genome.fa.s21.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  131  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40289507--40289563	29	2.0	29	89	0	87	29	38	17	14	1.89
40290966--40291026	32	1.9	32	100	0	122	16	11	26	45	1.81
40306953--40307124	51	3.4	50	82	4	220	22	16	29	31	1.96
40307090--40307159	35	2.0	35	94	0	122	25	11	28	34	1.91
40307185--40307273	45	2.0	45	93	0	151	24	17	25	31	1.97
40307364--40307455	45	2.0	45	91	0	148	26	17	23	32	1.97
40307153--40307524	184	2.0	185	95	1	667	29	13	22	34	1.93
40313050--40313241	29	6.6	29	78	8	167	39	11	26	22	1.88
40313028--40313241	58	3.7	58	80	10	229	38	12	26	22	1.89
40313027--40313214	87	2.1	88	84	5	247	38	11	27	22	1.89
40317337--40317652	49	6.6	49	94	2	509	32	6	29	30	1.84
40326714--40326952	50	4.8	50	79	7	227	27	20	28	23	1.99
40339802--40339874	36	2.0	36	81	0	83	28	19	27	24	1.98
40339965--40339990	9	2.9	9	100	0	52	19	0	11	69	1.18
40339985--40340099	39	3.0	38	87	3	149	28	10	13	46	1.77
40340078--40340109	14	2.4	14	90	10	50	25	0	12	62	1.30
40342363--40342433	29	2.4	29	90	0	106	25	21	11	42	1.86
40344302--40344348	20	2.3	20	81	0	58	23	12	34	29	1.92
40347689--40347728	16	2.4	16	79	4	53	22	2	15	60	1.47
40347689--40347739	26	2.0	24	85	7	66	23	1	13	60	1.43
40353361--40353497	51	2.7	51	79	0	175	40	13	6	39	1.71
40355947--40356083	51	2.7	51	79	0	175	40	13	6	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40359574--40359613	16	2.4	16	83	4	53	25	0	15	60	1.35
40369769--40369946	29	6.1	29	87	3	241	20	28	14	37	1.91
40374163--40374220	21	2.7	22	77	20	68	17	39	24	18	1.92
40374206--40374271	20	3.2	20	67	12	62	19	37	25	16	1.93
40380062--40380099	17	2.4	17	91	8	62	31	13	0	55	1.38
40388192--40388417	40	5.7	40	90	4	314	26	27	21	24	1.99
40396184--40396275	39	2.3	39	88	5	132	25	28	22	23	2.00
40396165--40396328	40	4.1	40	80	10	176	24	27	23	25	2.00
40398849--40398939	44	2.1	44	97	0	173	58	8	13	19	1.61
40404587--40404709	27	4.7	26	83	8	133	41	25	15	17	1.89
40404611--40404722	53	2.1	54	88	5	165	41	20	16	20	1.90
40406690--40406731	12	3.5	12	75	12	50	33	0	42	23	1.55
40407243--40407347	27	3.9	27	75	9	106	43	22	12	20	1.85
40407236--40407358	27	4.6	26	75	4	102	45	21	12	21	1.83
40419951--40419980	5	6.0	5	96	0	51	60	3	0	36	1.14
40420209--40420243	5	7.0	5	96	0	52	60	5	0	34	1.21
40419951--40420507	300	2.0	267	85	12	726	45	10	18	25	1.82
40420354--40420406	27	2.0	27	96	0	97	64	3	16	15	1.44
40422402--40422477	28	2.6	28	80	12	75	32	1	5	60	1.27
40422403--40422517	9	12.2	9	73	15	74	33	0	4	60	1.22
40422438--40422514	21	4.0	20	76	17	72	36	1	5	57	1.30
40422402--40422514	19	5.9	19	70	18	74	35	0	4	59	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40422561--40422607	16	2.7	18	87	12	80	25	0	4	70	1.05
40423803--40423860	22	2.6	21	75	20	55	27	31	0	41	1.56
40423838--40423937	51	2.0	51	86	4	139	27	25	2	46	1.64
40425707--40425746	18	2.2	18	86	0	53	17	30	7	45	1.76
40426330--40426696	22	17.0	22	86	3	494	46	30	0	22	1.54
40426330--40426696	65	5.7	64	89	3	497	46	30	0	22	1.54
40426330--40426696	87	4.2	87	85	6	471	46	30	0	22	1.54
40427298--40427723	126	3.4	126	92	1	669	28	23	17	30	1.97
40428368--40428392	13	1.9	13	100	0	50	68	0	0	32	0.90
40431167--40431208	20	2.1	20	86	0	57	21	11	21	45	1.84
40433738--40433935	98	2.0	98	90	1	308	18	14	17	49	1.80
40443296--40443359	27	2.4	27	82	10	69	40	1	9	48	1.45
40444379--40444566	35	5.4	35	70	8	141	23	25	24	27	2.00
40444338--40444572	70	3.3	70	91	4	350	24	24	24	26	2.00
40447152--40447197	15	3.2	15	81	12	69	50	13	8	28	1.70
