genome.fa.s21.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  155  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47678222--47678254	14	2.3	15	89	5	50	27	12	33	27	1.92
47679587--47679725	43	3.2	42	66	15	102	26	28	24	20	1.99
47679578--47680204	263	2.4	263	82	2	724	27	24	24	23	2.00
47679575--47680211	88	7.2	88	80	5	615	27	24	24	23	2.00
47680198--47680812	132	4.7	131	92	1	955	27	15	26	30	1.96
47680190--47680812	44	14.1	43	74	10	458	27	15	26	30	1.96
47680190--47680812	88	7.1	87	76	6	524	27	15	26	30	1.96
47681437--47681489	19	2.8	17	83	13	52	20	5	0	73	1.03
47682123--47682166	3	14.7	3	87	0	61	25	0	4	70	1.06
47682175--47682223	24	2.2	24	82	10	59	36	8	6	48	1.58
47685941--47686036	44	2.2	44	92	1	156	39	11	22	26	1.88
47686054--47686302	50	5.0	50	87	1	338	27	20	30	21	1.98
47693103--47693134	9	3.6	9	91	0	55	31	3	21	43	1.68
47693178--47693204	13	2.1	13	100	0	54	37	11	0	51	1.37
47697889--47698131	50	4.8	50	84	0	297	20	30	21	26	1.98
47697889--47698131	100	2.4	100	88	0	351	20	30	21	26	1.98
47704029--47704083	27	2.0	27	89	0	83	18	12	45	23	1.83
47704280--47704312	13	2.8	12	86	13	50	27	15	18	39	1.90
47704912--47705060	50	2.8	53	86	7	196	24	22	30	22	1.99
47712789--47712898	41	2.7	42	85	5	154	31	20	25	22	1.98
47712872--47712924	26	2.0	26	92	0	88	18	20	33	26	1.96
47712898--47713012	43	2.7	42	81	13	137	20	16	26	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47715165--47715216	14	3.2	18	70	30	53	26	3	0	69	1.06
47721182--47721245	27	2.4	27	91	0	101	32	17	15	34	1.91
47722968--47723027	20	3.0	20	82	0	75	33	8	15	43	1.76
47723660--47723699	21	1.9	21	85	10	55	27	22	15	35	1.94
47726173--47726362	94	2.0	94	97	0	362	41	21	7	29	1.81
47726739--47727286	272	2.0	271	95	0	979	32	16	14	37	1.89
47745864--47745999	39	3.5	38	75	5	119	39	18	19	22	1.92
47746055--47746111	30	1.9	30	96	0	105	24	24	19	31	1.98
47746079--47746267	41	4.6	41	88	5	265	21	23	22	32	1.98
47746079--47746267	84	2.3	82	88	3	272	21	23	22	32	1.98
47746351--47746389	19	2.2	19	86	9	55	53	0	5	41	1.23
47746514--47746543	7	4.3	7	100	0	60	26	0	33	40	1.57
47746487--47746543	22	2.6	22	83	2	62	29	0	29	40	1.57
47746563--47746614	15	3.5	15	76	7	52	21	0	44	34	1.52
47746542--47746620	22	3.6	22	80	8	81	25	0	39	35	1.56
47753020--47753065	20	2.3	20	85	14	60	58	2	4	34	1.30
47753074--47753199	43	2.9	44	83	4	159	27	13	30	27	1.94
47753087--47753281	43	4.5	44	77	8	159	29	16	28	25	1.97
47753127--47753315	43	4.4	43	81	4	184	28	17	28	26	1.98
47753793--47753863	28	2.5	28	73	8	72	46	2	4	46	1.37
47754761--47754800	20	2.0	20	85	9	55	22	27	0	50	1.50
47766345--47766518	87	2.0	88	89	5	273	37	22	7	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47766531--47766558	13	2.2	13	100	0	56	71	0	7	21	1.09
47766558--47766605	18	2.6	19	77	6	55	62	0	2	35	1.07
47766869--47766939	19	3.7	19	73	3	79	26	4	2	66	1.24
47766802--47766902	46	2.1	47	82	7	125	33	5	1	58	1.34
47766869--47766939	18	3.7	18	73	12	61	26	4	2	66	1.24
47767041--47767213	89	2.0	89	87	5	253	31	10	19	37	1.87
47767659--47767709	27	1.9	26	84	4	66	58	0	1	39	1.09
47767716--47767751	8	4.2	8	86	13	54	75	0	2	22	0.94
47767704--47767748	18	2.4	18	92	3	72	73	0	4	22	1.01
47767985--47768037	27	2.0	27	81	7	63	28	1	3	66	1.20
47768016--47768073	30	1.9	31	86	6	84	31	3	1	63	1.21
47768082--47768298	89	2.4	89	87	4	312	33	9	22	35	1.86
47769522--47769555	17	1.9	17	88	5	50	0	17	0	82	0.67
47774281--47774393	44	2.5	45	85	1	147	25	21	14	38	1.91
47774281--47774441	45	3.6	45	80	8	152	24	21	13	39	1.90
47776650--47776951	142	2.1	144	80	6	335	44	14	11	29	1.79
