genome.fa.s21.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  124  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38102400--38102460	27	2.3	26	83	10	79	34	19	22	22	1.97
38115705--38115826	23	5.3	23	90	2	192	23	21	25	29	1.99
38119584--38119737	27	5.8	26	78	9	136	25	22	12	39	1.89
38119598--38119737	53	2.6	54	83	7	173	24	21	12	42	1.87
38119616--38119737	26	4.6	26	84	2	111	27	21	12	39	1.89
38121162--38121276	42	2.7	43	77	16	109	17	20	19	42	1.89
38122457--38122506	26	1.9	26	87	0	73	30	22	10	38	1.86
38123939--38123998	31	1.9	31	82	0	75	25	18	18	38	1.93
38124039--38124092	27	2.0	27	88	0	81	33	24	11	31	1.90
38124040--38124105	27	2.4	27	85	5	80	34	24	12	28	1.91
38125560--38125699	53	2.6	53	80	6	131	26	25	12	35	1.92
38125566--38125758	27	7.2	27	82	3	176	25	23	13	37	1.91
38131837--38131951	55	2.1	55	98	0	221	34	13	20	32	1.90
38137082--38137106	11	2.3	11	100	0	50	16	0	8	76	1.02
38137815--38137958	50	2.7	52	78	6	148	25	18	31	25	1.98
38137927--38138047	50	2.4	49	77	6	129	32	19	24	23	1.98
38137927--38138056	49	2.6	49	78	6	138	30	20	25	23	1.98
38138258--38138296	20	2.0	20	90	10	62	56	5	23	15	1.59
38140990--38141074	27	3.1	27	84	0	107	24	27	17	30	1.97
38141002--38141089	27	3.3	27	85	0	122	23	23	14	37	1.92
38143532--38143575	23	1.9	23	86	9	63	45	27	13	13	1.81
38145379--38145410	16	2.0	16	93	0	55	46	6	21	25	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38149216--38149250	19	1.9	17	88	11	52	74	0	5	20	1.02
38154972--38155032	31	2.0	31	90	0	95	32	19	24	22	1.97
38155209--38155278	34	2.1	34	100	0	140	41	2	20	35	1.67
38156941--38156975	18	1.9	18	94	0	61	31	17	2	48	1.61
38159361--38159580	27	8.1	27	80	5	196	37	19	22	21	1.95
38159361--38159580	81	2.7	81	81	6	243	37	19	22	21	1.95
38159733--38159839	26	4.1	26	87	0	142	20	18	22	38	1.94
38159921--38160009	28	3.2	28	95	0	160	21	24	24	29	1.99
38159921--38160047	56	2.2	60	87	7	181	21	24	25	29	1.99
38159925--38160042	28	3.9	32	76	18	128	21	24	25	28	1.99
38161783--38161846	28	2.3	26	78	17	67	26	23	18	31	1.98
38161819--38161950	29	4.6	29	83	3	140	37	19	15	27	1.93
38161877--38161970	29	3.2	29	84	3	82	41	15	15	26	1.88
38166292--38166377	45	1.9	45	95	0	154	32	25	16	25	1.96
38166700--38166780	30	2.7	30	94	0	135	35	22	6	35	1.79
38169301--38169337	10	3.8	10	83	16	51	0	18	0	81	0.70
38169289--38169339	20	2.5	20	75	12	59	5	17	0	76	0.98
38169304--38169336	12	2.8	12	90	9	50	0	15	0	84	0.61
38169304--38169344	17	2.4	17	88	12	57	2	14	0	82	0.76
38169292--38169345	20	2.7	19	75	8	54	5	14	0	79	0.90
38189099--38189131	17	1.9	17	93	0	57	42	0	18	39	1.50
38191305--38191549	51	4.9	50	74	6	208	31	25	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38191301--38191545	101	2.4	101	83	2	296	31	24	16	27	1.97
38191664--38191692	11	2.6	11	100	0	58	6	17	0	75	1.01
38191656--38191696	20	2.1	19	86	9	55	7	19	0	73	1.07
38193783--38193855	36	2.0	36	100	0	146	35	13	10	39	1.80
38196137--38196279	43	3.4	43	82	5	166	30	30	17	21	1.96
38200419--38200464	19	2.4	19	85	0	56	19	2	2	76	1.00
38201178--38201220	22	2.0	22	85	0	59	32	39	2	25	1.69
38201187--38201232	22	2.1	21	84	4	56	34	36	2	26	1.69
38200758--38201351	301	2.0	292	84	7	766	41	27	2	28	1.69
38201507--38201874	41	9.0	41	85	1	468	33	27	20	18	1.96
38201922--38202045	40	3.2	38	71	10	106	22	17	20	39	1.92
38203138--38203382	51	4.9	50	76	6	217	31	25	16	26	1.96
38203132--38203376	101	2.4	100	83	2	303	30	25	16	27	1.97
38203132--38203412	101	2.8	98	77	6	260	30	26	14	27	1.95
38214582--38214626	23	1.9	24	86	13	67	22	4	2	71	1.15
