genome.fa.s21.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  154  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47310580--47310629	18	2.8	18	81	6	57	32	10	20	38	1.85
47312410--47312865	228	2.0	228	98	0	876	39	19	15	25	1.90
47313095--47313146	22	2.4	22	90	0	86	42	13	23	21	1.88
47315217--47315263	25	2.0	25	83	8	62	61	4	2	31	1.27
47322481--47322548	3	22.3	3	75	8	57	33	2	1	61	1.20
47323183--47323216	17	1.9	18	88	5	52	41	0	23	35	1.55
47330048--47330089	13	3.2	13	82	3	57	40	0	2	57	1.12
47330055--47330109	24	2.4	22	77	17	58	45	1	1	50	1.22
47336425--47336491	23	3.0	23	75	16	70	47	0	1	50	1.10
47342546--47342598	18	2.9	18	80	2	61	41	45	1	11	1.51
47342696--47342753	9	6.4	9	84	7	82	27	10	20	41	1.85
47345365--47345412	19	2.5	20	82	3	62	60	6	8	25	1.49
47352876--47352925	20	2.5	19	87	6	64	56	4	10	30	1.51
47356058--47356187	53	2.4	53	78	14	133	35	3	0	61	1.12
47356101--47356217	50	2.3	53	82	10	136	29	1	0	68	1.00
47356106--47356200	38	2.6	37	72	9	86	32	2	0	65	1.05
47356145--47356206	18	3.2	20	78	17	69	29	0	0	70	0.87
47356145--47356214	20	3.7	19	80	16	74	28	0	0	71	0.86
47364038--47364124	29	2.9	29	91	8	131	31	2	0	66	1.04
47370455--47370490	18	2.1	18	94	5	65	16	33	38	11	1.84
47370815--47370859	23	1.9	24	86	4	65	20	2	51	26	1.59
47372439--47373445	507	2.0	507	90	1	1606	28	17	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47374590--47375165	287	2.0	287	100	0	1152	43	7	7	41	1.62
47375179--47375224	19	2.3	20	96	3	85	47	17	10	23	1.79
47379064--47379166	47	2.2	48	89	1	154	31	18	14	35	1.91
47384807--47384858	26	2.0	26	100	0	104	38	0	38	23	1.55
47386238--47386649	54	7.8	54	75	7	269	27	17	15	39	1.89
47386238--47386528	162	1.8	161	83	3	388	26	15	15	42	1.87
47386865--47386922	23	2.5	23	83	5	64	22	18	17	41	1.90
47389160--47389184	3	8.3	3	100	0	50	32	0	36	32	1.58
47392698--47392748	21	2.4	21	80	6	59	76	7	9	5	1.15
47394286--47394313	13	2.2	13	100	0	56	46	0	10	42	1.38
47401965--47402317	47	7.6	47	91	1	568	38	13	19	28	1.90
47401988--47402317	93	3.5	93	97	0	624	38	13	19	28	1.90
47403162--47403290	43	3.0	42	78	17	147	30	27	19	22	1.98
47409603--47409663	28	2.2	28	96	0	113	27	6	24	40	1.80
47415617--47415671	9	6.2	9	89	4	76	23	10	23	41	1.86
47415618--47415670	17	3.1	17	88	2	70	24	11	24	39	1.88
47415831--47415855	12	2.1	12	100	0	50	16	24	36	24	1.94
47416635--47416666	4	7.8	4	93	6	55	75	0	25	0	0.81
47417798--47417854	20	3.0	18	82	10	69	45	0	29	24	1.53
47417811--47417865	27	2.0	27	86	6	76	45	0	27	27	1.54
47417802--47417864	19	3.3	20	79	14	71	44	0	28	26	1.55
47430000--47430036	15	2.4	16	86	13	51	2	10	2	83	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47431667--47431695	3	9.7	3	100	0	58	34	34	31	0	1.58
47438388--47438439	21	2.5	21	77	0	68	51	21	5	21	1.68
47438974--47439031	16	3.8	15	85	14	75	13	22	24	39	1.90
47448888--47448963	18	4.4	18	90	4	113	36	25	7	30	1.84
47448896--47448939	9	4.9	9	77	0	52	31	29	6	31	1.84
47450002--47450072	25	2.9	24	85	10	83	42	2	0	54	1.14
47450002--47450072	24	3.0	23	84	14	83	42	2	0	54	1.14
47450392--47450739	42	8.3	43	81	6	340	31	30	16	21	1.95
47450386--47450711	85	3.9	82	81	8	331	31	30	16	21	1.95
47458380--47458412	7	4.4	8	85	14	52	42	33	0	24	1.55
47458721--47458869	7	20.7	7	71	9	50	46	32	2	18	1.60
47458795--47458869	14	5.3	14	77	3	78	52	29	1	17	1.53
47458795--47458869	21	3.5	21	79	1	78	52	29	1	17	1.53
47458880--47458931	14	3.8	14	79	5	61	50	26	0	23	1.50
47459100--47459267	41	4.1	41	76	7	162	32	26	19	21	1.97
47459320--47459452	40	3.3	40	76	2	133	22	23	20	33	1.97
