genome.fa.s21.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  13  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4414273--4414301	14	2.0	15	93	6	51	48	0	0	51	1.00
4414272--4414315	21	2.2	21	88	8	65	52	0	0	47	1.00
4420700--4420821	41	3.0	41	80	2	129	22	31	13	31	1.93
4425996--4426089	45	2.1	45	93	0	161	29	25	18	26	1.98
4426086--4426483	51	7.9	50	79	5	442	31	29	16	22	1.96
4426093--4426479	101	3.8	101	96	1	686	32	29	16	22	1.95
4431093--4431218	28	4.5	28	87	2	173	33	26	11	27	1.92
4436781--4436944	40	4.1	40	92	3	233	21	25	29	24	1.99
4439199--4439382	41	4.6	40	84	4	228	24	22	26	26	2.00
4439199--4439349	81	1.9	81	94	0	266	24	23	27	25	2.00
4442376--4442449	34	2.2	34	90	0	112	32	18	17	31	1.95
4443984--4444091	34	3.2	33	80	2	90	25	14	16	42	1.87
4455329--4455401	36	2.0	36	89	5	112	30	28	2	38	1.71
4464913--4465558	323	2.0	323	100	0	1292	34	16	9	38	1.82
4466547--4466571	7	3.6	7	100	0	50	28	0	12	60	1.32
4467154--4467191	18	2.1	18	95	0	67	23	26	10	39	1.87
4470702--4470951	127	2.0	126	89	2	385	28	18	15	37	1.92
4471058--4471122	34	1.9	34	84	6	87	43	20	1	35	1.61
4471147--4471232	26	3.5	26	75	18	101	44	15	0	40	1.46
4475411--4475489	37	2.1	37	90	0	122	25	31	18	24	1.98
4475608--4476499	49	18.3	49	98	0	1684	30	28	8	32	1.86
4495424--4495471	20	2.4	20	85	0	60	25	18	16	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4495428--4495491	30	2.1	30	88	5	94	21	20	18	39	1.93
4499551--4499708	48	3.3	48	88	0	226	37	19	6	36	1.77
4510568--4510625	28	2.1	28	100	0	116	25	10	8	55	1.62
4511731--4511781	18	2.6	21	70	23	56	47	1	3	47	1.32
4512343--4512591	90	2.7	86	82	11	270	36	19	10	34	1.86
4512710--4512768	21	2.9	21	87	2	75	59	1	0	38	1.08
4512764--4512795	17	1.9	17	93	6	57	78	6	0	15	0.95
4512985--4513069	11	8.6	9	73	16	53	25	5	0	68	1.12
4512985--4513069	20	4.2	20	75	10	75	25	5	0	68	1.12
4513002--4513096	40	2.3	41	83	5	113	24	5	1	69	1.15
4512985--4513068	10	8.3	10	72	7	62	25	5	0	69	1.11
4513033--4513106	21	3.7	20	78	5	87	22	4	1	71	1.10
4513073--4513140	31	2.2	30	82	12	77	30	1	1	66	1.10
4519970--4520466	75	6.6	75	95	1	811	31	24	19	24	1.98
4527102--4527134	12	2.6	13	90	4	50	36	9	9	45	1.68
4528612--4528637	11	2.4	11	100	0	52	15	0	0	84	0.62
4528978--4529029	16	3.2	16	91	0	86	28	0	32	38	1.57
4529245--4529299	15	3.4	16	80	16	53	50	1	0	47	1.11
4529265--4529299	18	2.0	17	88	5	52	54	0	0	45	0.99
4530800--4530836	19	1.9	19	94	0	65	29	18	18	32	1.96
4531873--4531902	15	2.0	15	93	0	51	50	20	23	6	1.71
4532233--4532332	28	3.6	28	94	1	175	42	6	0	52	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4535632--4535681	27	1.9	25	84	8	64	64	2	0	34	1.05
4540854--4540929	38	2.0	38	97	0	143	17	38	28	15	1.90
4546186--4547213	40	25.7	40	98	0	1867	25	27	22	25	2.00
4547522--4547600	29	2.7	29	86	5	106	27	32	15	24	1.95
4555806--4555839	7	4.5	8	92	7	54	70	0	17	11	1.16
4555807--4555849	14	3.1	14	86	6	52	65	0	20	13	1.27
4557206--4557492	44	6.5	44	72	9	210	31	18	20	29	1.97
4557206--4557605	219	1.8	219	90	1	649	33	17	20	29	1.95
4557599--4559189	100	15.9	100	90	1	1771	31	23	21	23	1.99
4558757--4559112	50	7.1	50	65	17	202	29	24	23	23	1.99
4566568--4566718	30	5.1	30	76	0	151	33	11	25	29	1.91
4566569--4566718	60	2.5	60	85	1	212	33	11	26	29	1.91
4572456--4572494	21	1.9	21	84	5	53	5	20	0	74	1.01
4588158--4588349	40	4.8	40	97	0	357	25	20	29	24	1.99
4592449--4592532	43	2.0	42	85	2	114	26	21	2	50	1.61
4612690--4612727	20	1.9	20	84	10	51	26	18	28	26	1.98
