genome.fa.s21.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  107  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32409821--32409863	20	2.1	21	87	12	63	46	0	0	53	1.00
32409858--32409896	17	2.2	19	86	9	55	69	0	2	28	1.02
32409855--32409898	18	2.6	16	82	13	52	65	0	2	31	1.05
32410116--32410160	23	2.0	23	91	8	74	51	2	0	46	1.13
32412603--32412655	26	2.0	26	82	7	63	5	20	1	71	1.16
32412605--32412654	18	2.8	19	76	11	52	6	18	2	74	1.12
32415425--32415462	14	2.7	15	88	8	53	34	21	21	23	1.97
32419680--32419731	26	2.0	26	82	14	63	13	7	3	75	1.17
32419695--32419738	21	2.2	20	88	12	63	11	6	2	79	1.01
32420508--32420568	21	2.8	21	85	9	70	37	13	1	47	1.52
32425823--32425869	6	8.0	6	90	4	69	78	0	21	0	0.75
32425824--32425869	17	2.6	17	89	3	65	78	0	21	0	0.76
32425823--32425867	23	2.0	23	90	0	72	80	0	20	0	0.72
32427232--32427371	44	3.2	44	66	8	122	27	18	25	29	1.98
32427251--32427388	45	3.1	45	63	8	111	28	16	25	29	1.97
32427171--32427635	88	5.3	88	85	1	592	30	19	22	28	1.98
32427573--32427809	132	1.8	131	83	2	314	29	19	23	27	1.98
32427793--32427891	51	1.9	51	91	0	162	32	14	18	35	1.90
32427880--32427922	21	2.1	21	86	4	61	41	11	27	18	1.85
32427901--32428144	51	4.8	51	81	2	283	31	18	22	28	1.97
32427901--32428144	102	2.4	102	93	0	416	31	18	22	28	1.97
32428184--32428359	44	4.0	44	79	1	201	30	19	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32428190--32428350	88	1.8	88	89	2	252	29	19	21	29	1.98
32428190--32428390	44	4.6	44	74	7	167	29	19	20	29	1.98
32428479--32428592	44	2.6	44	84	2	149	28	17	23	29	1.97
32428232--32428793	242	2.3	241	90	3	880	30	18	21	29	1.97
32429474--32429519	22	2.1	21	84	11	58	10	10	0	78	0.97
32435693--32436336	322	2.0	322	100	0	1288	38	18	11	31	1.86
32454006--32454063	19	3.1	17	79	18	62	56	0	6	36	1.26
32454310--32454348	20	2.0	20	84	0	51	43	2	2	51	1.29
32454316--32454375	10	5.8	10	75	11	50	45	5	0	50	1.23
32454344--32454376	12	2.9	12	86	13	52	42	6	0	51	1.26
32454311--32454381	30	2.3	30	83	11	83	46	4	1	47	1.30
32454977--32455038	21	2.9	21	75	15	65	38	37	0	24	1.56
32455183--32455235	22	2.4	21	81	12	54	28	49	3	18	1.65
32455521--32455659	40	3.5	40	74	9	131	18	18	24	38	1.93
32456002--32456073	36	2.0	36	100	0	144	38	16	25	19	1.92
32456631--32456664	3	11.3	3	100	0	68	67	0	0	32	0.91
32463735--32463769	15	2.3	15	95	0	61	40	17	11	31	1.85
32471091--32471150	26	2.4	24	79	15	68	60	13	5	21	1.52
32473417--32473470	28	1.9	28	88	7	83	27	1	3	66	1.19
32475264--32475472	86	2.4	85	82	7	253	33	12	11	42	1.78
32475312--32475598	85	3.4	83	79	10	244	33	10	10	45	1.73
32475439--32475598	84	1.9	84	88	2	241	35	10	10	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32475439--32475656	84	2.6	85	83	5	230	34	11	10	42	1.76
32475606--32475724	58	2.0	58	82	4	141	30	10	10	48	1.71
32483395--32483454	29	2.0	30	81	9	70	36	0	1	61	1.06
32483400--32483438	21	1.9	21	89	5	62	38	0	0	61	0.96
32487325--32487362	12	3.2	12	82	14	51	47	15	10	26	1.78
32490709--32490751	22	1.9	24	81	13	56	58	2	6	32	1.38
32491501--32492059	274	2.0	277	90	1	874	34	10	13	41	1.79
32498206--32498364	9	17.4	9	67	20	66	33	2	4	59	1.30
32498241--32498364	9	13.3	9	70	18	69	34	2	3	59	1.26
32498258--32498315	19	3.0	19	78	12	64	34	5	3	56	1.38
32500915--32500983	34	2.0	34	100	0	138	33	17	11	37	1.86
32501225--32501263	18	2.3	16	86	8	51	35	20	7	35	1.81
32501391--32501427	18	2.1	18	94	0	65	13	21	8	56	1.63
32503870--32503945	39	1.9	39	94	0	134	38	18	2	40	1.65
32508273--32508326	28	1.9	28	88	0	81	55	18	11	14	1.68
32513356--32513424	27	2.6	27	93	4	113	37	24	13	24	1.91