40450972--40451018	24	2.0	24	100	0	94	46	25	8	19	1.77
40451969--40452012	24	1.9	22	86	9	61	50	9	11	29	1.69
40461598--40461653	23	2.4	23	84	3	76	25	3	10	60	1.45
40475542--40475606	31	2.1	31	97	0	121	21	9	20	49	1.76
40475842--40475897	10	5.8	10	83	8	64	78	3	0	17	0.89
40475853--40475896	9	4.7	9	83	8	52	84	2	0	13	0.73
40475840--40475887	20	2.4	20	96	0	87	79	4	0	16	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40475841--40475896	18	2.9	19	78	7	60	80	3	0	16	0.85
40475842--40475897	20	3.0	18	89	10	78	78	3	0	17	0.89
40477042--40477076	12	2.8	12	91	4	52	68	0	20	11	1.20
40477056--40477116	21	2.9	21	78	9	79	77	0	16	6	0.98
40477068--40477102	9	4.0	9	85	7	54	85	0	14	0	0.59
40477067--40477106	15	2.7	15	85	11	55	82	0	17	0	0.67
40478984--40479025	22	2.0	21	90	4	66	33	0	11	54	1.37
40483292--40483341	20	2.5	20	80	0	55	24	34	12	30	1.91
40489098--40489138	14	2.7	15	85	7	57	73	2	2	21	1.07
40490030--40490119	45	2.0	45	95	0	162	47	20	11	21	1.80
40495855--40495895	14	2.7	15	85	7	57	73	2	2	21	1.07
40496181--40496234	20	2.7	20	88	0	81	24	33	12	29	1.92
40499807--40499852	22	2.1	22	100	0	92	60	17	8	13	1.56
40506171--40506240	31	2.3	31	82	9	81	32	12	28	25	1.93
40510584--40510756	86	2.0	86	100	0	346	25	17	13	43	1.86
40512084--40512136	23	2.3	23	96	0	97	32	26	18	22	1.97
40519198--40519409	101	2.1	101	90	0	334	34	20	22	22	1.96
40520827--40520870	21	2.0	22	86	4	63	63	13	4	18	1.46
40523842--40523891	24	2.1	23	82	10	57	36	2	2	60	1.20
40523869--40524027	58	2.8	57	80	10	182	41	1	3	54	1.24
40550518--40550574	30	1.9	30	85	0	78	38	26	19	15	1.92
40552729--40552792	23	2.8	23	83	9	78	29	12	18	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40552758--40552809	23	2.3	23	83	6	61	42	11	15	30	1.82
40553807--40553848	22	1.9	22	100	0	84	28	19	11	40	1.87
40556099--40556233	72	1.9	72	88	0	207	26	15	22	35	1.94
40566402--40566482	25	3.2	25	72	6	74	30	23	19	25	1.98
40573116--40573259	52	2.8	50	84	8	175	25	21	22	30	1.99
40573116--40573261	77	1.9	77	84	5	197	26	21	21	30	1.98
40573116--40573261	25	5.8	25	85	6	161	26	21	21	30	1.98
40576962--40577011	21	2.4	21	89	0	73	38	2	4	56	1.30
40581539--40581622	31	2.7	31	85	3	116	20	30	14	34	1.92
40581765--40581791	7	3.9	7	100	0	54	44	0	0	55	0.99
40598246--40598505	43	6.1	43	76	4	213	29	18	24	28	1.98
40612349--40612425	37	2.1	37	87	4	111	33	22	24	19	1.97
40613393--40613468	3	25.7	3	75	12	50	64	3	3	27	1.29
40613880--40613939	26	2.2	26	82	5	66	35	6	40	18	1.77
40614475--40614499	10	2.5	10	100	0	50	16	8	8	68	1.38
40620339--40620379	17	2.4	16	84	11	55	78	0	0	21	0.76
40629228--40629289	30	2.1	30	87	0	88	33	8	9	48	1.65
40641217--40641277	25	2.4	25	81	10	72	39	3	0	57	1.15
40658835--40658870	13	2.8	13	91	0	54	27	8	33	30	1.86
40662207--40662268	29	2.1	28	82	11	72	48	4	16	30	1.67
40665119--40665385	40	6.7	40	98	0	507	22	27	20	30	1.98
40673926--40674094	27	6.2	27	84	4	196	30	26	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40673938--40674093	82	1.9	81	88	3	233	29	28	15	26	1.96
40688220--40688400	50	3.7	49	78	9	154	30	21	26	21	1.98
40702205--40702521	27	11.7	26	82	8	289	24	14	19	40	1.90
40702193--40702521	54	6.1	54	82	10	336	24	15	19	40	1.90
40705461--40705986	27	19.7	27	79	6	432	24	15	19	40	1.90
40705460--40705986	134	3.9	132	77	6	472	24	15	19	40	1.90
40711809--40711845	17	2.1	18	85	14	51	43	0	40	16	1.48
40718551--40718637	45	1.9	45	95	0	156	34	25	16	24	1.95
40734090--40734239	55	2.8	54	80	4	149	26	15	29	28	1.96
40734062--40734239	27	6.6	27	77	6	146	25	15	28	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182