genome.fa.s21.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  110  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33316107--33316174	25	2.6	25	90	4	109	42	2	0	54	1.15
33317451--33317524	27	2.8	26	81	4	94	16	24	20	39	1.92
33325286--33325377	24	3.8	25	68	18	70	16	23	22	36	1.94
33331096--33331351	128	2.0	128	97	1	487	42	18	5	33	1.74
33331851--33331884	16	2.1	16	88	0	50	35	20	2	41	1.68
33332181--33332557	185	2.0	185	99	0	745	33	18	2	46	1.61
33334375--33334400	13	2.0	13	100	0	52	61	15	0	23	1.33
33339610--33339644	16	2.2	16	89	0	52	34	20	2	42	1.66
33347931--33347961	16	1.9	16	93	0	53	41	25	12	19	1.87
33352511--33352675	87	1.9	87	83	2	215	18	24	22	33	1.97
33352654--33352731	25	3.1	26	78	7	81	20	20	17	41	1.91
33352789--33352862	25	3.0	25	84	7	71	20	29	17	32	1.95
33368609--33368661	21	2.5	21	84	0	70	33	37	5	22	1.78
33372884--33372961	41	1.9	41	89	0	120	24	16	11	47	1.80
33376961--33377029	30	2.3	31	80	7	79	30	24	13	31	1.93
33384039--33384090	21	2.5	20	81	6	77	13	28	19	38	1.89
33392676--33392742	25	2.9	22	72	20	64	32	14	26	25	1.95
33392692--33392746	25	2.2	25	86	0	74	34	16	21	27	1.95
33399613--33399785	43	4.0	43	73	11	156	24	16	26	32	1.96
33400395--33400761	46	8.0	46	90	1	540	23	11	17	47	1.79
33400467--33400543	22	3.4	22	69	13	75	20	11	19	48	1.80
33400395--33400761	137	2.7	138	90	3	587	23	11	17	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33401962--33402010	20	2.7	18	77	22	57	51	4	2	42	1.32
33405938--33405962	12	2.1	12	100	0	50	76	0	0	24	0.80
33406907--33407104	97	2.0	100	91	2	321	29	8	8	53	1.61
33406911--33407068	50	3.2	48	71	12	133	28	6	9	55	1.56
33410330--33410363	17	2.1	17	88	5	52	26	32	5	35	1.81
33410533--33410563	11	2.8	11	95	0	53	9	6	6	77	1.12
33410548--33410605	22	2.6	22	80	0	62	18	8	6	65	1.43
33410637--33410698	30	2.1	30	90	0	97	27	3	12	56	1.52
33410816--33410843	11	2.5	11	100	0	56	67	0	0	32	0.91
33412986--33413047	24	2.6	22	76	14	61	19	20	3	56	1.56
33413900--33414018	51	2.3	50	81	8	125	43	3	1	51	1.28
33414082--33414119	20	2.0	20	89	5	60	26	0	10	63	1.27
33414633--33414670	19	2.0	20	89	5	60	31	2	7	57	1.41
33421265--33421345	9	9.1	9	73	15	62	40	0	3	55	1.17
33421278--33421335	20	3.1	19	82	7	66	36	0	3	60	1.14
33421795--33421835	19	2.1	20	86	4	57	29	0	7	63	1.21
33422506--33422557	24	2.1	25	89	7	79	28	13	3	53	1.57
33422506--33422581	25	3.0	24	84	5	80	25	13	5	56	1.57
33422517--33422594	25	3.1	26	78	12	74	24	11	7	56	1.61
33422746--33422792	18	2.5	19	79	10	60	65	4	0	29	1.11
33425037--33425077	19	2.1	19	86	4	55	58	0	9	31	1.31
33431610--33431648	19	2.1	18	85	4	51	76	0	20	2	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33432052--33432092	19	2.1	20	86	4	57	56	2	9	31	1.45
33433235--33433277	21	2.1	20	82	4	50	39	0	20	39	1.53
33433755--33433818	27	2.3	28	81	5	76	34	3	4	57	1.35
33433917--33433961	22	2.2	20	92	8	72	53	4	4	37	1.41
33437281--33437323	18	2.6	16	77	7	50	51	4	18	25	1.66
33439593--33439650	25	2.3	26	82	11	68	44	1	5	48	1.35
33439635--33439750	61	1.9	58	81	8	135	43	6	3	47	1.45
33444282--33444360	23	3.5	22	86	8	113	13	3	39	43	1.63
33448634--33448931	146	2.0	148	88	3	442	42	9	5	43	1.58
33449293--33449335	3	14.3	3	100	0	86	32	0	32	34	1.58
33449554--33449680	42	3.0	42	86	4	175	35	23	18	22	1.96
33450088--33450147	22	2.7	21	80	19	77	0	13	5	81	0.84
33450101--33450162	17	3.8	16	79	14	56	1	11	8	79	1.01
33450097--33450147	26	2.0	26	84	7	68	0	11	5	82	0.83
33459990--33460129	71	1.9	73	88	2	212	39	11	9	40	1.73
33470275--33470396	54	2.3	54	78	2	129	26	27	27	19	1.99
