genome.fa.s21.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  130  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39935607--39935673	33	2.0	33	94	0	116	41	17	17	22	1.90
39936983--39937049	28	2.4	27	78	11	64	49	10	10	29	1.70
39944955--39945123	44	3.8	45	73	3	128	43	11	21	23	1.84
39970272--39970300	4	7.2	4	100	0	58	51	24	0	24	1.48
39970298--39970326	4	7.2	4	100	0	58	75	24	0	0	0.80
39971989--39972026	17	2.2	17	100	0	76	47	31	10	10	1.72
39980531--39980569	19	2.1	19	85	9	53	41	0	28	30	1.57
39981747--39981837	27	3.4	27	82	0	119	31	15	28	24	1.95
39984007--39984031	13	1.9	13	100	0	50	32	0	8	60	1.26
39984236--39984276	20	2.0	20	100	0	82	19	19	24	36	1.95
39990424--39990474	26	2.2	24	78	21	56	60	5	0	33	1.21
39993112--39993155	15	2.8	15	86	6	52	65	2	2	29	1.16
39994915--39994951	9	4.1	9	85	0	56	29	8	13	48	1.71
39995004--39995034	9	3.4	9	90	0	53	38	22	12	25	1.90
39999321--39999351	11	2.7	12	95	5	55	83	0	9	6	0.79
40015600--40015777	27	6.6	26	79	7	142	26	15	27	30	1.96
40015600--40015777	54	3.3	54	76	10	166	26	15	27	30	1.96
40015628--40015777	55	2.8	54	83	4	167	27	15	28	28	1.96
40015601--40015756	82	1.9	81	84	6	208	26	16	27	30	1.96
40015597--40015777	82	2.2	81	80	4	204	26	16	27	30	1.96
40015682--40015788	27	3.9	27	85	1	70	26	14	28	30	1.95
40027358--40027416	30	1.9	31	82	3	75	45	5	20	28	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40027888--40028057	51	3.4	50	76	8	173	28	15	25	30	1.96
40035472--40035659	51	3.7	51	85	3	229	25	17	27	29	1.97
40035472--40035659	101	1.9	102	85	3	263	25	17	27	29	1.97
40041895--40041942	23	2.1	23	96	0	87	39	18	22	18	1.92
40050244--40050467	120	1.9	120	94	1	396	38	25	20	15	1.92
40068296--40068325	13	2.3	13	94	0	51	56	6	6	30	1.51
40070175--40070469	37	8.0	37	77	9	155	36	16	22	24	1.94
40070172--40070796	35	17.4	35	74	10	455	37	15	21	24	1.93
40070172--40070796	73	8.7	72	74	11	376	37	15	21	24	1.93
40070172--40070518	110	3.1	109	81	7	353	37	15	22	24	1.93
40070265--40070796	102	5.0	105	75	10	298	37	15	21	25	1.92
40070269--40070796	110	4.9	107	78	9	294	38	15	21	25	1.92
40070974--40071115	75	1.9	75	91	0	230	39	19	11	28	1.88
40079300--40079344	20	2.2	20	100	0	90	31	20	8	40	1.83
40082372--40082503	40	3.3	40	88	2	185	28	28	19	22	1.98
40082488--40082565	40	1.9	41	82	10	97	26	28	20	24	1.99
40083661--40083697	12	3.2	12	81	11	51	8	16	2	72	1.19
40087409--40087472	27	2.3	28	94	5	121	35	21	15	26	1.94
40096410--40096849	39	11.3	39	81	0	457	32	17	32	17	1.93
40096757--40096819	20	3.2	20	78	13	76	33	17	31	17	1.93
40099498--40099581	25	3.4	25	73	17	84	32	27	19	21	1.97
40116996--40117081	33	2.6	33	100	0	172	36	25	20	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40116924--40117151	109	2.2	103	87	6	314	32	26	19	21	1.97
40117029--40117233	70	2.8	73	86	9	283	32	27	19	21	1.97
40119162--40119201	20	2.0	20	95	0	71	45	12	10	32	1.75
40119253--40119292	22	1.9	20	85	10	53	30	12	20	37	1.89
40120424--40120504	43	2.0	40	85	7	108	46	2	24	25	1.65
40122217--40122267	19	2.7	19	84	0	66	27	3	33	35	1.75
40129534--40129594	24	2.7	22	75	9	61	29	0	6	63	1.19
40131431--40131494	21	3.0	21	81	9	76	57	3	1	37	1.24
40131644--40131673	15	2.0	15	93	0	51	56	0	0	43	0.99
40131819--40131848	15	2.1	15	93	6	53	56	0	0	43	0.99
40132243--40132285	12	3.5	11	84	15	50	25	0	4	69	1.07
40132609--40132634	2	13.0	2	100	0	52	0	50	0	50	1.00
40138501--40138547	3	15.7	3	100	0	94	68	0	0	31	0.90
40139888--40139925	17	2.2	17	100	0	76	60	0	10	28	1.30
40140673--40141097	31	13.8	31	78	8	413	32	5	17	45	1.70
