genome.fa.s21.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  158  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48596992--48597036	19	2.4	19	82	13	58	53	0	6	40	1.27
48597118--48597161	17	2.6	17	85	3	63	47	0	11	40	1.39
48597285--48597320	3	12.0	3	87	0	54	63	2	2	30	1.22
48597622--48597679	22	2.6	22	84	7	73	43	17	5	34	1.71
48597635--48597705	21	3.4	19	84	11	70	40	14	9	35	1.79
48597831--48597860	14	2.1	14	93	0	51	13	0	16	70	1.18
48599653--48599707	12	5.3	10	77	18	51	21	1	3	72	1.09
48599653--48599707	5	10.6	5	76	21	51	21	1	3	72	1.09
48599657--48599713	30	1.9	30	86	13	82	22	1	3	71	1.10
48600321--48600382	31	2.0	31	100	0	124	16	6	35	41	1.74
48601741--48601797	29	1.9	29	85	3	78	29	31	24	14	1.94
48609773--48609797	6	4.2	6	100	0	50	16	0	0	84	0.63
48610279--48610316	20	1.9	20	84	10	51	52	10	7	28	1.64
48614348--48614541	50	3.9	50	78	3	178	24	26	20	28	1.99
48621766--48621823	29	2.0	29	90	3	91	8	37	22	31	1.84
48623138--48623331	50	3.9	50	81	2	203	22	26	23	27	1.99
48633589--48633655	29	2.3	30	89	5	102	25	16	16	41	1.88
48633912--48633962	22	2.3	22	96	0	93	27	31	0	41	1.56
48635111--48635135	7	3.6	7	100	0	50	28	0	12	60	1.32
48636223--48636291	25	2.7	25	86	2	102	46	2	11	39	1.55
48636287--48636335	18	2.7	18	87	0	62	48	18	2	30	1.59
48636327--48636398	35	2.1	34	92	2	117	41	30	1	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48636376--48636416	17	2.3	18	91	4	66	43	24	2	29	1.67
48636294--48636479	81	2.3	82	87	8	269	44	26	1	28	1.61
48636393--48636474	29	2.8	29	96	0	146	43	29	1	25	1.62
48636312--48636474	29	5.8	29	67	22	107	43	28	1	26	1.63
48636624--48636692	25	2.7	25	86	2	102	46	2	11	39	1.55
48636688--48636736	18	2.7	18	87	0	62	48	18	2	30	1.59
48636728--48636799	35	2.1	34	92	2	117	41	30	1	26	1.64
48636777--48636817	17	2.3	18	91	4	66	43	24	2	29	1.67
48636748--48636893	47	3.0	48	89	5	215	45	27	0	26	1.59
48636777--48637327	18	34.4	17	59	23	74	45	25	1	27	1.60
48636794--48636985	29	6.8	28	74	15	130	45	27	0	26	1.57
48636084--48636845	401	1.9	401	99	0	1497	40	22	11	25	1.88
48636763--48637021	47	5.6	47	75	18	229	44	27	0	26	1.59
48636841--48636985	29	4.7	33	80	17	154	46	26	0	26	1.53
48636841--48638604	58	30.8	55	81	13	1508	45	27	0	27	1.58
48637001--48638603	29	56.1	28	80	10	943	45	27	0	27	1.58
48637403--48637444	18	2.3	18	91	0	66	50	21	0	28	1.49
48637514--48637555	18	2.3	18	91	0	66	50	21	0	28	1.49
48637625--48637666	18	2.3	18	91	0	66	50	21	0	28	1.49
48637767--48638604	29	28.9	29	99	0	1640	45	27	0	27	1.55
48638588--48638629	18	2.3	18	83	0	57	47	19	0	33	1.49
48637325--48638604	87	14.7	86	88	8	1793	44	27	0	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48638637--48638828	55	3.5	55	99	0	375	38	11	6	43	1.67
48638801--48638835	18	1.9	18	94	0	61	37	8	2	51	1.47
48642030--48642365	124	2.7	124	97	0	618	30	21	17	30	1.96
48646065--48646090	9	2.9	9	100	0	52	57	0	0	42	0.98
48646157--48646222	31	2.2	30	86	13	91	45	0	0	54	0.99
48646676--48646754	15	5.1	16	81	10	76	72	0	2	25	0.98
48646676--48646755	18	4.4	17	69	27	56	72	0	2	25	0.97
48646712--48646757	22	2.0	23	80	12	51	73	0	0	26	0.83
48650447--48650622	51	3.5	51	81	4	212	31	24	13	31	1.93
48658067--48658258	51	3.8	49	79	8	208	31	25	14	29	1.94
48665809--48665995	51	3.7	50	74	9	182	32	27	15	24	1.95
48665807--48665991	101	1.8	101	89	3	291	32	27	15	24	1.95
48671483--48671560	27	2.9	27	74	11	79	52	26	2	17	1.58
48671568--48671597	14	2.1	14	93	0	51	16	6	30	46	1.73
48671628--48671682	26	2.1	26	83	6	67	21	12	27	38	1.90
48672148--48672220	19	3.8	19	92	0	128	38	9	15	36	1.80
