genome.fa.s21.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  123  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37848767--37848793	12	2.2	12	100	0	54	29	33	22	14	1.94
37849869--37849895	13	2.1	13	100	0	54	37	29	25	7	1.83
37856160--37856191	13	2.6	13	90	9	50	43	12	9	34	1.75
37863256--37863305	26	1.9	26	91	0	82	22	22	30	26	1.99
37863323--37863763	84	5.2	84	96	0	792	20	16	27	36	1.93
37864478--37864513	18	2.0	18	100	0	72	44	5	16	33	1.71
37883382--37883438	27	2.1	27	90	3	89	19	17	15	47	1.83
37883815--37883849	16	2.2	16	89	0	52	14	20	20	45	1.85
37888436--37888587	50	3.1	48	86	5	157	25	13	22	38	1.91
37888456--37888587	50	2.6	50	90	0	192	26	12	21	38	1.90
37888455--37888594	25	5.6	25	76	3	129	26	12	23	37	1.91
37890588--37890704	20	5.8	20	72	9	87	35	17	23	23	1.96
37890602--37890704	40	2.6	40	86	6	138	32	18	25	24	1.97
37893944--37894017	8	8.6	8	84	12	94	62	9	5	22	1.46
37893941--37894027	28	3.2	27	80	15	108	58	9	10	21	1.59
37895442--37895644	46	4.5	45	82	4	196	22	22	14	40	1.90
37895442--37895649	91	2.3	91	82	7	244	22	23	13	40	1.89
37895614--37895879	90	2.9	90	85	0	361	24	21	15	38	1.92
37895625--37895871	45	5.5	45	84	0	323	24	21	14	38	1.92
37895614--37895871	135	1.9	135	87	3	376	25	21	15	38	1.92
37901114--37901150	18	2.1	18	89	0	56	27	27	0	45	1.54
37901517--37901553	3	12.7	3	94	5	67	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37905108--37905152	21	2.1	21	83	4	54	37	13	11	37	1.80
37907505--37907580	38	2.0	38	97	2	145	38	13	15	32	1.86
37910953--37911011	31	1.9	31	82	3	75	37	13	10	38	1.79
37910967--37911032	31	2.1	31	86	5	89	33	13	9	43	1.76
37912707--37912992	42	6.8	41	80	9	310	31	22	20	26	1.98
37912707--37913105	85	4.7	84	78	10	341	31	22	18	27	1.97
37912707--37913060	127	2.8	125	87	5	482	29	22	20	27	1.98
37912752--37913058	43	7.2	43	77	13	269	28	23	20	27	1.99
37913493--37913558	21	3.1	21	91	0	96	4	43	18	33	1.70
37916906--37916960	23	2.3	23	81	9	67	50	3	3	41	1.37
37920866--37920937	8	9.8	8	75	14	57	37	45	0	16	1.48
37920884--37920962	7	11.1	7	74	12	54	37	41	1	18	1.59
37920884--37920941	14	4.1	14	82	8	73	39	43	0	17	1.49
37920879--37920970	22	4.3	21	72	6	69	35	42	1	20	1.60
37920871--37920941	29	2.5	28	86	2	88	38	45	0	16	1.48
37921102--37921159	28	2.1	28	90	0	89	32	48	1	17	1.57
37921110--37921159	13	3.7	13	79	10	55	32	48	2	18	1.59
37921836--37922123	114	2.5	115	82	5	336	31	23	17	27	1.97
37923697--37923834	74	1.9	72	87	3	204	44	7	7	41	1.60
37930609--37930642	17	2.0	17	88	0	50	29	11	23	35	1.90
37933813--37933846	15	2.3	15	100	0	68	35	26	26	11	1.91
37933995--37934040	23	2.0	23	86	0	65	45	21	8	23	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37937246--37937417	84	2.0	84	95	0	308	32	19	14	33	1.92
37942720--37942763	21	2.2	20	83	4	52	31	0	6	61	1.22
37943606--37943685	20	4.0	20	76	0	88	11	31	21	36	1.88
37945993--37946022	12	2.4	12	94	5	51	6	16	3	73	1.18
37948090--37948123	15	2.3	15	100	0	68	23	11	14	50	1.76
37948737--37948820	39	2.2	39	80	0	96	30	22	29	16	1.96
37951763--37951818	21	2.7	21	85	0	76	28	10	33	26	1.90
37960653--37960710	31	1.9	29	82	6	71	51	12	5	31	1.61
37962816--37962893	39	2.0	39	89	0	120	39	0	6	53	1.26
37964069--37964106	20	1.9	20	94	0	67	44	15	5	34	1.69
37975683--37975742	28	2.1	28	84	0	75	21	8	5	65	1.40
37977936--37977979	23	2.0	22	86	8	63	61	2	0	36	1.09
37977985--37978062	21	3.5	22	77	14	81	47	1	0	51	1.09
37978018--37978062	22	2.0	23	91	8	74	48	2	0	48	1.13
37980186--37980315	61	2.1	63	86	9	187	50	6	7	36	1.56
37981332--37981365	17	2.0	17	100	0	68	41	11	11	35	1.78
