genome.fa.s21.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  88  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26557658--26557725	25	2.7	25	84	11	77	61	11	11	14	1.56
26564130--26564175	21	2.2	23	81	14	55	47	10	8	32	1.69
26567415--26567455	15	2.7	16	85	11	59	41	4	4	48	1.46
26568937--26569000	26	2.5	26	89	0	101	26	28	20	25	1.99
26570907--26570977	35	2.0	35	91	0	115	21	16	12	49	1.79
26572124--26572206	42	2.0	42	97	0	157	43	4	26	25	1.74
26573748--26573926	66	2.7	66	80	1	198	25	26	26	21	1.99
26575199--26575270	36	2.0	35	84	7	92	26	23	13	36	1.93
26577777--26577817	3	14.3	3	87	10	50	24	0	0	75	0.80
26577777--26577817	14	2.9	14	81	3	55	24	0	0	75	0.80
26580257--26580371	40	2.8	40	78	2	131	37	20	20	20	1.95
26580408--26580527	41	2.9	41	89	1	168	26	24	21	27	1.99
26581011--26581062	14	3.7	14	78	0	50	25	0	38	36	1.56
26581023--26581063	21	2.0	21	85	0	55	26	0	41	31	1.56
26582182--26582499	148	2.1	150	89	4	475	40	14	13	31	1.85
26586949--26587217	43	6.3	42	86	4	313	23	17	31	27	1.97
26586947--26587217	86	3.2	86	84	2	357	22	17	31	28	1.97
26586949--26587217	129	2.1	129	85	0	349	23	17	31	27	1.97
26588915--26589323	202	2.0	202	93	1	705	42	3	15	38	1.64
26598186--26598216	2	15.5	2	93	0	53	0	51	0	48	1.00
26600716--26600755	9	4.4	9	90	0	62	27	10	22	40	1.86
26600716--26600755	18	2.2	18	95	0	71	27	10	22	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26615503--26615529	6	4.5	6	100	0	54	14	51	0	33	1.43
26619245--26619269	12	2.1	12	100	0	50	76	8	16	0	1.02
26622823--26622871	14	3.0	17	80	14	50	46	0	6	46	1.27
26625386--26625436	19	2.7	19	80	19	63	33	0	11	54	1.37
26627451--26627496	25	1.9	23	82	8	56	52	2	4	41	1.33
26632395--26632451	26	2.2	25	75	9	62	17	24	5	52	1.65
26638884--26638990	45	2.4	45	80	9	137	42	18	16	21	1.89
26639190--26639276	40	2.2	40	85	0	111	41	19	8	31	1.80
26640058--26640084	5	5.4	5	100	0	54	59	0	0	40	0.98
26641766--26641836	34	2.1	34	100	0	142	42	23	2	30	1.69
26646124--26646223	45	2.2	45	83	0	128	42	17	18	23	1.89
26647297--26647512	5	43.2	5	100	0	432	59	0	0	40	0.97
26650286--26650340	20	2.7	20	80	2	56	25	29	25	20	1.99
26650295--26650340	21	2.2	20	84	3	56	26	23	26	23	2.00
26651212--26651241	15	1.9	16	93	6	53	40	33	6	20	1.78
26663951--26664164	41	5.2	41	84	2	288	19	27	17	35	1.94
26663951--26664145	83	2.4	82	86	2	284	18	27	17	36	1.93
26664886--26664920	15	2.3	15	100	0	70	28	31	25	14	1.95
26667388--26667713	165	2.0	165	96	0	598	39	17	8	34	1.81
26670465--26670978	31	16.7	31	87	2	664	31	8	15	43	1.77
26670465--26670978	61	8.4	62	85	3	664	31	8	15	43	1.77
26670465--26670978	92	5.6	91	87	3	631	31	8	15	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26672694--26672779	30	2.8	31	81	6	88	44	3	18	33	1.67
26680019--26680048	16	1.9	15	93	6	51	86	0	0	13	0.57
26681012--26681195	92	2.0	92	100	0	368	25	19	21	33	1.97
26681210--26681849	169	3.8	169	90	0	933	27	27	15	29	1.96
26681871--26681957	44	2.0	44	93	0	147	29	24	17	28	1.97
26684882--26684966	9	9.4	9	88	0	116	45	22	7	24	1.77
26684882--26684966	27	3.1	27	89	0	134	45	22	7	24	1.77
26685073--26685116	18	2.4	18	88	0	61	13	2	43	40	1.57
26693399--26693425	12	2.2	12	100	0	54	51	0	0	48	1.00
26698660--26698706	21	2.2	22	85	11	62	38	6	0	55	1.26
26700410--26700514	52	2.0	52	81	0	120	46	6	11	35	1.66
26700954--26701009	15	3.5	15	72	13	58	46	1	0	51	1.11
26700935--26701014	33	2.5	33	93	2	135	51	2	0	46	1.14
26701107--26701137	15	2.0	16	93	6	55	61	0	0	38	0.96
26701174--26701206	15	2.2	15	94	0	57	57	0	0	42	0.98
26724621--26724777	42	3.8	42	82	3	113	44	19	21	14	1.86
