genome.fa.s21.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  41  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12979533--12979577	22	2.0	23	95	4	83	44	4	22	28	1.72
12983141--12983202	31	2.0	31	100	0	124	35	19	9	35	1.85
12984072--12984124	27	1.9	28	85	11	74	45	3	3	47	1.39
12987674--12987726	25	2.2	23	83	12	63	26	11	3	58	1.49
12987794--12987839	23	2.0	23	87	8	67	15	6	13	65	1.46
13000226--13000827	44	13.6	45	77	5	541	27	16	25	30	1.97
13000233--13000713	87	5.5	87	90	2	669	27	16	26	30	1.96
13000763--13000869	46	2.4	44	79	3	106	23	20	25	30	1.98
13002456--13002508	25	2.2	23	83	12	63	26	11	3	58	1.49
13002576--13002621	23	2.0	23	87	8	67	15	6	13	65	1.46
13007767--13007818	22	2.3	23	87	9	72	51	3	1	42	1.31
13009092--13009136	22	2.1	21	95	4	81	62	6	8	22	1.48
13010563--13010625	24	2.5	25	84	5	83	66	0	33	0	0.92
13010573--13010617	20	2.2	21	88	11	67	71	0	28	0	0.87
13010660--13010697	19	2.1	19	90	5	60	23	2	5	68	1.23
13010989--13011708	149	4.8	146	78	11	730	52	6	10	30	1.62
13010971--13011708	300	2.5	297	89	4	1110	52	6	10	30	1.62
13013290--13013324	12	2.9	12	86	0	52	28	42	28	0	1.56
13016737--13016823	37	2.3	38	84	11	108	52	10	4	32	1.56
13016737--13016947	39	5.4	39	68	17	114	49	12	4	33	1.61
13017165--13017213	3	16.3	3	91	0	80	0	38	0	61	0.96
13019028--13019703	87	7.8	87	93	0	1115	23	24	23	28	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13020937--13020971	13	2.6	13	90	4	52	11	20	0	68	1.20
13021351--13021390	6	6.7	6	86	11	55	15	2	12	70	1.28
13025440--13025643	108	1.9	106	90	4	329	35	20	16	27	1.93
13026474--13026531	3	19.3	3	89	0	89	62	3	0	34	1.12
13027243--13027267	13	1.9	13	100	0	50	64	8	4	24	1.38
13034042--13034071	12	2.5	12	94	0	51	26	23	40	10	1.86
13040337--13040591	125	2.0	125	99	0	501	40	14	18	27	1.89
13043291--13043334	2	22.0	2	100	0	88	0	50	0	50	1.00
13052674--13052847	30	5.7	30	84	1	222	32	8	15	44	1.76
13053017--13053085	36	1.9	35	82	8	86	27	13	26	33	1.93
13054309--13054429	62	2.0	59	80	7	136	41	2	6	49	1.42
13057398--13057662	123	2.1	125	84	4	331	29	14	16	39	1.89
13057751--13057878	33	3.8	33	77	7	141	43	12	0	42	1.48
13057753--13057885	67	2.0	65	82	7	160	42	12	0	44	1.46
13069277--13069325	16	3.1	16	90	0	80	44	4	30	20	1.70
13074955--13074980	11	2.4	11	100	0	52	53	0	7	38	1.30
13075002--13075035	17	2.0	17	100	0	68	58	0	0	41	0.98
13075035--13075060	11	2.4	11	100	0	52	53	0	7	38	1.30
13074951--13075077	39	3.2	40	80	16	165	60	0	3	35	1.15
13076330--13076369	21	1.9	21	94	0	71	32	0	12	55	1.38
13077508--13077567	30	2.0	30	93	0	102	28	13	23	35	1.92
13080588--13080639	26	2.0	26	92	0	86	23	28	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13080733--13080762	2	15.0	2	100	0	60	50	0	0	50	1.00
13087129--13087247	52	2.2	52	88	2	166	36	13	23	26	1.92
13087210--13087319	37	3.0	37	89	2	170	35	15	23	25	1.94
13091680--13091717	19	2.1	19	85	9	53	34	0	7	57	1.28
13094438--13094614	45	4.0	45	82	3	160	25	19	11	42	1.86
13101572--13101623	15	3.5	15	76	5	52	38	1	5	53	1.36
13102191--13102267	29	2.7	29	83	2	102	36	10	18	35	1.85
13103413--13103483	36	2.0	36	91	0	115	28	19	23	28	1.99
13104409--13104450	20	2.2	19	83	12	50	64	2	4	28	1.26
13113625--13113704	42	1.9	43	80	12	96	51	16	3	28	1.61
13118450--13118474	13	1.9	13	100	0	50	56	0	4	40	1.18
13118500--13118538	20	1.9	21	89	5	62	33	5	2	58	1.33
13125437--13125475	17	2.2	18	86	4	53	38	5	2	53	1.37
13135234--13135289	28	2.0	28	92	0	94	14	21	21	42	1.88
13137141--13137230	42	2.1	42	93	0	153	26	28	24	20	1.99
13143311--13143354	18	2.6	17	82	10	54	47	11	0	40	1.39
