genome.fa.s21.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  14  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4792835--4792979	61	2.3	60	85	8	177	26	26	20	26	1.99
4793000--4793055	20	2.8	20	83	2	69	33	23	16	26	1.95
4798423--4798460	18	2.1	18	85	9	51	57	2	39	0	1.12
4799563--4799611	21	2.3	21	89	0	71	8	22	32	36	1.84
4800263--4800397	40	3.2	43	84	4	161	42	20	8	27	1.82
4802033--4802063	15	2.0	16	93	6	55	32	38	6	22	1.80
4802352--4802387	16	2.2	16	100	0	72	50	16	19	13	1.79
4802359--4802757	64	6.3	64	89	1	599	46	15	13	24	1.83
4802359--4802757	126	3.2	126	95	0	681	46	15	13	24	1.83
4802361--4802757	190	2.1	188	88	1	587	46	15	13	24	1.83
4802629--4802730	32	3.1	34	62	25	83	45	14	16	23	1.85
4802675--4802711	16	2.3	16	90	0	56	51	21	13	13	1.75
4807128--4807160	16	2.0	17	88	5	50	9	6	15	69	1.34
4809882--4810072	35	5.2	35	63	12	103	27	21	19	30	1.98
4809870--4810180	75	4.1	75	92	0	469	27	21	19	31	1.97
4809904--4810179	40	7.3	40	64	14	145	28	20	18	31	1.96
4810100--4810211	35	3.1	35	70	16	109	28	17	21	32	1.96
4809870--4810242	150	2.5	150	85	0	406	27	20	19	31	1.97
4809898--4810242	75	4.6	75	91	0	339	27	20	19	32	1.97
4817433--4817621	75	2.5	74	86	3	236	26	19	19	34	1.96
4817435--4817643	75	2.8	75	83	5	235	25	20	20	33	1.97
4819302--4819346	23	2.0	23	95	0	81	22	26	13	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4820914--4821091	55	3.2	55	83	0	221	32	23	14	29	1.94
4825869--4825958	45	2.0	45	93	0	153	28	18	8	43	1.80
4834616--4834870	39	6.5	39	84	1	341	45	19	3	31	1.67
4840123--4840158	19	2.0	18	89	10	56	25	19	38	16	1.92
4857641--4857824	67	2.8	64	81	10	196	22	30	16	29	1.96
4858559--4858619	30	2.0	30	83	0	77	31	22	8	37	1.84
4865046--4865210	75	2.2	76	86	5	235	55	10	16	16	1.68
4893503--4893665	42	3.9	42	75	12	147	28	24	16	30	1.97
4897589--4897620	14	2.3	14	100	0	64	37	21	18	21	1.94
4902065--4902249	40	4.7	40	80	6	207	24	27	23	24	2.00
4902067--4902249	79	2.3	81	81	7	205	24	27	23	25	2.00
4903378--4903497	56	2.1	56	98	0	231	22	23	9	45	1.81
4908695--4908725	15	2.1	15	93	0	53	25	16	22	35	1.94
4908928--4909019	48	1.9	48	88	4	141	33	4	21	40	1.73
4924097--4924194	40	2.5	40	91	0	169	30	25	15	28	1.96
4929475--4929914	111	4.0	111	98	0	835	17	30	26	25	1.97
4930606--4930778	50	3.7	46	81	10	174	22	29	18	29	1.97
4933520--4933661	55	2.6	55	88	0	212	15	27	30	26	1.96
4934628--4934721	40	2.3	40	92	0	152	29	24	18	27	1.98
4937609--4938560	109	8.7	109	99	0	1843	36	16	24	22	1.94
4946802--4946859	30	2.1	30	81	12	70	1	25	3	68	1.14
4946808--4946860	22	2.4	23	75	15	58	1	22	3	71	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4946863--4946887	8	3.1	8	100	0	50	48	0	0	52	1.00
4949449--4949626	27	6.6	27	79	5	153	29	28	15	26	1.96
4949449--4949625	54	3.3	53	79	9	178	29	28	15	25	1.96
4957780--4957961	40	4.6	39	81	8	190	25	21	28	24	1.99
4957832--4957996	79	2.1	79	81	2	188	26	21	28	24	1.99
4958987--4959214	114	2.0	114	100	0	456	29	21	22	25	1.99
4965811--4966873	40	26.6	40	97	0	1925	24	20	27	27	1.99
4977205--4977312	40	2.7	40	81	4	128	12	30	20	37	1.89
4977206--4977312	20	5.3	20	70	5	90	11	30	20	37	1.88
4980737--4980772	18	2.1	18	89	5	56	36	16	5	41	1.72
4987645--4987723	35	2.3	34	82	8	88	62	5	1	31	1.25
4996205--4996253	24	2.1	23	81	11	55	46	12	18	22	1.82
5010854--5010924	26	2.8	25	80	6	79	40	9	18	30	1.83
5011728--5011792	24	2.8	23	68	25	55	50	7	1	40	1.40
5013409--5013440	5	6.4	5	100	0	64	37	0	21	40	1.54
5015776--5015840	24	2.8	23	68	25	55	50	7	1	40	1.40