47780972--47781141	46	3.7	46	86	1	216	28	24	20	27	1.99
47783043--47783094	25	2.1	25	96	0	95	36	0	44	19	1.51
47784485--47784510	12	2.2	12	100	0	52	11	0	19	69	1.18
47792952--47793018	9	7.4	9	81	6	82	25	8	23	41	1.83
47792950--47793018	18	3.8	18	90	0	111	27	8	23	40	1.84
47793072--47793108	9	4.1	9	92	0	65	45	13	10	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47793287--47793346	30	2.0	31	86	3	86	20	40	0	40	1.52
47803380--47803414	17	2.1	17	94	0	61	45	17	5	31	1.71
47803384--47803422	17	2.3	17	86	0	51	43	15	2	38	1.60
47804365--47804435	30	2.5	29	80	11	85	45	16	1	36	1.57
47804365--47804439	28	2.6	30	80	16	88	45	17	1	36	1.57
47808231--47808275	9	5.0	9	88	0	63	15	42	6	35	1.73
47810428--47810496	10	6.7	10	74	9	50	43	5	0	50	1.26
47810440--47810486	16	2.9	16	90	6	69	46	6	0	46	1.28
47817796--47817820	2	12.5	2	100	0	50	52	0	0	48	1.00
47818503--47818552	24	2.1	23	81	3	55	36	0	4	60	1.16
47819844--47819873	15	1.9	16	93	6	53	13	0	13	73	1.10
47822833--47822874	3	14.0	3	100	0	84	33	33	0	33	1.58
47824069--47824119	25	2.0	25	81	7	59	45	1	1	50	1.24
47842469--47842569	26	3.9	26	84	6	125	35	14	7	41	1.76
47842469--47842567	52	1.9	51	91	2	162	34	15	8	42	1.76
47849667--47849717	24	2.1	24	96	0	93	29	27	13	29	1.94
47850956--47851004	25	2.0	25	100	0	98	28	24	6	40	1.79
47851799--47851842	9	4.9	9	94	0	79	31	0	22	45	1.53
47855645--47855775	44	3.0	44	96	1	237	32	17	13	36	1.89
47869256--47869285	15	2.0	15	93	0	51	20	36	0	43	1.52
47869997--47870077	25	3.3	25	77	14	96	34	22	22	20	1.97
47878854--47878910	2	28.5	2	100	0	114	49	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47880458--47880750	42	6.9	42	87	4	378	33	21	21	22	1.97
47880458--47880750	86	3.5	84	86	6	378	33	21	21	22	1.97
47880458--47880750	85	3.4	85	86	5	380	33	21	21	22	1.97
47881171--47881210	12	3.3	12	92	0	53	2	37	17	42	1.63
47881195--47881263	21	3.3	21	87	0	93	2	42	20	34	1.67
47883033--47883111	39	2.0	39	87	2	113	36	5	41	16	1.70
47883066--47883116	23	2.2	24	82	10	61	37	3	39	19	1.70
47883650--47883702	22	2.5	22	96	3	99	37	26	3	32	1.74
47883663--47883739	15	5.3	14	72	7	55	40	29	1	28	1.65
47883666--47883744	29	2.7	30	82	7	92	39	29	2	29	1.70
47884290--47884821	259	2.0	261	91	5	860	28	19	19	32	1.96
47884880--47885161	113	2.5	112	81	3	287	31	17	21	29	1.96
47897357--47897439	33	2.5	34	88	3	116	43	6	4	45	1.49
47907718--47907763	17	2.7	17	89	0	74	28	30	26	15	1.96
47907753--47907797	17	2.6	17	82	0	54	33	28	17	20	1.95
47917740--47918149	205	2.0	205	100	0	820	42	18	14	24	1.88
47919725--47919872	17	8.8	18	70	16	77	33	31	18	15	1.93
47923203--47923270	34	2.0	34	100	0	136	29	20	26	23	1.99
47927718--47927833	54	2.1	54	84	3	144	22	19	31	26	1.98
47934138--47934178	18	2.2	19	87	12	59	68	7	19	4	1.32
47934194--47934242	24	2.1	24	85	11	66	67	4	16	12	1.37
47951715--47951978	43	6.2	42	71	10	153	23	20	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47951736--47951891	44	3.6	44	71	10	142	25	24	21	28	1.99
47951725--47951936	84	2.5	86	87	5	313	24	22	22	30	1.99
47973842--47973921	21	3.8	21	73	8	72	47	25	12	15	1.80
47973836--47973954	42	2.8	43	87	3	154	47	24	12	15	1.81
47979075--47979120	13	3.5	13	81	0	56	26	2	17	54	1.54
47985263--47986586	659	2.0	658	92	1	2235	34	14	15	35	1.88
47989531--47989570	20	2.0	20	95	0	71	37	20	0	42	1.52
47989804--47989994	42	4.5	42	72	7	127	38	17	18	25	1.92
47989852--47989994	43	3.4	42	72	7	128	37	16	18	26	1.92
47989845--47990006	85	1.9	85	84	5	220	38	17	19	25	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182