13144130--13144163	17	2.0	17	88	0	50	64	2	11	20	1.39
13144497--13144545	22	2.3	20	75	6	53	61	6	4	28	1.38
13147595--13147646	17	3.2	15	75	19	50	42	0	0	57	0.98
13147590--13147646	15	3.5	15	73	17	51	45	1	0	52	1.11
13150073--13150124	22	2.5	20	79	11	59	26	26	19	26	1.99
13150082--13150124	22	2.0	22	90	0	68	25	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13151693--13151731	12	3.2	12	81	0	51	74	2	7	15	1.15
13152232--13152276	23	2.0	23	86	0	63	60	15	6	17	1.56
13156768--13156797	7	4.3	7	95	0	51	50	0	30	20	1.49
13176138--13176180	22	1.9	23	90	4	70	18	9	32	39	1.83
13176271--13176340	18	3.9	17	80	15	70	74	0	2	22	0.95
13176271--13176334	17	3.9	17	80	15	64	73	0	3	23	0.97
13176269--13176341	19	3.7	19	76	18	69	75	0	2	21	0.93
13176269--13176343	10	6.8	11	71	17	50	74	0	2	22	0.94
13182043--13182077	17	2.1	17	100	0	70	20	22	22	34	1.97
13183441--13183483	16	2.5	18	81	11	54	58	11	16	13	1.64
13199752--13199805	25	2.2	24	87	6	81	37	18	11	31	1.86
13200598--13200841	61	4.0	61	99	0	479	18	10	29	42	1.83
13203352--13203543	50	3.7	51	78	4	172	27	20	29	22	1.99
13203794--13203832	20	2.0	20	90	10	62	56	5	23	15	1.59
13204116--13204154	20	2.0	20	90	10	62	56	5	23	15	1.59
13209165--13209203	20	2.0	20	90	10	62	15	23	5	56	1.59
13209454--13209598	49	2.9	50	82	6	195	22	28	20	28	1.98
13211548--13211679	45	3.0	45	88	2	196	33	25	16	24	1.96
13219943--13220001	29	2.0	29	96	0	109	27	20	11	40	1.87
13228568--13228656	44	2.0	44	97	0	169	46	11	15	26	1.80
13239398--13239428	16	1.9	16	100	0	62	35	6	19	38	1.77
13239605--13239643	17	2.3	17	86	8	53	23	2	5	69	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13240532--13240587	28	2.0	28	92	0	94	32	21	14	32	1.93
13241329--13241627	40	7.8	40	64	19	161	42	8	11	37	1.72
13241329--13241701	114	3.3	114	100	0	746	41	7	12	38	1.71
13241897--13241932	18	2.0	18	94	0	63	50	25	5	19	1.69
13244771--13244897	63	2.0	63	100	0	254	49	1	14	34	1.53
13244771--13244864	21	4.5	21	72	10	75	50	2	12	35	1.53
13244771--13244921	63	2.4	62	89	4	171	50	1	13	34	1.53
13245025--13245055	16	1.9	16	93	0	53	67	0	0	32	0.91
13246120--13246151	15	2.1	15	100	0	64	18	18	56	6	1.62
13246933--13246975	21	2.0	21	95	0	77	37	4	25	32	1.77
13251078--13251162	41	2.1	41	93	0	143	40	21	14	24	1.90
13252094--13252130	14	2.6	14	91	0	65	21	18	29	29	1.97
13259928--13260023	45	2.1	45	98	0	183	41	6	11	40	1.66
13259928--13259998	21	3.2	21	63	18	54	40	5	11	42	1.64
13261067--13261105	18	2.1	19	90	4	62	58	0	5	35	1.20
13266551--13266583	3	11.0	3	100	0	66	0	33	0	66	0.92
13282636--13282695	24	2.4	25	80	2	77	20	28	20	31	1.97
13282678--13282778	25	4.0	26	73	5	66	21	25	18	33	1.97
13286719--13286908	50	3.7	50	82	4	191	25	22	28	22	1.99
13293736--13293947	40	5.4	39	79	6	194	19	31	17	31	1.95
13293732--13293932	39	5.1	39	80	4	206	19	30	17	31	1.95
13295666--13295704	17	2.3	17	86	8	53	30	5	0	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13296839--13296999	81	2.0	83	85	2	218	40	10	7	40	1.68
13297627--13297671	22	2.0	22	82	0	54	31	8	24	35	1.86
13297656--13297709	23	2.3	23	93	0	90	22	1	22	53	1.55
13301776--13301820	22	2.0	22	91	0	72	28	6	28	35	1.83
13301953--13302015	6	10.5	6	100	0	126	49	15	0	34	1.45
13302015--13302077	32	2.0	32	96	0	117	38	9	17	34	1.82
13306665--13306729	32	2.0	32	96	0	121	38	12	16	32	1.86
13312141--13312174	17	2.0	17	100	0	68	17	29	41	11	1.85
13318425--13318516	46	2.0	46	89	4	141	30	18	15	35	1.92
13321329--13321390	31	2.0	30	84	3	79	58	8	6	27	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182