26	83	0	67	16	21	28	33	1.95
11207123--11207219	29	3.1	34	62	32	90	30	10	13	45	1.77
11207173--11207267	25	3.5	25	66	25	66	31	7	13	47	1.71
11207124--11207272	58	2.6	58	98	0	289	32	8	13	45	1.74
11208559--11208623	22	3.0	21	81	4	67	18	20	16	44	1.87
11209070--11209123	20	2.7	20	82	0	63	24	20	18	37	1.94
11209070--11209143	30	2.5	30	86	8	98	21	20	18	39	1.93
11209070--11209134	20	3.2	20	71	16	53	23	21	16	38	1.93
11214850--11215030	40	4.5	40	80	4	186	16	29	17	36	1.92
11214850--11215052	80	2.5	80	82	3	237	17	28	17	36	1.93
11214850--11215031	20	9.1	20	66	13	70	16	29	18	36	1.92
11216121--11216156	13	2.8	13	95	0	63	72	2	2	22	1.11
11216360--11216395	13	2.8	13	95	0	63	72	2	2	22	1.11
11215965--11216408	239	1.9	239	99	0	879	36	17	15	30	1.91
11216432--11216469	15	2.5	15	95	0	67	60	5	13	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11217834--11217935	51	2.0	51	96	0	186	30	19	13	36	1.91
11218466--11218527	10	5.9	10	74	10	52	33	30	4	30	1.79
11218486--11218526	21	2.0	21	95	0	73	31	29	4	34	1.79
11220946--11221091	40	3.7	40	84	5	179	26	21	26	25	2.00
11224638--11225007	49	7.3	49	83	13	437	33	8	27	30	1.86
11224872--11224991	56	2.1	56	92	6	197	33	7	28	30	1.85
11224727--11225058	154	2.2	148	84	8	421	33	8	28	29	1.87
11224642--11225058	203	2.1	201	92	1	694	33	9	28	29	1.88
11225177--11225254	37	2.1	37	88	4	113	25	17	30	25	1.97
11227886--11228095	53	4.0	53	81	0	240	34	15	23	27	1.94
11228260--11228471	61	3.5	59	79	8	196	35	13	23	27	1.92
11228367--11228475	29	3.7	29	70	16	89	35	16	22	25	1.94
11240302--11240330	9	3.3	9	95	4	51	58	34	0	6	1.25
11244580--11244621	21	2.0	21	95	0	75	30	9	14	45	1.77
11248074--11248128	26	2.4	22	79	14	58	47	0	0	52	1.00
11248757--11248810	28	1.9	28	88	0	81	33	1	0	64	1.04
11248754--11248806	19	3.1	16	75	17	52	30	1	0	67	1.01
11248835--11248868	9	3.9	9	88	7	52	35	0	2	61	1.11
11265383--11265647	58	4.6	58	100	0	530	45	13	8	32	1.75
11268497--11268540	11	4.0	11	81	0	52	13	2	6	77	1.07
11268512--11268563	9	5.5	10	84	11	58	5	0	9	84	0.77
11269866--11270130	58	4.6	58	100	0	530	45	13	8	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11287208--11287237	15	1.9	16	93	6	53	36	0	10	53	1.35
11291192--11291286	42	2.2	44	80	15	119	32	15	14	36	1.89
11295155--11295192	18	2.1	18	95	0	67	44	10	31	13	1.77
11297766--11297828	21	3.0	21	85	2	72	33	33	4	28	1.78
11298145--11298180	12	3.0	12	100	0	72	75	0	8	16	1.04
11308871--11309013	39	3.6	39	84	7	168	26	22	27	23	2.00
11310612--11310689	29	2.7	28	84	11	104	25	14	30	29	1.94
11310642--11310968	173	1.9	174	94	0	584	29	14	24	31	1.94
11314043--11314351	154	2.0	156	94	1	550	40	13	10	35	1.79
11321518--11321573	20	2.8	20	72	0	58	37	7	1	53	1.39
11324408--11324470	29	2.2	29	100	0	126	25	11	26	36	1.90
11328997--11329045	21	2.3	20	76	10	53	24	6	18	51	1.69
11329004--11329044	21	1.9	21	85	5	55	29	2	19	48	1.61
11339347--11339556	40	5.3	39	89	4	242	25	21	27	25	1.99
11339294--11339556	120	2.2	120	82	4	309	25	21	27	25	1.99
11339295--11339591	80	3.7	80	81	6	230	26	21	27	24	1.99
11359358--11359402	21	2.1	22	83	4	56	37	8	0	53	1.32
11360025--11360071	23	2.0	23	100	0	94	40	8	17	34	1.79
11361455--11361636	51	3.6	51	84	3	181	24	16	28	31	1.96
11363870--11364003	50	2.7	50	89	1	207	29	23	17	29	1.97
11363868--11364206	51	6.7	51	76	8	239	29	26	15	28	1.96
11363865--11364206	102	3.4	102	80	8	371	29	26	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11374920--11376070	629	1.8	627	97	0	2203	31	15	22	30	1.95
11381761--11381957	50	3.8	50	79	11	195	32	20	23	23	1.98
11381822--11381957	49	2.8	48	82	7	159	31	21	24	22	1.98
11389428--11389460	12	2.8	12	95	0	57	9	33	27	30	1.88
11394169--11394231	21	3.0	21	83	2	72	31	31	6	30	1.83
11397970--11398040	12	5.9	12	71	12	56	11	15	2	70	1.27
11400269--11400313	20	2.2	20	84	7	56	51	11	4	33	1.58
11403307--11403392	43	2.0	43	95	0	154	25	9	24	40	1.85
11419152--11419185	18	1.9	18	88	5	52	52	2	35	8	1.47
11420453--11420506	20	2.7	20	82	0	63	24	20	18	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182