48672148--48672246	19	4.9	21	86	6	93	37	8	16	38	1.78
48681997--48682030	17	1.9	18	88	5	52	20	17	26	35	1.95
48692531--48692700	27	6.4	25	72	9	124	15	16	33	34	1.91
48692531--48692700	80	2.1	80	89	2	261	15	16	33	34	1.91
48709096--48709255	45	3.7	44	78	12	145	28	24	20	26	1.99
48708968--48709385	44	9.8	42	73	12	235	29	23	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48709189--48709432	128	1.9	123	82	8	303	29	21	20	27	1.98
48717555--48717600	24	1.9	24	86	0	65	10	26	17	45	1.81
48726102--48726204	44	2.3	45	83	8	129	45	24	18	11	1.82
48726102--48726226	23	5.6	22	80	10	121	44	25	19	11	1.84
48727082--48727129	24	2.0	24	100	0	96	54	4	12	29	1.56
48739570--48739626	29	2.0	29	82	6	71	42	8	17	31	1.80
48741015--48741120	46	2.3	46	78	0	131	32	23	14	30	1.94
48741460--48741490	15	2.1	15	100	0	62	41	12	6	38	1.69
48743238--48743273	3	12.3	3	94	5	65	36	0	0	63	0.94
48751542--48751611	30	2.3	31	80	9	81	41	17	14	27	1.87
48759733--48759807	26	2.9	26	70	7	62	29	45	14	10	1.79
48765287--48765324	20	1.9	19	89	5	58	23	21	0	55	1.44
48771114--48771162	17	2.9	16	74	14	53	42	0	12	44	1.41
48773316--48773909	104	5.7	104	85	2	744	30	17	14	36	1.91
48784068--48784107	21	1.9	21	89	0	62	30	32	12	25	1.92
48793203--48793366	46	3.6	46	87	2	235	35	15	20	28	1.93
48795840--48796009	57	3.0	55	81	8	173	26	13	23	36	1.92
48795840--48796009	29	5.9	29	80	5	168	26	13	23	36	1.92
48804790--48804816	6	4.5	6	100	0	54	18	0	14	66	1.25
48809319--48809348	9	3.4	9	95	4	53	50	0	20	30	1.49
48814399--48814435	6	6.2	6	96	0	56	10	0	5	83	0.79
48815172--48815207	18	2.0	18	88	0	54	41	2	8	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48818055--48818334	150	1.9	149	81	3	348	22	28	20	28	1.99
48818055--48818338	50	5.7	50	83	2	304	22	28	20	28	1.99
48823040--48823067	6	4.7	6	100	0	56	50	0	0	50	1.00
48824713--48825009	68	4.4	67	79	4	274	33	17	22	26	1.96
48824719--48825009	136	2.1	137	82	5	340	34	17	22	26	1.96
48834064--48834094	5	6.2	5	92	0	53	64	0	35	0	0.94
48837956--48837998	20	2.0	21	86	8	61	25	18	27	27	1.98
48850368--48850421	16	3.3	16	74	5	63	35	25	12	25	1.92
48850364--48850429	33	2.0	33	100	0	132	36	24	12	27	1.91
48852137--48852264	70	1.9	69	82	6	163	43	10	10	34	1.75
48854709--48854810	23	4.4	23	84	0	114	42	25	16	15	1.88
48854709--48854810	46	2.2	46	82	0	132	42	25	16	15	1.88
48854828--48855072	23	10.7	23	67	0	94	42	20	15	22	1.89
48854827--48855072	46	5.3	46	85	0	258	41	20	15	22	1.89
48856373--48856576	29	7.0	29	75	5	153	38	13	25	22	1.91
48856373--48856546	87	2.0	87	85	4	235	38	14	25	21	1.91
48856433--48856576	58	2.5	58	85	3	182	38	13	25	22	1.91
48872554--48872579	12	2.2	12	100	0	52	42	26	15	15	1.87
48872768--48872820	24	2.2	24	93	3	90	52	22	7	16	1.69
48874163--48874234	29	2.4	30	80	11	85	40	6	12	40	1.70
48874224--48874282	31	1.9	31	85	0	82	33	11	13	40	1.81
48875350--48875395	23	1.9	24	83	16	60	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48875753--48875801	25	1.9	26	84	12	66	28	2	10	59	1.41
48882084--48882396	110	2.8	110	87	4	443	57	14	0	26	1.44
48890821--48890857	14	2.4	17	86	13	53	48	0	0	51	1.00
48891007--48891057	14	3.6	14	74	7	50	68	0	13	17	1.21
48891046--48891079	16	2.1	16	88	5	50	76	5	14	2	1.09
48892174--48892269	39	2.5	39	80	6	108	20	23	28	27	1.99
48901854--48901890	14	2.4	17	86	13	53	48	0	0	51	1.00
48902040--48902090	14	3.6	14	74	7	50	68	0	13	17	1.21
48902079--48902112	16	2.1	16	88	5	50	76	5	14	2	1.09
48902706--48902801	39	2.5	39	80	6	108	20	23	28	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182