genome.fa.s21.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  151  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46392838--46392901	16	4.0	16	75	11	60	26	1	18	53	1.54
46392881--46393219	44	7.5	44	79	15	370	33	2	15	48	1.60
46392933--46393034	53	1.9	53	93	0	177	36	0	16	46	1.54
46392903--46393250	90	3.9	89	76	11	311	34	2	15	47	1.60
46392987--46393079	37	2.6	37	94	3	163	32	0	16	51	1.44
46392931--46393044	53	2.2	53	88	0	174	35	0	16	47	1.53
46393003--46393065	21	3.2	21	65	28	57	34	0	15	49	1.45
46393061--46393085	7	3.6	7	100	0	50	28	0	16	56	1.41
46392883--46393219	185	1.9	176	87	6	487	33	2	15	48	1.60
46393204--46393346	9	16.2	9	65	20	52	32	1	18	47	1.57
46393200--46393345	25	5.9	25	71	19	92	32	1	18	47	1.57
46393260--46393342	37	2.3	36	81	10	98	31	1	18	49	1.55
46393307--46393379	33	2.4	30	86	9	94	32	0	15	52	1.43
46393327--46393407	42	1.9	42	92	0	135	35	1	13	49	1.50
46394870--46395116	84	2.9	84	92	0	404	32	21	17	27	1.96
46395577--46395835	88	2.9	88	86	5	362	44	25	1	28	1.63
46395820--46395859	14	2.9	14	80	0	53	30	47	0	22	1.52
46395820--46395859	21	1.9	21	89	0	62	30	47	0	22	1.52
46395953--46395978	12	2.2	12	100	0	52	30	50	0	19	1.48
46396019--46396052	15	2.3	15	95	5	61	35	35	0	29	1.58
46396616--46396984	114	3.2	114	88	0	515	27	26	20	25	1.99
46396888--46397056	73	2.3	72	84	3	221	26	21	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46396774--46397170	187	2.1	187	86	2	539	25	24	22	27	2.00
46396958--46397170	115	1.9	114	83	5	279	25	24	23	26	2.00
46408391--46408447	29	1.9	30	82	3	71	40	14	12	33	1.83
46408525--46408562	17	2.2	17	90	0	58	42	0	18	39	1.50
46409200--46409228	3	9.7	3	100	0	58	68	0	0	31	0.89
46411126--46411182	18	2.9	20	76	12	64	57	0	3	38	1.16
46411115--46411186	9	7.6	9	73	16	56	61	1	2	34	1.19
46414193--46414254	33	1.9	32	87	9	90	40	3	1	54	1.26
46414657--46414697	17	2.4	18	80	19	52	56	0	4	39	1.21
46414701--46414737	18	2.1	18	89	0	56	70	2	0	27	1.01
46432290--46432356	33	2.0	33	100	0	134	26	5	20	46	1.74
46432384--46432408	12	2.1	12	100	0	50	24	28	8	40	1.83
46435080--46435257	27	6.6	27	83	3	205	26	15	28	29	1.96
46435081--46435236	82	1.9	81	88	3	233	26	15	28	29	1.96
46435077--46435257	82	2.2	81	83	2	229	27	15	27	29	1.96
46436797--46436932	29	4.6	29	81	3	146	34	27	12	25	1.92
46436797--46436935	60	2.4	59	87	2	190	35	27	12	24	1.91
46447251--46447320	33	2.1	33	94	0	122	42	21	4	31	1.72
46447569--46447858	41	7.1	41	83	1	314	36	16	25	21	1.93
46447563--46447871	123	2.5	123	81	6	353	36	15	25	22	1.93
46448610--46448657	24	2.0	24	100	0	96	41	12	12	33	1.80
46458617--46458654	17	2.4	16	83	12	51	42	2	5	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46462327--46462384	20	2.8	21	84	10	66	55	3	1	39	1.27
46462366--46462403	11	3.4	11	96	3	67	57	0	2	39	1.12
46462387--46462420	17	2.0	17	88	0	50	64	0	0	35	0.94
46462352--46462414	20	3.0	20	73	8	63	60	0	1	38	1.07
46462378--46462440	29	2.2	29	91	0	99	63	0	1	34	1.04
46462352--46462470	42	3.0	41	77	18	126	59	0	1	38	1.07
46462389--46462461	29	2.6	27	85	10	85	63	0	1	35	1.04
46462358--46462493	39	3.5	39	81	12	122	61	0	1	37	1.05
46465305--46465389	27	3.1	27	79	0	80	34	20	20	25	1.96
46465449--46465506	24	2.4	24	85	5	73	18	3	27	50	1.63
46465570--46465639	26	2.7	26	80	8	63	15	20	27	37	1.93
46465595--46465651	26	2.2	26	93	0	96	15	21	26	36	1.93
46465605--46465660	26	2.2	26	90	0	85	14	19	30	35	1.91
46465654--46465841	32	5.8	33	85	3	242	22	19	19	39	1.93
46465656--46465841	65	2.9	65	85	1	250	22	19	18	39	1.93
46465648--46465841	97	2.0	96	86	3	273	22	19	18	39	1.92