38237721--38237797	25	3.1	25	84	3	93	35	18	28	18	1.94
38240889--38240925	17	2.1	19	85	10	51	40	24	5	29	1.77
38244583--38244626	18	2.4	19	78	17	56	45	13	2	38	1.56
38246734--38246770	18	2.1	18	100	0	74	43	0	0	56	0.99
38248022--38248082	32	1.9	32	93	0	104	49	18	4	27	1.68
38248022--38248095	32	2.5	30	82	10	91	50	18	4	27	1.65
38248247--38248336	45	2.0	45	95	0	162	23	24	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38253371--38253400	16	1.9	15	93	6	51	60	0	0	40	0.97
38253458--38253508	24	2.1	25	88	3	77	49	5	11	33	1.64
38255145--38255201	29	2.0	28	89	3	87	42	3	0	54	1.17
38257575--38257625	20	2.5	21	81	12	61	39	0	1	58	1.09
38258942--38258990	22	2.2	22	77	0	53	63	10	8	18	1.50
38267237--38267287	20	2.5	21	81	12	61	39	0	1	58	1.09
38268575--38268623	22	2.2	22	77	0	53	63	10	8	18	1.50
38277572--38277623	24	2.2	24	89	0	77	36	3	9	50	1.54
38277972--38278024	25	2.2	24	87	12	74	13	16	20	49	1.79
38290556--38290613	21	2.7	21	78	2	71	56	0	1	41	1.09
38290555--38290648	11	8.9	11	69	22	60	58	0	2	39	1.10
38290568--38290678	40	2.8	40	93	4	181	60	0	2	36	1.11
38290629--38290686	30	2.0	27	90	9	89	62	0	1	36	1.06
38293861--38293921	30	2.0	30	100	0	122	36	13	22	27	1.92
38298346--38298388	17	2.4	18	88	7	61	20	2	11	65	1.36
38312295--38312367	27	2.7	27	91	0	110	24	26	12	36	1.91
38313663--38313726	28	2.4	27	84	5	76	62	3	0	34	1.11
38318112--38318213	25	4.1	25	81	0	132	19	22	20	37	1.95
38318124--38318236	50	2.3	50	78	3	120	22	22	20	35	1.96
38340862--38340895	13	2.8	12	86	8	50	29	29	5	35	1.81
38342511--38342565	23	2.4	24	81	6	60	50	0	1	47	1.11
38346177--38346400	53	4.2	53	89	4	312	36	21	14	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38348902--38349113	45	4.8	44	78	8	189	36	14	17	31	1.89
38348886--38349174	89	3.3	88	81	6	291	35	15	17	31	1.91
38348886--38349173	44	6.5	44	78	3	166	35	15	17	31	1.91
38350557--38350606	27	1.9	27	84	8	68	24	24	16	36	1.94
38350532--38350673	25	5.7	24	69	19	69	19	24	19	36	1.95
38350664--38350762	25	4.0	25	84	5	94	25	26	18	30	1.98
38353603--38353642	16	2.5	16	87	0	53	22	10	2	65	1.35
38353939--38353974	18	1.9	19	88	5	56	19	0	2	77	0.88
38354249--38354293	20	2.2	20	84	7	56	40	4	4	51	1.42
38355190--38355219	2	15.5	2	93	6	53	50	0	0	50	1.00
38356599--38356640	20	2.0	20	82	17	50	59	2	0	38	1.10
38356620--38356654	16	2.1	17	89	5	54	65	0	0	34	0.93
38356738--38356866	48	2.6	48	77	12	138	56	3	6	34	1.40
38356779--38356855	38	2.1	38	82	7	95	53	1	7	37	1.38
38356750--38357008	10	27.4	9	66	19	68	59	2	5	32	1.33
38356846--38356895	18	2.8	17	78	6	55	74	0	4	22	0.99
38356918--38356959	9	4.4	9	78	21	50	57	0	2	40	1.12
38357529--38357632	39	2.8	36	75	16	95	34	6	1	56	1.37
38357542--38357600	30	2.0	29	83	9	75	38	1	1	57	1.19
38359316--38359358	19	2.4	17	78	17	50	65	6	4	23	1.37
38359325--38359368	10	4.7	9	81	10	52	63	4	2	29	1.26
38368765--38368942	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38368766--38368921	82	1.9	81	88	3	233	26	15	28	29	1.96
38368762--38368942	82	2.2	81	83	2	229	27	15	27	29	1.96
38376828--38377005	27	6.6	27	83	3	205	26	15	28	29	1.96
38376829--38376984	82	1.9	81	88	3	233	26	15	28	29	1.96
38376825--38377005	82	2.2	81	83	2	229	27	15	27	29	1.96
38382000--38382078	42	1.9	41	84	2	104	27	11	24	36	1.90
38383536--38383572	17	2.1	19	85	10	51	67	5	2	24	1.25
38386453--38386485	16	1.9	18	88	11	52	57	0	0	42	0.98
38386453--38386485	9	3.9	9	88	11	52	57	0	0	42	0.98
38390581--38390606	6	4.3	6	100	0	52	15	0	0	84	0.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182