33472104--33472169	33	2.0	33	100	0	132	27	15	21	36	1.93
33479248--33479290	20	2.2	20	86	0	59	6	23	23	46	1.76
33482112--33482151	14	2.9	14	84	0	53	0	22	22	55	1.44
33482195--33482229	11	3.2	11	95	0	61	0	22	28	48	1.51
33484707--33484750	21	2.1	21	95	0	79	22	27	13	36	1.92
33489413--33489460	18	2.7	18	93	0	78	35	14	12	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33489882--33490016	72	1.9	72	90	3	218	23	6	14	55	1.62
33489877--33490049	72	2.4	75	80	10	216	26	6	12	54	1.63
33494217--33494295	37	2.1	37	90	0	122	25	31	18	24	1.98
33494414--33494824	47	8.7	47	97	0	750	29	30	8	32	1.86
33495963--33496004	18	2.3	18	100	0	84	42	19	4	33	1.72
33500768--33501072	67	4.6	67	96	0	556	41	17	22	18	1.90
33503010--33503050	21	2.0	21	85	9	57	36	2	2	58	1.24
33505475--33505662	42	4.4	42	85	5	216	25	16	24	33	1.96
33505527--33505681	85	1.8	84	83	4	204	23	16	26	32	1.96
33507858--33507971	35	3.3	35	85	2	140	35	34	3	27	1.74
33522472--33522830	41	8.6	40	80	9	396	35	25	16	21	1.94
33522470--33522789	84	3.8	84	94	0	552	37	25	16	20	1.93
33522471--33522830	168	2.2	167	90	2	564	35	25	16	21	1.94
33523995--33524282	51	5.7	50	83	4	294	28	14	26	30	1.95
33523987--33524282	102	2.9	101	85	3	382	30	14	25	30	1.95
33524054--33524282	50	4.5	50	85	3	280	29	15	25	29	1.96
33531406--33531447	21	2.0	22	85	4	59	19	16	28	35	1.93
33537033--33537074	21	2.0	21	86	9	59	11	16	35	35	1.86
33539689--33540177	241	2.0	241	98	0	942	27	15	25	31	1.95
33543390--33543652	40	6.6	39	86	4	278	25	27	21	25	1.99
33543390--33543652	120	2.2	119	82	4	307	25	27	21	25	1.99
33543584--33543661	40	1.9	41	82	10	97	26	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33551374--33551636	40	6.6	40	87	3	298	27	28	20	24	1.99
33567801--33567834	17	2.0	17	100	0	68	52	5	11	29	1.61
33580857--33581181	159	2.0	159	94	0	569	32	19	14	33	1.92
33617289--33618475	93	12.8	93	96	0	2052	27	14	18	39	1.89
33635926--33635952	12	2.2	12	100	0	54	51	7	0	40	1.30
33636399--33636496	27	3.5	28	85	2	117	26	11	28	33	1.91
33636427--33636485	28	2.1	27	93	3	82	30	10	25	33	1.89
33637019--33637159	71	2.0	71	90	2	221	23	20	23	32	1.98
33638438--33638878	23	19.0	23	72	12	292	26	13	19	40	1.88
33638435--33638867	93	4.6	93	92	0	713	27	13	18	40	1.89
33645485--33645693	43	4.9	43	80	6	212	30	27	17	24	1.97
33650790--33650824	6	5.8	6	89	0	52	28	0	2	68	1.04
33650792--33650831	18	2.2	19	90	4	64	25	0	5	70	1.08
33659497--33659808	154	2.0	154	91	1	500	35	8	13	42	1.75
33661324--33661369	24	1.9	24	86	8	67	26	6	17	50	1.70
33665744--33665816	31	2.4	31	79	6	78	42	9	1	46	1.45
33670849--33670887	12	3.2	12	85	0	51	20	23	5	51	1.67
33671135--33671276	49	2.9	49	81	2	169	23	28	20	26	1.99
33671611--33671669	30	2.0	30	86	0	82	32	23	8	35	1.85
33676003--33676196	48	4.0	48	81	2	237	27	21	28	22	1.99
33684748--33684772	10	2.5	10	100	0	50	8	52	8	32	1.60
33692614--33692692	41	1.9	41	89	0	122	21	30	13	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33701007--33701633	315	2.0	315	100	0	1254	33	16	22	27	1.95
33702253--33702569	30	10.6	30	76	7	252	35	12	24	26	1.92
33702283--33702543	90	2.9	89	80	7	278	35	12	25	26	1.91
33702433--33702513	29	2.7	30	84	3	119	37	13	25	23	1.92
33702248--33702577	119	2.8	117	84	5	405	35	12	25	26	1.91
33708144--33708208	22	2.9	22	90	2	94	33	33	4	27	1.78
33708514--33708574	10	6.0	10	79	12	63	77	0	8	14	0.99
33708511--33708571	22	2.8	22	90	2	88	78	0	8	13	0.95
33708511--33708563	11	4.8	11	90	0	88	77	0	7	15	0.98
33710796--33710883	19	4.5	19	72	21	74	76	2	15	5	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182