genome.fa.s21.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  135  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41555717--41555782	29	2.3	27	78	16	71	28	12	27	31	1.92
41557403--41557437	16	2.2	16	90	5	54	40	0	0	60	0.97
41557403--41557452	18	2.9	17	80	13	50	40	0	0	60	0.97
41557417--41557460	18	2.3	18	84	7	52	40	2	0	56	1.11
41557470--41557506	15	2.5	15	91	8	58	27	0	0	72	0.84
41557985--41558025	14	2.9	15	78	7	50	36	7	14	41	1.74
41561702--41561772	19	3.7	19	76	10	65	54	2	7	35	1.42
41566226--41566266	21	2.0	21	90	0	64	19	29	21	29	1.98
41572367--41572412	2	23.0	2	100	0	92	50	0	50	0	1.00
41582312--41582353	21	2.0	21	86	4	59	57	2	30	9	1.44
41588567--41588608	21	2.0	21	90	9	68	61	4	9	23	1.45
41591645--41591684	13	2.9	14	82	14	55	10	0	20	70	1.16
41591644--41591684	15	2.9	15	82	10	59	9	0	19	70	1.14
41601530--41601608	37	2.1	37	90	0	122	25	31	18	24	1.98
41602072--41602129	24	2.5	23	81	16	66	32	5	0	62	1.18
41612261--41612307	23	2.0	23	91	0	76	42	4	10	42	1.59
41613310--41613400	25	3.6	25	90	0	119	21	26	15	36	1.93
41613670--41613704	15	2.4	15	90	4	54	48	0	8	42	1.33
41614738--41614803	22	3.0	22	88	0	96	15	27	18	39	1.90
41614876--41614901	6	4.3	6	100	0	52	65	0	15	19	1.27
41614923--41614964	18	2.3	18	84	12	50	50	2	21	26	1.61
41615476--41615514	19	2.1	19	85	4	53	38	2	15	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41617546--41617591	22	2.1	21	81	18	51	39	8	19	32	1.82
41618050--41618144	44	2.1	44	90	1	145	41	11	21	26	1.87
41618162--41618509	50	7.0	50	87	1	484	25	21	30	22	1.98
41623546--41623597	25	2.0	26	85	3	70	17	21	36	25	1.94
41626226--41626256	15	2.1	15	93	0	53	41	0	3	54	1.16
41626879--41626907	14	2.0	15	93	6	51	27	3	0	68	1.05
41630196--41630311	61	1.9	58	81	11	137	40	5	4	50	1.44
41634104--41634234	68	1.9	68	88	0	199	35	20	23	19	1.96
41637130--41637249	44	2.7	44	94	0	222	44	20	3	32	1.68
41647439--41647601	71	2.3	71	87	4	247	26	18	26	28	1.98
41654614--41654703	39	2.3	38	79	9	92	72	1	10	16	1.17
41654987--41655032	7	6.7	7	95	5	85	0	13	0	86	0.56
41654969--41655032	13	4.8	13	84	9	85	0	10	4	84	0.76
41659740--41659797	23	2.5	23	94	0	98	22	24	15	37	1.93
41664843--41664899	24	2.3	25	80	20	66	10	5	10	73	1.23
41675177--41675653	239	2.0	239	97	0	900	41	18	16	24	1.90
41680092--41680139	23	2.2	21	82	14	53	35	2	2	60	1.20
41680114--41680270	61	2.6	58	81	8	174	40	0	4	54	1.25
41685901--41685939	20	2.0	20	85	5	53	35	0	5	58	1.20
41688087--41688182	44	2.2	44	96	0	174	29	20	7	42	1.79
41690863--41691051	43	4.4	43	89	1	299	26	31	19	22	1.97
41690863--41691051	85	2.2	86	91	0	299	26	31	19	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41691022--41691082	31	2.0	31	93	0	104	26	34	16	22	1.95
41691052--41691211	43	3.7	43	85	0	203	28	30	15	25	1.96
41690979--41691126	74	2.0	74	90	5	237	27	33	16	23	1.96
41690941--41691169	117	2.0	117	89	0	350	27	31	16	24	1.97
41690894--41691211	160	2.0	159	84	3	415	27	31	16	24	1.96
41691050--41691211	86	1.9	86	85	0	225	29	30	15	24	1.96
41694030--41694143	57	2.0	57	87	3	167	27	22	14	35	1.94
41695825--41695925	7	14.4	7	71	4	51	39	44	0	15	1.47
41695833--41695907	21	3.6	21	75	10	73	40	48	0	12	1.40
41695967--41696016	13	3.7	13	77	20	50	40	44	0	16	1.47
41696523--41696619	39	2.4	41	79	6	117	18	21	23	36	1.95
41696550--41696659	40	2.8	39	84	4	139	17	22	23	36	1.95
41696523--41696659	40	3.4	40	80	5	134	19	20	22	37	1.95
41696669--41696693	12	2.1	12	100	0	50	40	36	16	8	1.77
41697029--41697115	24	3.5	26	71	12	83	60	2	34	2	1.22
41697083--41697150	17	4.2	16	72	17	52	64	0	35	0	0.94