40140671--40141173	92	5.5	92	87	0	641	32	5	17	44	1.72
40140667--40141173	184	2.8	184	88	1	721	31	5	17	44	1.72
40147320--40147403	27	3.1	26	80	10	71	34	7	28	29	1.84
40148941--40149224	51	5.6	51	78	6	299	28	15	26	28	1.96
40148941--40149179	101	2.4	102	94	1	426	28	14	27	29	1.95
40148941--40149223	101	2.8	101	89	2	415	28	15	26	28	1.96
40148948--40149266	152	2.1	150	78	9	335	30	14	26	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40155944--40156032	44	2.0	44	100	0	178	38	11	15	34	1.83
40160683--40160763	30	2.7	30	81	7	110	27	20	9	41	1.84
40160743--40160936	30	6.5	31	77	8	145	24	24	12	38	1.90
40160773--40160959	60	3.2	59	79	8	191	24	24	13	37	1.92
40162803--40162846	22	2.0	22	82	8	54	29	0	27	43	1.55
40174514--40174675	37	4.4	37	81	7	204	19	12	26	41	1.87
40175153--40175338	37	5.1	37	82	5	225	18	13	27	40	1.88
40175153--40175338	74	2.5	73	83	4	257	18	13	27	40	1.88
40174493--40175711	639	1.9	639	90	2	1948	26	13	20	40	1.89
40180136--40180198	33	1.9	33	93	0	108	19	17	26	36	1.94
40185679--40185704	10	2.6	10	100	0	52	61	0	0	38	0.96
40185673--40185750	38	2.1	38	83	7	97	56	1	1	41	1.15
40185764--40185821	10	5.6	11	76	12	61	60	1	1	36	1.17
40185766--40185821	20	2.8	19	82	15	69	58	1	1	37	1.19
40186023--40186065	7	5.6	7	84	13	50	18	2	2	76	1.00
40186325--40186509	28	6.5	28	69	18	89	34	3	3	59	1.30
40186402--40186489	10	9.4	10	69	18	64	29	1	3	65	1.16
40186457--40186549	19	5.0	19	72	22	74	38	1	3	56	1.22
40186326--40186513	19	9.9	19	69	15	77	35	3	3	58	1.30
40186460--40186550	9	9.9	9	72	23	57	39	1	2	57	1.18
40189337--40189379	10	4.1	10	80	11	50	30	2	0	67	1.03
40189308--40189375	11	5.5	12	70	22	52	36	2	0	60	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40189308--40189429	39	3.0	40	84	10	133	36	4	0	57	1.26
40189347--40189402	29	1.9	29	82	7	69	35	5	0	58	1.21
40190921--40190961	22	1.9	21	95	5	73	19	14	34	31	1.92
40193373--40193439	26	2.6	26	82	0	80	32	23	22	20	1.98
40198240--40198273	18	2.0	17	88	11	52	17	8	0	73	1.08
40198747--40198827	21	4.2	20	73	19	73	72	0	22	4	1.03
40198726--40198809	9	9.4	9	72	24	56	71	2	22	3	1.13
40198766--40198831	6	11.0	6	77	6	55	75	0	21	3	0.93
40198759--40198812	15	3.6	15	97	0	99	77	0	22	0	0.76
40198798--40198832	18	1.9	18	100	0	70	68	0	22	8	1.16
40198750--40198853	30	3.6	30	71	16	76	70	0	21	7	1.18
40198799--40198841	18	2.4	18	92	0	68	72	2	18	6	1.19
40203035--40203090	6	9.2	6	82	9	60	16	23	0	60	1.35
40203035--40203090	18	3.1	18	84	7	69	16	23	0	60	1.35
40207947--40208096	25	6.3	25	80	9	170	19	25	16	38	1.92
40208076--40208144	22	3.1	22	81	8	86	21	23	13	42	1.88
40209404--40209544	47	3.0	47	84	5	187	24	14	27	33	1.95
40211173--40211485	156	2.0	156	100	0	626	38	10	19	31	1.86
40217586--40217670	27	3.1	27	84	1	107	40	8	25	25	1.83
40220602--40220827	42	5.4	42	74	12	153	36	23	16	23	1.94
40220594--40220830	84	2.8	85	85	3	318	35	23	17	23	1.95
40220806--40220856	26	2.0	26	84	0	66	27	33	21	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40227183--40227230	18	2.7	17	75	18	53	72	10	6	10	1.26
40238967--40239045	26	3.0	26	100	0	158	30	3	11	54	1.54
40258809--40258834	9	2.9	9	100	0	52	76	0	0	23	0.78
40259173--40259299	43	2.8	45	79	7	141	47	13	7	32	1.70
40259200--40259288	43	2.1	43	93	0	151	46	11	8	33	1.71
40262376--40262458	41	2.0	41	95	0	148	39	19	7	33	1.79
40265233--40265352	59	2.0	60	95	1	215	17	18	23	40	1.91
40269479--40269529	6	8.5	6	86	0	57	58	3	23	13	1.52
40270413--40270451	17	2.2	18	81	9	53	30	28	15	25	1.96
40288193--40288237	21	2.2	20	84	4	54	28	8	17	44	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182