genome.fa.s21.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  176  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53536476--53536546	35	2.0	35	86	8	99	45	11	11	32	1.75
53536486--53536772	35	8.0	33	73	15	148	46	10	11	31	1.74
53536521--53536772	18	13.9	18	76	10	228	46	10	11	31	1.74
53536521--53536804	53	5.3	55	75	15	222	45	10	11	32	1.75
53537060--53537228	3	57.0	3	92	4	274	0	32	0	67	0.91
53537869--53538634	81	9.8	80	83	6	926	34	19	17	28	1.95
53537844--53538633	79	10.1	78	82	7	880	34	19	17	28	1.94
53539469--53539505	19	1.9	19	88	0	56	0	2	10	86	0.67
53545195--53545219	4	6.2	4	100	0	50	52	0	24	24	1.48
53546914--53547126	18	12.0	17	74	8	158	45	11	11	31	1.76
53546914--53547226	35	8.8	35	74	10	183	45	11	12	30	1.77
53546915--53547220	17	17.2	17	71	13	172	45	11	12	31	1.77
53547390--53547456	20	3.5	19	71	19	59	40	7	11	40	1.70
53547415--53547459	18	2.4	19	85	7	56	40	8	11	40	1.72
53547799--53547853	25	2.2	24	81	12	67	0	20	0	80	0.72
53547813--53547864	5	10.2	5	77	10	52	0	17	0	82	0.66
53547773--53547861	26	3.3	27	80	11	101	0	20	0	79	0.73
53547771--53547864	10	10.0	10	82	13	85	0	21	0	78	0.75
53547998--53548048	20	2.6	19	87	12	68	3	11	5	78	1.06
53548000--53548046	19	2.4	19	86	10	60	4	10	6	78	1.06
53547998--53548050	21	2.7	20	82	14	65	3	11	7	77	1.10
53548121--53548154	17	2.0	17	88	0	50	0	17	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53548121--53548182	10	6.2	10	75	12	56	0	25	0	74	0.82
53548144--53548183	3	13.0	3	89	5	62	0	35	0	65	0.93
53548530--53548654	30	4.2	29	79	8	126	41	6	16	35	1.74
53548543--53548655	30	3.9	28	79	9	127	40	5	17	36	1.73
53561123--53561164	22	2.0	21	85	4	57	23	7	0	69	1.13
53564312--53564351	19	2.2	19	86	4	55	55	2	25	17	1.55
53566884--53566909	13	2.0	13	100	0	52	0	38	30	30	1.58
53569479--53569519	21	2.0	21	90	0	64	19	29	21	29	1.98
53571094--53571999	124	7.3	124	99	0	1803	28	20	19	31	1.97
53573311--53573357	21	2.2	21	84	0	58	27	38	8	25	1.85
53574358--53574386	9	3.3	9	90	9	51	10	0	10	79	0.94
53574358--53574388	8	3.8	8	95	4	53	12	0	12	74	1.08
53576967--53577015	19	2.5	20	80	6	57	40	12	20	26	1.87
53578527--53578573	21	2.2	21	84	0	58	27	38	8	25	1.85
53579574--53579602	9	3.3	9	90	9	51	10	0	10	79	0.94
53579574--53579604	8	3.8	8	95	4	53	12	0	12	74	1.08
53582183--53582231	19	2.5	20	80	6	57	40	12	20	26	1.87
53584739--53584802	3	21.3	3	84	6	85	62	1	4	31	1.25
53585153--53585351	100	2.0	100	98	2	382	48	13	17	21	1.80
53585302--53585495	97	2.0	97	100	0	388	27	24	30	16	1.96
53586880--53587319	44	10.3	44	68	15	219	27	21	19	32	1.97
53586930--53587210	87	3.3	87	70	14	294	28	19	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53586809--53587295	170	2.9	170	99	0	956	28	20	19	31	1.97
53588438--53588484	21	2.2	21	84	0	58	27	38	8	25	1.85
53589485--53589513	9	3.3	9	90	9	51	10	0	10	79	0.94
53589485--53589515	8	3.8	8	95	4	53	12	0	12	74	1.08
53592094--53592142	19	2.5	20	80	6	57	40	12	20	26	1.87
53594179--53594217	20	2.1	19	90	9	62	56	5	5	33	1.43
53594653--53594699	3	15.7	3	78	8	51	61	2	6	29	1.32
53595558--53595596	18	2.1	19	85	4	53	58	0	2	38	1.12
53602056--53602123	22	3.3	22	67	32	69	33	13	7	45	1.71
53609841--53609899	27	2.2	27	81	6	66	47	5	0	47	1.24
53611877--53611921	21	2.2	20	84	11	56	44	2	2	51	1.26
53611912--53611966	26	2.2	25	83	3	65	50	0	1	47	1.11
53611972--53612014	22	2.0	22	100	0	86	30	23	18	27	1.98
53619711--53619791	42	2.0	40	95	4	144	27	18	12	41	1.86
53624936--53625221	144	2.0	144	90	1	448	23	15	16	44	1.85
53626353--53626439	29	3.0	29	98	0	165	41	4	3	50	1.40