37989890--37990271	125	3.1	125	88	1	570	33	16	18	31	1.93
37993476--37993645	49	3.5	49	90	1	270	45	9	2	42	1.49
37993761--37993803	21	2.0	22	82	13	54	6	18	41	32	1.77
37994042--37994084	18	2.4	18	92	0	68	46	9	27	16	1.77
37998065--37998098	3	11.3	3	93	0	59	29	0	32	38	1.58
38001292--38001526	41	5.7	41	87	0	290	22	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38001934--38001967	14	2.3	15	85	5	52	41	0	23	35	1.55
38001987--38002044	14	4.2	13	76	8	53	25	0	37	36	1.57
38001987--38002044	21	2.8	20	76	10	62	25	0	37	36	1.57
38003247--38003312	22	3.0	22	88	2	98	24	50	3	22	1.63
38006661--38006937	43	6.5	43	81	4	294	22	16	29	31	1.96
38012171--38012197	13	2.1	13	100	0	54	48	7	7	37	1.59
38019808--38019852	18	2.5	18	92	0	72	31	4	48	15	1.65
38022939--38022971	8	4.2	8	88	7	50	39	9	0	51	1.34
38022939--38022971	15	2.1	16	88	5	50	39	9	0	51	1.34
38022938--38022975	16	2.4	17	82	13	53	39	7	0	52	1.31
38022580--38024980	286	8.3	285	94	3	3982	31	11	5	51	1.62
38023518--38023550	8	4.2	8	88	7	50	39	9	0	51	1.34
38023518--38023550	15	2.1	16	88	5	50	39	9	0	51	1.34
38023517--38023554	16	2.4	17	82	13	53	39	7	0	52	1.31
38022579--38024980	579	4.2	571	94	2	4031	31	11	5	51	1.62
38023811--38023843	8	4.2	8	88	7	50	39	9	0	51	1.34
38023811--38023843	15	2.1	16	88	5	50	39	9	0	51	1.34
38023810--38023847	16	2.4	17	82	13	53	39	7	0	52	1.31
38022579--38024980	872	2.8	867	95	3	4251	31	11	5	51	1.62
38025220--38025273	28	2.0	28	85	3	74	40	11	5	42	1.64
38025420--38025511	10	8.5	11	76	18	88	1	30	0	68	0.97
38025418--38025521	24	4.5	23	71	17	74	0	32	0	66	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38025427--38025511	34	2.6	33	82	17	115	1	29	0	69	0.96
38025418--38025505	44	2.0	45	95	2	160	1	29	0	69	0.96
38025428--38025510	14	5.8	14	74	13	62	1	28	0	69	0.96
38025389--38025519	44	2.8	47	80	11	153	0	31	0	67	1.02
38026274--38026339	30	2.2	30	86	2	87	53	3	1	42	1.25
38034387--38034420	3	11.0	3	87	6	50	0	29	2	67	1.05
38035254--38035350	27	3.6	27	76	2	97	32	16	19	30	1.94
38040381--38040482	41	2.5	40	87	3	132	31	29	22	16	1.96
38040616--38041070	47	8.9	47	70	16	291	38	16	7	38	1.76
38040610--38040936	98	3.2	100	93	4	550	38	15	7	38	1.75
38040789--38041091	161	1.9	164	91	4	506	38	15	6	39	1.73
38043332--38043365	17	1.9	18	88	5	52	0	23	14	61	1.33
38047127--38047230	41	2.5	41	90	0	154	26	25	15	32	1.95
38052468--38052538	30	2.4	30	85	4	90	35	14	21	29	1.92
38052610--38052671	27	2.3	26	78	10	63	41	17	19	20	1.90
38054956--38055020	24	2.5	27	85	7	82	27	12	29	30	1.93
38058121--38058157	9	4.1	9	92	0	65	45	13	10	29	1.77
38058371--38058430	30	2.0	31	83	3	77	18	40	0	41	1.50
38064255--38064537	61	4.7	61	74	2	219	30	13	26	28	1.94
38064260--38064512	122	2.1	121	79	5	260	31	13	26	28	1.94
38064499--38064566	28	2.4	28	76	11	68	27	13	26	32	1.93
38064517--38064625	29	3.8	29	72	11	89	29	17	24	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38068171--38068208	19	1.9	20	84	10	51	31	13	5	50	1.63
38072049--38072098	26	1.9	26	84	8	66	36	22	6	36	1.79
38073586--38073646	24	2.6	25	82	17	69	3	3	32	60	1.29
38077961--38078109	44	3.4	44	70	7	131	31	20	20	26	1.98
38081159--38081208	26	1.9	26	84	8	66	36	22	6	36	1.79
38082696--38082756	24	2.6	25	82	17	69	3	3	32	60	1.29
38090873--38090915	20	2.2	20	83	8	52	20	25	2	51	1.60
38094548--38094602	20	2.8	20	80	0	65	43	20	27	9	1.81
38099449--38099508	20	3.0	20	76	13	61	51	5	5	38	1.45
38099456--38099508	19	2.7	20	75	16	56	50	5	5	37	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182