46479607--46479660	23	2.3	24	75	9	58	75	3	7	12	1.14
46493004--46493085	28	3.0	28	89	5	123	17	21	26	34	1.95
46499141--46499178	18	2.1	18	90	0	58	44	21	2	31	1.66
46499622--46499673	18	2.9	18	74	5	52	67	3	3	25	1.25
46504978--46505117	61	2.3	61	90	2	210	33	12	25	28	1.93
46506872--46506941	7	10.0	7	87	0	86	37	0	32	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46517528--46517589	16	3.6	18	71	18	60	32	6	3	58	1.40
46517535--46517604	33	2.1	34	89	2	106	35	8	1	54	1.40
46525041--46525092	16	3.3	15	71	12	50	50	0	0	50	1.00
46528636--46528722	25	3.5	25	82	0	102	29	19	18	32	1.96
46534635--46534760	20	6.3	19	71	9	81	14	26	18	41	1.88
46538879--46539015	70	2.0	70	94	0	238	37	23	8	30	1.85
46540477--46540567	29	3.1	29	87	0	137	23	27	13	36	1.92
46542622--46542660	19	2.1	19	95	0	69	25	30	23	20	1.98
46544753--46544791	19	2.1	19	95	0	69	25	30	23	20	1.98
46546877--46546987	51	2.2	51	78	0	123	33	25	16	25	1.96
46549637--46549706	20	3.5	20	71	11	54	35	21	31	11	1.89
46549714--46549751	20	1.9	20	88	0	58	42	21	23	13	1.88
46554955--46555065	50	2.2	50	93	1	186	45	3	40	10	1.57
46555947--46556021	34	2.2	34	80	4	89	33	21	17	28	1.96
46556481--46556870	27	14.4	27	84	2	442	20	15	20	44	1.87
46568355--46568401	2	23.5	2	95	0	85	0	51	0	48	1.00
46572295--46572352	22	2.6	22	81	7	64	41	17	5	36	1.72
46572331--46572385	21	2.7	21	91	5	87	38	14	9	38	1.78
46572941--46573190	44	5.7	44	77	8	186	26	22	20	30	1.98
46573230--46573386	50	3.1	50	75	1	154	26	22	19	30	1.98
46573205--46573386	100	1.8	100	85	2	258	27	21	20	30	1.98
46573425--46573566	45	3.2	45	81	2	178	28	19	21	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46573566--46574064	88	5.7	88	89	0	730	21	23	26	28	1.99
46583092--46583131	21	1.9	21	89	0	62	30	30	17	22	1.97
46582870--46583354	242	2.0	243	94	1	857	35	17	12	33	1.88
46584572--46584625	21	2.8	21	89	10	80	38	12	9	38	1.76
46584547--46584625	21	3.8	19	75	16	77	39	12	7	40	1.72
46594944--46595040	48	2.0	48	100	0	194	35	12	10	42	1.77
46595150--46595270	24	5.1	23	68	21	88	28	12	27	32	1.93
46595134--46595277	48	3.0	48	97	0	270	29	11	26	31	1.92
46599685--46599729	21	2.2	21	96	4	83	40	24	0	35	1.56
46599701--46599792	37	2.5	36	87	7	105	39	21	1	38	1.61
46611790--46611928	56	2.6	53	85	6	167	26	21	29	22	1.99
46622338--46622409	28	2.6	28	97	0	135	22	23	30	23	1.99
46622766--46622852	27	3.3	26	85	4	111	16	20	20	42	1.89
46624541--46624597	25	2.3	24	78	3	60	29	19	19	31	1.96
46624602--46624667	25	2.7	26	79	6	68	33	15	28	22	1.94
46641516--46641568	21	2.6	21	80	17	58	28	26	28	16	1.97
46641530--46641570	21	2.0	21	95	0	73	21	24	34	19	1.97
46647224--46647281	29	2.0	29	100	0	116	27	10	34	27	1.89
46648470--46648527	29	2.0	29	100	0	116	27	10	34	27	1.89
46651722--46651765	16	2.8	16	73	13	54	27	27	11	34	1.91
46657303--46657353	26	1.9	27	88	4	77	29	21	21	27	1.99
46660060--46660174	46	2.4	46	83	9	135	39	7	1	51	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46660144--46660209	34	2.0	34	91	8	109	45	12	0	42	1.41
46669822--46670000	56	3.1	54	68	22	164	44	1	5	49	1.33
46669705--46670040	120	2.8	120	98	0	636	43	0	5	50	1.30
46670253--46670322	16	4.4	16	88	0	95	25	34	4	35	1.76
46670253--46670317	32	2.0	32	93	0	112	23	35	4	36	1.75
46671365--46671445	26	3.1	26	71	18	78	40	6	1	51	1.35
46671348--46671489	52	2.9	47	83	13	178	41	9	1	47	1.44
46671348--46671489	49	2.9	50	84	12	177	41	9	1	47	1.44
46671429--46671609	94	1.9	95	90	1	292	36	13	4	45	1.64
46677179--46677301	28	4.4	28	83	5	160	29	23	25	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182