4616506--4616568	13	4.8	13	94	3	108	15	7	6	69	1.33
4616511--4616566	27	2.1	27	100	0	112	14	7	7	71	1.29
4617574--4617615	21	2.0	20	86	13	59	33	9	21	35	1.86
4628101--4628245	43	3.4	43	80	8	161	34	27	15	22	1.94
4628101--4628258	86	1.8	85	84	6	212	32	27	17	22	1.96
4638470--4638692	40	5.6	40	86	3	236	23	21	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4638545--4638727	79	2.3	80	82	1	226	24	20	28	26	1.99
4646125--4646387	40	6.6	40	88	3	325	24	20	27	26	1.99
4646164--4646422	80	3.3	80	85	3	256	25	20	27	25	1.99
4656228--4656399	86	2.0	86	98	0	335	30	26	12	30	1.93
4663080--4663268	38	4.9	38	85	6	220	29	26	22	21	1.99
4663080--4663282	76	2.6	78	83	6	243	30	27	21	21	1.98
4667573--4667688	27	4.3	27	87	2	162	34	19	21	24	1.96
4667573--4667688	53	2.2	54	87	4	164	34	19	21	24	1.96
4668076--4668134	28	2.1	27	81	9	66	20	27	27	25	1.99
4668121--4668197	33	2.3	33	88	0	118	28	23	24	23	1.99
4671305--4671482	27	6.6	27	83	3	205	26	15	28	29	1.96
4671306--4671461	82	1.9	81	88	3	233	26	15	28	29	1.96
4671302--4671482	82	2.2	81	83	2	229	27	15	27	29	1.96
4693393--4693541	44	3.4	44	86	2	194	38	26	13	22	1.91
4696265--4696462	66	3.0	66	100	0	396	40	21	9	28	1.83
4704402--4704501	33	3.0	33	98	0	191	31	22	12	35	1.90
4711335--4711432	27	3.5	28	90	2	135	26	13	28	31	1.94
4711363--4711445	27	3.0	27	87	5	96	30	12	25	32	1.92
4711335--4711446	28	4.0	27	83	6	98	28	12	25	33	1.92
4713593--4713692	33	3.0	33	100	0	200	31	21	12	36	1.89
4716259--4716816	279	2.0	279	92	0	936	37	19	13	28	1.90
4718384--4718508	42	3.0	41	80	10	144	23	18	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4718379--4718516	43	3.2	42	77	12	147	23	16	26	33	1.96
4719233--4719276	23	1.9	23	90	0	70	18	2	27	52	1.57
4719233--4719280	11	4.4	11	80	17	55	18	2	27	52	1.57
4721099--4721270	40	4.3	40	88	2	222	25	27	21	25	1.99
4721101--4721323	40	5.6	39	83	5	216	25	27	21	25	1.99
4721099--4721323	80	2.8	79	80	7	240	25	27	21	25	1.99
4721255--4721332	40	1.9	41	82	10	97	26	28	20	24	1.99
4723313--4723370	28	2.1	28	100	0	116	29	10	24	36	1.88
4724713--4724759	22	2.1	22	100	0	94	31	8	19	40	1.81
4726650--4726698	22	2.2	22	100	0	98	34	16	20	28	1.94
4731017--4731188	93	1.8	93	93	2	301	29	29	20	20	1.98
4731010--4731185	46	3.8	46	77	14	200	30	29	19	20	1.97
4735358--4735412	24	2.2	24	87	3	83	27	18	16	38	1.92
4738266--4738411	40	3.6	41	82	9	176	23	22	28	26	1.99
4738266--4738434	80	2.1	80	80	7	184	24	21	27	26	2.00
4741582--4741794	94	2.3	94	81	3	241	23	29	20	26	1.99
4741436--4741794	47	7.7	46	71	12	214	23	30	20	26	1.99
4743545--4743570	9	2.9	9	100	0	52	11	0	23	65	1.25
4744304--4744469	42	4.0	42	76	1	154	30	16	25	27	1.97
4746498--4746561	24	2.6	24	92	2	101	51	7	12	28	1.67
4753055--4753104	25	2.0	25	100	0	100	56	8	8	28	1.57
4755802--4755930	41	3.1	40	85	5	168	23	17	19	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4760398--4760478	41	2.0	41	90	4	130	38	9	11	40	1.74
4764346--4764427	43	1.9	43	85	5	112	23	17	28	31	1.96
4768548--4769482	47	19.9	47	97	0	1685	24	28	12	35	1.91
4770883--4771140	131	2.0	130	96	0	480	24	30	12	32	1.92
4774098--4774159	30	2.1	30	96	0	115	37	9	8	45	1.67
4780923--4781232	47	6.6	47	95	0	521	32	8	30	29	1.86
4782648--4782750	43	2.4	43	98	0	197	23	15	34	26	1.94
4782732--4782805	29	2.6	29	89	4	105	25	16	32	25	1.96
4783116--4783351	40	5.9	40	80	4	201	24	22	28	25	1.99
4792858--4792971	28	3.9	27	72	19	79	25	27	21	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182