genome.fa.s21.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  36  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11671926--11672013	45	2.0	45	93	0	149	21	17	17	44	1.87
11674794--11674839	24	1.9	24	86	0	65	45	4	8	41	1.55
11676366--11676452	39	2.2	38	84	14	104	56	1	1	41	1.14
11676401--11676439	18	2.2	18	85	0	51	56	0	0	43	0.99
11679578--11679617	16	2.5	16	88	8	55	25	10	2	62	1.39
11679587--11679679	27	3.6	27	74	16	72	23	12	2	61	1.43
11679763--11679949	86	2.2	86	100	0	374	31	8	4	55	1.49
11684998--11685093	48	2.0	48	91	4	158	43	12	18	25	1.85
11693655--11693695	18	2.3	18	87	8	57	17	31	29	21	1.96
11696028--11696395	26	14.2	26	99	0	727	35	26	7	30	1.84
11696661--11696732	29	2.6	29	84	4	94	26	27	22	23	1.99
11696666--11696785	29	4.2	28	78	6	89	29	28	19	23	1.98
11696743--11696786	15	3.0	15	83	3	54	29	22	20	27	1.99
11700230--11700521	132	2.2	131	79	4	293	34	21	18	25	1.96
11714679--11714760	26	3.2	26	84	6	112	31	6	24	37	1.80
11716798--11717157	179	2.0	179	98	0	702	25	13	22	38	1.91
11723267--11723303	18	2.1	18	100	0	74	21	0	40	37	1.54
11723690--11723749	23	2.5	24	86	5	86	21	5	5	68	1.29
11731713--11731754	22	1.9	21	85	9	57	26	2	2	69	1.13
11731851--11731945	33	3.0	31	82	14	124	36	6	1	55	1.32
11739281--11739596	89	3.4	89	74	12	235	32	18	21	27	1.97
11739328--11739508	98	1.8	98	83	2	238	32	16	21	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11739427--11739544	45	2.6	45	82	1	139	27	19	22	30	1.98
11742505--11742564	23	2.5	24	86	5	86	21	5	5	68	1.29
11743048--11743087	13	3.0	13	81	3	53	35	5	2	57	1.34
11750638--11750683	24	2.0	23	91	4	74	30	15	2	52	1.55
11752685--11752829	72	2.0	72	87	0	209	34	17	22	25	1.96
11753130--11753248	60	2.0	60	91	0	193	35	12	26	26	1.92
11757528--11757577	21	2.3	22	86	6	66	18	6	8	68	1.36
11757870--11757938	30	2.4	28	75	11	68	30	5	5	57	1.45
11758044--11758087	23	2.0	22	95	4	79	34	4	13	47	1.63
11760746--11760811	19	3.2	21	87	6	64	36	19	9	34	1.84
11760763--11760860	19	5.2	19	88	7	146	35	15	9	39	1.79
11760763--11760857	36	2.5	36	91	6	145	35	14	9	40	1.79
11779080--11779187	26	4.2	26	92	0	180	32	8	24	35	1.85
11782388--11782499	45	2.5	45	77	1	118	29	16	26	26	1.97
11782510--11782597	45	2.0	45	81	0	104	30	17	25	27	1.97
11782774--11782860	44	2.0	44	81	0	102	29	14	25	29	1.95
11789133--11789379	123	2.0	123	100	0	494	27	12	25	34	1.93
11789659--11789708	21	2.3	22	82	6	57	20	2	8	70	1.23
11790174--11790217	23	2.0	22	95	4	79	34	4	13	47	1.63
11792039--11792148	36	3.2	34	69	17	84	49	11	9	30	1.70
11796734--11796810	39	2.0	39	92	0	127	33	27	18	20	1.96
11808481--11808948	254	1.8	254	86	1	670	37	18	13	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11811690--11811740	18	2.6	20	71	22	54	66	3	5	23	1.30
11816431--11816506	40	1.9	40	91	0	125	35	35	14	14	1.87
11816710--11816782	34	2.1	35	84	2	94	38	21	12	27	1.89
11816826--11816892	27	2.4	27	78	11	66	29	16	17	35	1.92
11818761--11818786	10	2.6	10	100	0	52	61	26	0	11	1.30
11821026--11821102	26	3.0	26	90	5	129	59	33	2	3	1.29
11833819--11834607	74	10.7	74	87	4	1069	30	16	21	31	1.95
11833833--11834612	149	5.3	146	89	3	1080	30	16	21	31	1.96
11835462--11835534	27	2.8	24	84	13	92	53	35	5	5	1.47
11835462--11835534	26	2.8	25	85	8	101	53	35	5	5	1.47
11835486--11835543	27	2.1	28	84	6	75	62	29	3	5	1.33
11836307--11836349	23	2.0	23	86	9	63	27	13	6	51	1.67
11836665--11836699	16	2.3	15	90	5	52	31	2	2	62	1.24
11848564--11849279	74	9.7	74	87	3	1032	31	16	21	31	1.95
11848579--11849284	221	3.2	220	87	2	1045	31	16	21	30	1.96
11848577--11849284	149	4.8	149	91	1	1102	31	16	21	30	1.95