41697352--41697422	30	2.4	30	85	4	90	23	5	8	61	1.46
41697382--41697501	38	3.2	37	74	15	111	25	3	6	65	1.33
41697408--41697474	23	3.0	22	75	18	66	25	1	5	67	1.22
41697745--41697815	30	2.4	30	85	4	90	23	5	8	61	1.46
41697775--41697894	38	3.2	37	74	15	111	25	3	6	65	1.33
41697801--41697867	23	3.0	22	75	18	66	25	1	5	67	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41697301--41698088	393	2.0	395	96	1	1463	36	4	9	50	1.53
41698102--41698554	157	2.9	157	91	2	748	54	7	7	30	1.58
41698496--41698525	16	1.9	15	93	6	51	70	0	3	26	1.03
41699037--41699063	14	1.9	14	100	0	54	25	29	29	14	1.95
41706762--41706867	41	2.6	41	90	0	158	22	19	25	32	1.98
41708763--41708865	22	4.4	23	78	12	95	40	20	23	15	1.90
41708808--41708865	25	2.3	25	88	5	82	37	22	24	15	1.93
41709953--41710052	5	20.2	5	81	13	55	51	2	1	46	1.19
41709954--41710011	15	3.9	15	93	0	89	46	0	0	53	1.00
41712522--41712740	40	5.6	38	69	19	128	50	11	5	32	1.61
41712516--41712847	157	2.2	148	84	9	411	50	12	3	32	1.59
41712718--41712808	19	5.1	19	69	16	77	59	14	0	26	1.35
41713038--41713068	3	10.7	3	93	6	55	0	32	0	67	0.91
41713342--41713380	20	1.9	20	84	5	51	53	0	2	43	1.14
41716065--41716104	14	2.7	15	84	7	55	72	0	0	27	0.85
41716077--41716134	24	2.4	23	77	11	62	65	1	0	32	1.03
41718643--41718690	24	2.0	24	100	0	96	41	20	8	29	1.81
41721928--41721963	16	2.2	16	90	0	54	50	5	11	33	1.61
41722248--41722319	3	24.3	3	81	13	87	62	1	1	34	1.13
41738484--41738627	72	2.0	72	94	0	252	30	21	18	29	1.97
41742386--41742455	34	2.2	31	87	7	95	30	22	24	22	1.99
41745878--41745909	17	1.9	16	93	6	55	15	18	37	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41746011--41746072	30	2.0	31	87	6	90	29	6	19	45	1.75
41749781--41749817	19	1.9	19	94	0	65	62	5	0	32	1.18
41749725--41749820	25	3.9	26	75	14	78	64	3	2	30	1.20
41767081--41767156	37	2.1	36	83	11	93	56	2	1	39	1.21
41767553--41767592	19	2.1	19	85	0	53	35	2	7	55	1.42
41768746--41768777	15	2.1	15	94	0	55	68	9	6	15	1.36
41770755--41770812	26	2.2	26	84	0	71	24	24	22	29	1.99
41771075--41771138	32	2.0	32	93	0	110	21	3	28	46	1.66
41777087--41777136	23	2.2	23	88	0	73	38	10	12	40	1.76
41777440--41777509	37	1.9	35	86	11	97	55	4	0	40	1.19
41785693--41785718	13	2.0	13	100	0	52	30	15	7	46	1.74
41787249--41787347	28	3.5	28	90	4	137	27	16	27	29	1.97
41797989--41798020	15	2.1	15	94	0	55	0	6	28	65	1.16
41811603--41811631	12	2.4	12	100	0	58	27	10	27	34	1.89
41813969--41814012	22	2.0	22	86	0	61	15	18	25	40	1.90
41814177--41814381	43	4.8	42	83	1	230	28	32	15	23	1.95
41814177--41814381	86	2.4	84	81	3	257	28	32	15	23	1.95
41816043--41816096	28	1.9	28	85	7	74	31	27	11	29	1.91
41817204--41817960	252	3.0	252	99	0	1487	39	22	11	26	1.88
41819929--41819953	13	1.9	13	100	0	50	52	32	8	8	1.60
41820500--41820552	22	2.4	22	83	0	70	28	49	1	20	1.60
41821028--41821059	15	2.1	16	94	5	57	46	31	0	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41821767--41822130	41	8.9	41	91	0	532	28	27	23	20	1.99
41823041--41823084	14	2.9	15	86	10	54	68	4	0	27	1.09
41841342--41841400	23	2.6	23	91	0	91	32	18	28	20	1.96
41841319--41841410	23	3.9	23	78	15	80	31	20	26	21	1.98
41843078--41843136	23	2.6	23	91	0	91	32	18	28	20	1.96
41843055--41843146	23	3.9	23	78	15	80	31	20	26	21	1.98
41845073--41845148	35	2.2	35	88	4	109	7	10	6	75	1.20
41851950--41852010	25	2.5	25	76	12	72	34	26	19	19	1.96
41851959--41852045	25	3.5	25	79	3	95	32	24	24	19	1.98
41855981--41856031	22	2.5	20	79	17	59	80	3	9	5	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182