26724627--26724695	21	3.3	21	75	0	66	40	20	24	14	1.90
26724680--26724744	20	3.2	20	68	4	58	46	18	20	15	1.84
26724634--26724790	83	1.9	83	85	2	217	44	18	21	15	1.86
26724663--26724795	42	3.2	42	82	6	171	45	18	20	15	1.86
26724684--26724797	21	5.5	21	65	10	72	47	18	17	16	1.83
26724882--26724929	24	2.0	24	95	0	87	16	29	10	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26724988--26725074	45	1.9	45	85	0	120	45	12	1	40	1.50
26727161--26727199	17	2.2	18	86	4	53	48	12	2	35	1.55
26752346--26752406	30	2.0	30	96	0	113	19	27	32	19	1.96
26770599--26770775	39	4.5	39	88	0	246	42	20	6	29	1.77
26792922--26792969	10	4.8	10	78	0	60	66	2	4	27	1.21
26792922--26792976	20	2.7	19	78	10	56	67	1	5	25	1.22
26800101--26800155	20	2.7	19	83	10	74	10	32	12	43	1.78
26800094--26800245	40	3.8	40	75	9	114	14	23	14	47	1.81
26800118--26800298	60	3.0	60	84	1	229	14	24	16	44	1.85
26800118--26800314	20	9.9	20	71	7	105	15	24	17	42	1.87
26800195--26800311	60	2.0	60	87	3	173	14	23	19	42	1.88
26803446--26803487	11	3.6	11	81	12	57	35	0	4	59	1.19
26803512--26803541	15	2.0	15	93	0	51	70	0	26	3	1.03
26806992--26807033	22	1.9	22	85	0	57	14	21	23	40	1.90
26807193--26807290	43	2.3	42	83	1	124	19	20	32	27	1.97
26807277--26807570	43	6.8	43	75	8	206	29	27	18	24	1.98
26807256--26807563	86	3.6	85	76	5	260	28	27	19	24	1.98
26807921--26808001	21	3.9	21	83	0	90	9	43	16	30	1.80
26807922--26808013	42	2.2	42	84	3	114	9	42	16	31	1.80
26807989--26808032	21	2.1	21	95	0	79	9	40	13	36	1.76
26808024--26808150	66	1.9	66	93	3	220	14	27	18	39	1.90
26813601--26813634	16	2.1	16	94	0	59	32	0	14	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26813615--26813670	25	2.2	25	83	0	67	35	5	14	44	1.68
26813672--26813813	9	16.7	9	67	13	68	40	2	16	40	1.61
26813776--26813808	16	2.1	16	100	0	66	30	0	24	45	1.53
26813794--26814002	34	6.3	34	81	7	252	42	2	10	44	1.53
26813694--26813851	84	1.9	84	82	2	201	41	1	13	42	1.56
26813792--26813982	65	2.9	64	92	3	310	41	2	10	45	1.51
26813794--26814002	99	2.1	98	84	5	269	42	2	10	44	1.53
26814878--26814922	18	2.4	19	88	3	65	35	40	4	20	1.72
26815472--26816182	113	6.3	113	84	5	911	31	24	20	22	1.98
26824150--26824201	6	8.7	6	100	0	104	0	34	48	17	1.48
26824364--26824413	25	2.0	25	84	7	66	46	0	0	54	1.00
26828410--26828460	22	2.5	20	84	9	66	29	21	3	45	1.70
26829619--26829654	17	2.0	18	89	10	56	0	27	0	72	0.85
26829708--26829760	22	2.5	22	87	9	74	18	3	5	71	1.21
26832112--26832306	98	2.0	99	91	1	320	42	10	24	22	1.84
26839755--26839802	24	2.0	24	100	0	96	41	20	20	16	1.90
26841729--26841825	29	3.3	29	74	5	106	31	18	19	29	1.96
26850798--26850834	3	12.3	3	100	0	74	64	0	0	35	0.94
26857245--26857274	16	1.9	15	93	6	51	56	0	26	16	1.40
26858998--26859048	26	1.9	27	84	4	68	66	0	5	27	1.14
26861169--26861219	26	1.9	27	84	4	68	66	0	5	27	1.14
26863885--26863919	16	2.2	16	89	0	52	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26866665--26866752	35	2.6	34	83	7	99	60	3	2	34	1.26
26866678--26866750	33	2.2	33	82	4	85	57	4	2	35	1.32
26866689--26866777	26	3.3	26	76	15	85	59	3	1	35	1.21
26867129--26867164	3	12.0	3	100	0	72	66	0	0	33	0.92
26867738--26867778	9	4.7	9	90	3	66	85	0	0	14	0.60
26868731--26868847	43	2.7	43	84	4	137	29	18	18	32	1.95
26868727--26868847	44	2.8	45	83	3	149	29	19	18	33	1.95
26868880--26869069	50	3.8	50	70	5	152	23	25	23	27	2.00
26868854--26869061	99	2.1	100	91	2	339	24	23	22	29	1.99
26868854--26869011	50	3.2	50	70	4	140	24	22	22	31	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182