11860398--11860448	21	2.4	21	83	0	66	29	7	19	43	1.79
11862414--11862514	33	3.1	32	74	16	100	46	21	13	17	1.83
11862423--11862564	64	2.2	65	84	3	180	43	23	13	19	1.86
11862423--11862564	32	4.4	32	73	11	110	43	23	13	19	1.86
11866339--11866371	16	2.1	16	100	0	66	30	24	6	39	1.79
11873142--11873184	16	2.8	16	82	3	52	62	13	0	23	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11885006--11885067	34	1.9	31	87	9	88	59	0	0	40	0.97
11886961--11887002	17	2.4	18	80	7	52	33	19	9	38	1.84
11888528--11888573	23	2.0	24	83	12	60	54	2	4	39	1.32
11890554--11890599	23	2.0	24	83	12	60	54	2	4	39	1.32
11890659--11890739	39	2.1	39	95	0	144	24	27	4	43	1.75
11892101--11893446	44	31.1	44	88	2	1773	23	31	16	29	1.96
11893653--11893775	61	2.0	64	88	7	191	38	12	16	33	1.85
11901489--11901567	39	2.0	39	95	0	140	24	29	3	43	1.72
11904628--11904696	30	2.3	30	94	0	120	30	50	4	14	1.62
11905023--11905154	23	5.6	25	75	10	100	34	6	3	55	1.43
11905176--11905238	25	2.5	24	84	7	72	30	4	6	58	1.43
11905102--11905276	79	2.2	78	80	7	192	32	5	4	57	1.41
11905300--11905355	25	2.3	24	79	14	62	37	16	3	42	1.65
11906595--11906636	21	2.0	21	90	0	66	26	19	14	40	1.89
11915750--11915942	50	3.8	51	71	8	153	30	11	19	38	1.87
11919654--11919698	13	3.4	13	87	6	72	13	11	6	68	1.37
11919566--11919774	100	2.1	102	89	1	323	22	17	18	41	1.90
11919682--11919994	73	4.3	74	83	6	397	29	16	19	34	1.94
11920063--11920309	99	2.5	99	91	7	401	28	14	16	40	1.87
11921109--11921237	30	4.3	30	92	0	204	25	48	7	18	1.75
11922824--11922848	12	2.1	12	100	0	50	0	24	0	76	0.80
11930336--11930392	25	2.2	25	84	9	69	43	0	1	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11934597--11934671	38	2.0	38	100	0	150	46	5	5	42	1.49
11940730--11940800	26	2.8	26	81	12	69	15	9	5	69	1.35
11943024--11943064	16	2.6	16	88	3	57	39	4	4	51	1.45
11943944--11944015	30	2.4	30	86	4	92	27	20	5	45	1.73
11944411--11944452	18	2.3	19	84	12	61	64	0	35	0	0.94
11944877--11944931	17	3.1	17	82	17	76	80	0	20	0	0.72
11944877--11944929	16	3.1	16	84	15	70	81	0	18	0	0.70
11945106--11945135	5	6.0	5	100	0	60	20	0	0	80	0.72
11945302--11945343	21	2.0	20	90	4	66	35	14	9	40	1.78
11945302--11945343	20	2.1	19	86	8	57	35	14	9	40	1.78
11945456--11945940	17	26.8	18	67	19	172	31	13	8	46	1.72
11945461--11945864	35	11.3	35	67	16	129	32	12	7	47	1.69
11945454--11945574	18	6.9	17	67	17	52	32	12	6	48	1.66
11945667--11945831	70	2.3	69	79	7	172	33	13	8	44	1.74
11945891--11945940	18	2.8	18	81	9	57	32	16	10	42	1.81
11946003--11946044	21	2.0	22	90	4	68	40	2	9	47	1.49
11946042--11946084	17	2.4	18	76	3	52	37	16	9	37	1.81
11946106--11946159	17	2.9	19	86	10	85	29	12	11	46	1.77
11946106--11946161	18	3.1	18	87	7	87	28	12	10	48	1.74
11946647--11946739	45	2.1	45	97	0	177	23	13	10	51	1.73
11950604--11950723	43	2.9	41	73	12	127	33	22	21	22	1.97
11950843--11951558	207	3.5	207	93	0	1193	29	18	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11951953--11952077	19	6.9	18	78	17	100	36	11	15	36	1.83
11951960--11952077	35	3.3	35	95	3	200	37	11	14	36	1.83
11957796--11957851	15	3.7	15	78	7	69	87	0	12	0	0.54
11957796--11957851	23	2.5	22	79	2	67	87	0	12	0	0.54
11958176--11958208	13	2.4	14	90	5	50	69	3	0	27	1.03
11958204--11958305	30	3.4	30	83	2	125	30	22	2	44	1.68
11959165--11959219	17	3.1	17	82	17	76	80	0	20	0	0.72
11959165--11959217	16	3.1	16	84	15	70	81	0	18	0	0.70
11959394--11959423	5	6.0	5	100	0	60	20	0	0	80	0.72
11959749--11959838	35	2.5	35	80	5	101	31	12	5	51	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182