32513955--32514022	33	2.1	33	94	0	118	44	35	5	14	1.70
32514020--32514063	22	2.0	23	81	4	54	40	9	9	40	1.68
32518973--32519193	70	3.1	70	90	5	320	25	13	18	42	1.86
32518983--32519162	23	7.7	23	74	11	143	23	12	17	46	1.82
32518998--32519225	23	9.7	23	68	19	89	25	13	18	42	1.86
32524816--32524850	16	2.2	16	94	0	61	48	17	17	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32525495--32525618	30	4.1	30	88	0	176	31	10	16	41	1.82
32530956--32531539	50	11.9	50	66	10	258	31	22	20	24	1.98
32531105--32531484	49	7.6	51	67	7	208	31	23	20	25	1.98
32531075--32531556	98	4.8	98	82	3	498	30	22	20	25	1.98
32530977--32531556	296	2.0	293	83	7	737	31	22	20	25	1.98
32531560--32531729	44	4.0	43	75	13	138	31	22	21	24	1.98
32533186--32533218	9	3.7	9	100	0	66	24	0	0	75	0.80
32533186--32533271	12	7.2	12	78	5	75	30	5	1	62	1.26
32533188--32533271	15	5.6	15	78	5	80	29	5	1	63	1.26
32536290--32536549	119	2.2	117	87	6	366	42	11	3	42	1.57
32536443--32536787	144	2.3	146	85	8	475	44	9	4	41	1.57
32538677--32538758	39	2.1	39	93	0	137	37	18	15	28	1.91
32541837--32541897	15	4.1	15	77	8	61	55	1	9	32	1.42
32541837--32541913	9	8.6	9	75	5	57	59	1	7	31	1.34
32541837--32541913	6	12.8	6	75	5	57	59	1	7	31	1.34
32548971--32549063	46	2.0	46	100	0	186	46	8	21	23	1.79
32553563--32553599	3	12.3	3	88	11	58	64	0	0	35	0.94
32553562--32553598	18	2.1	18	95	5	67	62	0	0	37	0.96
32553563--32553615	24	2.2	24	83	9	65	66	1	0	32	1.03
32554017--32554114	21	4.7	21	74	18	71	41	15	6	36	1.72
32554017--32554074	22	2.6	22	84	7	73	43	17	3	36	1.66
32554030--32554127	19	4.8	19	85	9	106	39	15	8	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32554925--32555300	44	8.7	44	86	6	500	27	26	18	27	1.98
32554971--32555299	170	1.9	170	91	2	536	27	26	18	27	1.98
32555314--32556229	88	10.4	88	90	0	1364	20	24	28	27	1.99
32562423--32562463	21	2.0	21	85	0	55	56	4	7	31	1.48
32562468--32562505	17	2.4	17	86	8	53	76	0	2	21	0.91
32562469--32562524	15	3.6	15	80	4	67	75	1	1	21	0.99
32562924--32563053	64	2.0	64	88	2	190	33	26	16	23	1.96
32563079--32563174	19	4.7	21	81	11	74	40	16	6	36	1.74
32563079--32563136	22	2.6	22	84	7	73	43	17	3	36	1.66
32563115--32563187	19	3.8	19	90	0	119	36	16	9	36	1.81
32576210--32576276	10	6.3	11	71	13	50	38	2	0	58	1.14
32587797--32587823	11	2.5	11	100	0	54	55	0	0	44	0.99
32588560--32588601	17	2.5	17	84	7	59	64	0	0	35	0.94
32590105--32590138	16	2.1	16	88	0	50	52	0	2	44	1.16
32605292--32605347	26	2.2	26	80	6	60	17	21	25	35	1.95
32610453--32610505	26	2.0	26	100	0	106	39	22	11	26	1.88
32612982--32613020	19	2.1	19	95	0	69	43	17	5	33	1.72
32620248--32620301	27	2.0	27	88	0	81	25	29	20	24	1.99
32623641--32623772	69	1.9	69	96	0	246	40	7	16	35	1.77
32623943--32623976	15	2.3	15	89	0	50	61	2	5	29	1.34
32624023--32624060	18	2.1	18	100	0	76	31	0	39	28	1.57
32627444--32627496	22	2.4	23	78	6	56	73	1	13	11	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32631463--32631514	20	2.6	20	78	9	61	65	3	0	30	1.10
32631492--32631532	16	2.6	16	88	3	57	63	2	0	34	1.08
32631937--32632012	24	3.0	26	77	16	70	39	0	0	60	0.97
32631934--32632024	24	3.3	28	73	20	68	42	0	0	57	0.99
32632986--32633019	15	2.2	16	89	5	52	26	8	0	64	1.22
32633079--32633119	20	2.0	21	85	4	57	21	4	0	73	1.02
32638677--32638701	2	12.5	2	100	0	50	48	52	0	0	1.00
32647133--32647183	25	2.0	25	96	0	93	21	19	17	41	1.91
32653996--32654048	26	2.0	26	100	0	106	43	22	15	18	1.87
32659254--32659300	22	2.1	23	88	4	69	10	8	10	70	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182