53632147--53632184	19	2.1	19	85	5	51	57	0	0	42	0.98
53635274--53635395	61	2.0	61	93	0	208	22	17	25	34	1.96
53639248--53639282	14	2.5	14	95	0	61	5	28	37	28	1.80
53651199--53651241	15	2.9	15	89	0	68	72	0	0	27	0.85
53661874--53662000	60	2.1	60	85	2	166	42	11	6	40	1.66
53662727--53662843	60	2.0	60	84	1	155	40	5	11	43	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53666745--53666773	12	2.4	12	100	0	58	6	0	58	34	1.25
53666689--53666776	18	5.1	18	70	13	58	9	5	56	28	1.53
53670306--53670347	21	2.0	21	81	9	50	30	4	16	47	1.67
53684129--53684179	20	2.6	19	81	3	57	41	25	3	29	1.73
53687142--53687170	7	4.3	7	95	4	51	58	0	41	0	0.98
53688728--53688770	18	2.3	18	81	18	52	25	0	27	46	1.53
53701779--53701812	17	2.0	17	88	0	50	64	0	0	35	0.94
53701736--53701854	41	2.8	40	85	11	141	64	0	1	32	1.09
53701811--53701836	11	2.4	11	100	0	52	53	0	7	38	1.30
53702870--53702909	21	1.9	20	85	10	53	55	2	10	32	1.47
53711562--53712089	266	2.0	266	98	0	1029	32	18	25	22	1.97
53712216--53712399	62	3.0	62	93	0	314	41	20	4	33	1.73
53713630--53713687	23	2.5	23	80	2	62	79	13	3	3	0.99
53713631--53713687	12	4.9	11	71	12	51	80	12	3	3	0.96
53714111--53714160	13	3.8	13	84	12	66	82	0	14	4	0.82
53714111--53714161	6	7.8	6	80	20	50	80	0	15	3	0.86
53714103--53714160	20	2.9	20	82	14	75	81	0	13	5	0.86
53715113--53715423	87	3.6	87	88	0	471	30	24	21	23	1.99
53722784--53722861	34	2.4	34	85	8	99	48	0	0	51	1.00
53733406--53733439	15	2.2	16	89	5	52	50	5	14	29	1.67
53736311--53736447	67	2.0	67	91	0	220	32	18	11	36	1.88
53739850--53739925	40	1.9	40	86	0	107	34	5	26	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53741411--53741444	13	2.5	14	90	4	52	50	5	23	20	1.70
53749349--53749389	21	2.0	21	90	0	64	29	21	29	19	1.98
53783245--53784030	4	196.5	4	100	0	1572	50	25	0	24	1.50
53794986--53795152	83	2.0	83	92	0	280	28	20	18	31	1.97
53795069--53796401	100	13.3	100	90	1	1825	24	25	20	29	1.99
53796247--53796402	50	3.1	50	69	7	136	25	27	21	25	1.99
53797703--53797735	7	4.7	7	85	14	50	12	15	0	72	1.12
53798692--53798825	44	3.0	45	81	4	144	35	12	23	28	1.92
53802885--53802910	13	2.0	13	100	0	52	46	15	7	30	1.74
53808563--53808643	29	2.8	29	74	11	76	61	2	6	29	1.33
53808928--53808976	24	2.0	25	84	4	64	30	2	0	67	1.02
53808925--53809010	34	2.5	33	76	16	84	29	1	2	67	1.10
53812776--53812850	37	2.0	37	100	0	150	36	5	21	37	1.76
53814017--53814108	38	2.5	37	82	5	96	28	26	20	25	1.99
53814242--53814295	18	3.1	17	77	17	65	35	20	1	42	1.63
53815519--53815575	29	2.0	29	92	0	96	52	1	0	45	1.11
53834659--53835109	44	10.5	44	71	11	233	30	21	21	26	1.98
53834873--53835076	43	4.7	43	76	10	173	30	23	20	25	1.98
53834744--53835121	169	2.2	164	77	12	372	31	20	21	25	1.98
53834916--53835121	87	2.4	85	91	4	319	30	21	22	25	1.99
53835903--53835942	20	2.0	20	85	9	55	55	25	17	2	1.55
53836950--53836996	9	4.5	10	77	17	51	31	4	0	63	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53836950--53837064	10	11.4	10	68	15	51	34	4	5	55	1.42
53837505--53837712	109	1.9	109	93	2	355	29	16	20	33	1.95
53838081--53838126	11	4.2	11	80	0	56	17	17	13	52	1.75
53838642--53838671	12	2.4	13	94	5	53	16	0	6	76	0.99
53851350--53851387	18	2.0	19	90	10	60	55	5	5	34	1.45
53854156--53854303	74	2.0	74	90	2	235	41	11	7	39	1.69
53856198--53856297	39	2.5	39	78	10	114	47	24	14	15	1.81
53859517--53859656	65	2.2	65	82	1	165	39	15	7	37	1.77
53861672--53862450	156	5.0	154	86	4	1012	34	12	22	29	1.91
53861669--53862445	316	2.5	311	85	5	1048	34	12	22	29	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182