5017457--5017488	5	6.4	5	100	0	64	37	0	21	40	1.54
5020633--5021046	211	2.0	211	98	0	801	33	13	16	36	1.88
5036567--5036625	16	3.8	16	84	6	68	33	23	3	38	1.72
5036585--5036627	15	2.8	15	85	3	59	30	25	4	39	1.76
5040904--5040935	6	5.3	6	100	0	64	65	0	34	0	0.93
5048289--5048808	259	2.0	259	100	0	1040	41	15	11	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5049655--5049842	51	3.7	51	79	4	175	34	27	13	25	1.93
5049647--5049840	102	1.9	102	85	4	266	33	27	13	25	1.94
5053556--5053611	26	2.2	26	90	0	85	17	23	19	39	1.92
5053662--5053721	25	2.4	25	91	5	95	23	28	20	28	1.99
5059997--5060670	337	2.0	337	100	0	1348	27	19	25	28	1.99
5064262--5064306	6	8.2	6	76	18	53	82	0	17	0	0.68
5064261--5064304	10	4.3	10	88	5	61	84	0	15	0	0.63
5064269--5064306	16	2.4	16	95	0	67	84	0	15	0	0.63
5064574--5064644	35	2.0	35	100	0	142	25	14	32	28	1.94
5065618--5065764	45	3.3	45	68	3	127	27	17	27	27	1.98
5065601--5065772	88	2.0	88	89	0	263	27	19	25	27	1.99
5065802--5066614	267	3.0	266	90	1	1261	27	20	25	26	1.99
5066621--5066858	44	5.5	45	74	9	217	31	21	18	28	1.97
5066623--5066910	128	2.2	129	88	3	429	30	21	19	28	1.97
5068473--5068529	27	2.2	26	84	9	71	33	3	5	57	1.38
5068584--5068643	29	2.2	29	82	11	74	36	1	5	56	1.31
5068892--5068948	27	2.2	26	84	9	71	33	3	5	57	1.38
5069003--5069062	29	2.2	29	82	11	74	36	1	5	56	1.31
5068433--5069273	419	2.0	419	100	0	1682	32	6	5	56	1.47
5070333--5070369	19	1.9	19	88	0	56	64	2	2	29	1.21
5073649--5073843	98	2.0	98	93	0	336	36	25	10	27	1.89
5075336--5075448	19	5.8	19	85	4	163	35	15	9	39	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5075336--5075447	40	2.8	40	91	2	183	35	14	9	40	1.79
5075329--5075448	59	2.1	56	86	6	161	35	15	9	40	1.79
5075644--5076085	217	2.0	217	91	0	715	27	23	19	29	1.98
5075644--5076063	44	9.7	42	71	13	273	28	23	19	29	1.98
5076082--5076953	132	6.6	132	94	0	1449	23	23	20	31	1.98
5078166--5078209	6	7.0	6	82	10	52	2	20	0	77	0.88
5078166--5078221	20	2.9	19	84	7	69	1	19	0	78	0.84
5078173--5078220	12	3.8	12	84	13	53	0	20	0	79	0.74
5080979--5081285	152	2.0	152	100	0	614	33	23	14	28	1.94
5082461--5082648	98	1.9	98	94	0	331	37	24	11	26	1.89
5083323--5083372	25	2.0	26	84	4	66	54	4	8	34	1.49
5084140--5084252	19	5.8	19	83	4	154	36	15	8	39	1.78
5084133--5084252	59	2.1	56	87	6	170	36	15	8	40	1.77
5084140--5084251	40	2.8	40	90	2	174	36	14	8	40	1.77
5086072--5086097	11	2.4	11	100	0	52	15	0	0	84	0.62
5090051--5090235	40	4.7	40	81	5	178	27	28	20	24	1.99
5090018--5090235	40	5.5	39	77	7	165	25	27	20	25	1.99
5100298--5100466	27	6.2	27	84	4	196	30	26	15	27	1.96
5100310--5100465	82	1.9	81	88	3	233	29	28	15	26	1.96
5103892--5103956	29	2.3	29	91	2	105	35	24	21	18	1.96
5103892--5103966	29	2.6	29	77	12	82	33	25	20	21	1.97
5110566--5110859	50	5.9	50	83	0	311	22	28	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5110574--5110845	150	1.8	149	82	2	348	21	28	20	29	1.98
5133321--5133389	29	2.4	28	76	9	68	31	20	18	28	1.96
5133279--5133389	57	1.9	58	88	1	170	28	22	19	28	1.98
5133310--5133391	28	2.9	28	73	8	85	29	20	19	30	1.97
5133598--5133748	53	2.8	53	82	2	187	28	22	13	35	1.92
5140065--5140532	29	16.1	29	75	8	317	23	25	13	37	1.92
5140065--5140523	58	7.9	58	74	5	399	23	25	13	37	1.92
5140065--5140523	87	5.3	87	82	2	413	23	25	13	37	1.92
5145715--5145761	24	2.0	23	87	4	67	42	2	29	25	1.67
5145909--5145976	27	2.5	27	95	0	118	39	8	0	51	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182