47459944--47459988	20	2.2	20	88	7	65	73	6	6	13	1.24
47459944--47459994	19	2.5	19	84	9	57	74	5	7	11	1.21
47461657--47461710	26	2.1	26	96	0	99	27	16	14	40	1.88
47465861--47465935	26	2.9	26	83	13	77	38	8	14	38	1.76
47474277--47474362	45	1.9	45	85	0	118	22	19	12	45	1.84
47478205--47478241	17	2.1	18	85	14	51	51	13	5	29	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47482093--47482695	44	13.7	44	78	6	526	29	24	15	30	1.96
47482093--47482724	132	4.8	131	87	4	728	29	24	15	29	1.96
47485885--47485970	45	1.9	45	100	0	172	37	16	15	31	1.89
47503774--47503833	30	2.0	31	86	3	86	65	3	3	28	1.25
47503838--47503883	22	2.1	21	88	4	65	56	6	4	32	1.45
47513596--47513620	12	2.1	12	100	0	50	24	20	32	24	1.98
47521640--47522032	161	2.4	161	96	0	716	33	18	21	26	1.96
47527439--47527529	37	2.5	37	85	5	123	16	10	32	39	1.84
47530074--47530150	37	2.1	37	90	0	118	25	32	19	22	1.97
47530271--47530603	47	7.1	47	96	0	594	28	30	9	31	1.88
47534766--47534791	13	2.0	13	100	0	52	38	7	15	38	1.76
47536682--47536732	19	2.5	20	81	9	68	37	0	11	50	1.39
47536692--47536739	19	2.8	17	84	9	53	41	0	10	47	1.37
47541703--47541746	23	1.9	23	85	0	61	45	20	13	20	1.85
47541731--47541927	47	4.2	47	89	4	202	40	16	16	25	1.90
47541767--47541939	23	7.4	24	75	4	174	42	14	18	24	1.88
47541767--47541939	47	3.7	47	95	0	301	42	14	18	24	1.88
47542779--47542908	43	3.0	42	78	16	158	30	28	17	23	1.97
47552456--47552600	51	2.8	50	77	8	157	30	27	17	24	1.97
47552454--47552626	51	3.4	50	72	12	145	29	27	16	26	1.97
47555088--47555132	23	2.0	23	81	0	54	48	0	2	48	1.13
47575733--47575778	23	2.0	23	83	8	58	6	13	2	78	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47582719--47582755	15	2.3	17	86	9	51	37	0	10	51	1.37
47585183--47585826	322	2.0	322	100	0	1288	30	16	18	34	1.93
47586393--47586429	15	2.3	17	86	9	51	37	0	10	51	1.37
47595085--47595190	46	2.3	46	82	8	126	59	0	37	1	1.15
47595704--47595744	20	2.0	20	85	4	55	29	0	2	68	1.03
47600211--47600245	14	2.5	14	90	0	52	34	22	5	37	1.78
47601471--47601759	62	4.7	61	88	4	397	48	9	6	35	1.61
47601495--47601732	123	1.9	123	92	3	399	47	9	5	36	1.61
47605130--47605173	20	2.2	20	88	4	63	6	22	6	63	1.43
47610045--47610075	16	1.9	16	100	0	62	29	0	0	70	0.87
47612420--47612523	49	2.1	49	90	0	163	31	7	11	49	1.67
47614218--47614253	18	2.0	18	100	0	72	38	0	0	61	0.96
47613912--47614513	120	5.0	120	95	2	1079	42	0	4	51	1.27
47615717--47615745	3	10.0	3	92	7	51	34	31	0	34	1.58
47623163--47623352	65	2.9	64	88	1	281	36	21	8	34	1.83
47627646--47627676	16	1.9	16	93	0	53	38	0	12	48	1.42
47630365--47630485	63	1.9	63	87	1	179	28	5	32	33	1.81
47630365--47630503	64	2.2	63	83	3	163	30	5	32	31	1.81
47630365--47630520	64	2.5	64	80	11	153	30	6	33	30	1.83
47636933--47637025	7	13.3	7	76	12	66	47	0	20	32	1.51
47636936--47636987	21	2.5	21	88	11	81	57	0	11	30	1.34
47639941--47640001	30	2.0	30	100	0	122	22	13	16	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47641836--47641897	31	2.0	31	100	0	124	32	19	3	45	1.66
47651597--47651782	54	3.4	55	81	8	175	6	49	4	38	1.51
47651647--47651723	24	3.0	24	67	20	64	2	51	2	42	1.29
47653261--47653294	15	2.3	15	89	0	50	8	8	47	35	1.66
47660585--47660613	12	2.3	13	94	5	51	82	17	0	0	0.66
47660585--47660614	13	2.3	13	94	0	51	83	16	0	0	0.65
47672042--47672074	14	2.4	14	94	0	57	24	0	3	72	0.98
47672050--47672088	20	2.0	20	89	0	60	25	2	2	69	1.14
47672101--47672143	22	2.0	21	82	17	52	37	2	2	58	1.24
47675745--47675769	12	2.1	12	100	0	50	52	8	16	24	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182