genome.fa.s21.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  48  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15095248--15095274	12	2.2	12	100	0	54	37	14	0	48	1.45
15099115--15099168	25	2.2	25	86	6	74	22	14	5	57	1.58
15099884--15099909	8	3.2	8	100	0	52	88	0	0	11	0.52
15100863--15100921	7	8.0	7	78	21	59	72	0	11	15	1.11
15100871--15100921	14	3.5	14	82	10	66	74	0	11	13	1.07
15101131--15101168	14	2.8	14	96	4	69	36	13	21	28	1.91
15102593--15102777	44	4.2	43	68	11	133	29	18	24	27	1.98
15102489--15102698	44	4.8	44	68	13	126	32	18	22	26	1.97
15102302--15103480	132	9.0	132	91	2	1651	29	17	23	29	1.97
15102302--15103480	260	4.5	260	90	3	1689	29	17	23	29	1.97
15104407--15104441	16	2.3	15	90	5	52	0	14	5	80	0.89
15105388--15105551	51	3.2	51	93	0	283	34	13	22	29	1.92
15108329--15108386	25	2.4	24	77	11	66	34	3	6	55	1.44
15113629--15113682	21	2.6	21	91	5	83	29	35	9	25	1.87
15117498--15117636	42	3.2	42	77	7	120	30	25	17	26	1.97
15124110--15124227	33	3.6	33	78	11	134	40	14	8	36	1.76
15128458--15128487	10	3.0	10	95	0	51	86	0	13	0	0.57
15128459--15128488	15	2.1	14	93	6	51	90	0	10	0	0.47
15135217--15135268	26	2.0	26	100	0	104	34	23	15	26	1.94
15147471--15147507	18	2.1	18	89	0	56	32	29	0	37	1.58
15149260--15150086	3	275.7	3	100	0	1654	33	0	0	66	0.92
15151592--15151624	16	2.1	16	88	11	50	48	9	9	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15162568--15162913	171	2.0	171	98	0	674	29	13	13	43	1.83
15164545--15164868	86	3.8	86	78	8	288	41	13	12	32	1.82
15168441--15168531	47	2.0	47	85	10	127	37	18	23	20	1.94
15168433--15168541	22	4.6	24	80	13	111	39	17	23	19	1.92
15173473--15173507	17	2.1	17	89	5	54	57	8	17	17	1.64
15174553--15174710	41	3.9	41	78	6	167	20	18	26	34	1.96
15174553--15174707	82	1.9	82	82	5	197	20	18	26	34	1.96
15176252--15176289	18	2.2	17	86	9	51	21	7	2	68	1.28
15177518--15177711	99	2.0	95	90	6	300	22	13	12	52	1.73
15177537--15177711	95	1.8	97	88	5	230	22	13	13	50	1.76
15178639--15178687	20	2.5	19	87	12	73	59	2	4	34	1.28
15179254--15179346	40	2.3	38	85	7	114	41	1	2	54	1.19
15183298--15183346	24	2.0	26	84	8	66	2	16	6	75	1.09
15197109--15197141	9	3.8	9	96	4	59	12	0	9	78	0.95
15197176--15197217	18	2.3	19	83	4	50	19	9	4	66	1.38
15197184--15197222	19	2.1	19	85	9	53	17	7	7	66	1.40
15197525--15197588	24	2.6	24	76	16	60	32	10	1	54	1.45
15212283--15212316	10	3.5	10	88	4	52	11	38	8	41	1.73
15221306--15221332	7	3.9	7	100	0	54	29	14	29	25	1.95
15221307--15221344	14	2.8	14	88	4	51	31	21	21	26	1.98
15222111--15222170	21	2.9	21	85	11	72	36	3	0	60	1.14
15222114--15222184	10	6.8	10	75	13	63	39	2	0	57	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15222111--15222170	20	3.0	20	87	7	77	36	3	0	60	1.14
15223833--15223863	13	2.5	13	94	5	55	3	35	0	61	1.12
15226053--15226210	34	4.6	33	75	6	136	27	11	16	44	1.82
15229554--15229749	105	1.9	105	83	2	259	27	28	20	23	1.99
15251455--15251479	13	1.9	13	100	0	50	40	44	0	16	1.47
15251466--15251538	19	3.5	19	70	20	65	41	36	1	20	1.61
15252075--15252132	8	7.0	8	96	3	98	27	12	24	36	1.91
15252961--15253182	115	1.9	115	80	7	254	35	25	10	27	1.89
15253274--15253304	9	3.4	9	90	0	53	25	12	22	38	1.90
15253357--15253394	9	4.2	9	89	0	58	44	10	10	34	1.73
15254395--15254421	5	5.4	5	100	0	54	22	18	18	40	1.91
15256699--15256736	2	19.0	2	100	0	76	0	50	0	50	1.00
15260268--15260295	9	3.1	9	100	0	56	46	10	10	32	1.73
15261181--15261206	5	5.2	5	100	0	52	23	19	19	38	1.93
15266622--15266659	16	2.4	16	91	4	60	89	7	0	2	0.57
15266625--15266658	12	2.9	11	91	8	50	88	8	0	2	0.62
15267091--15267124	12	2.9	12	91	4	52	79	0	14	5	0.91
15267092--15267142	17	3.0	17	85	5	59	78	1	17	1	0.94
15267092--15267142	13	4.5	11	79	20	52	78	1	17	1	0.94
15268101--15268466	89	4.1	89	82	1	378	30	24	21	23	1.99
15268172--15268747	133	4.3	134	79	5	587	28	24	23	23	1.99
15268172--15268750	89	6.5	89	85	2	589	28	24	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15268163--15268681	222	2.3	220	85	2	664	28	25	22	23	1.99
15268880--15269080	88	2.3	87	78	5	208	25	20	26	26	1.99
15269016--15269174	45	3.5	44	79	6	167	30	18	24	26	1.98
15268700--15269121	220	1.9	221	79	5	469	27	19	25	27	1.99
15268967--15269174	44	4.6	44	78	5	168	29	19	24	26	1.98
15269303--15269412	44	2.5	44	87	0	148	28	20	20	30	1.98
15269344--15269469	44	2.9	44	84	5	141	31	19	21	26	1.97
15281496--15281522	7	3.9	7	100	0	54	88	0	11	0	0.50
15281494--15281527	17	2.1	16	88	5	50	88	0	11	0	0.52
15281963--15282081	40	2.9	40	79	9	100	23	25	29	21	1.99
15285258--15285429	47	3.7	47	79	6	170	24	22	18	34	1.96
15285252--15285429	93	1.9	94	80	5	209	25	22	18	33	1.97
15288115--15288317	101	2.0	101	100	0	406	33	0	23	41	1.61
15288155--15288312	49	3.2	49	65	21	137	34	1	22	41	1.62
15288322--15288443	23	5.3	22	63	27	65	32	13	28	25	1.93
15288300--15288490	47	4.1	47	93	0	310	32	9	29	27	1.89
15288307--15288536	94	2.4	94	86	2	311	32	10	30	26	1.90
15290793--15290856	31	2.1	31	96	0	119	31	26	15	26	1.96
15292567--15292884	79	4.0	79	99	0	618	35	5	16	42	1.70
15299638--15299671	15	2.2	16	89	5	52	35	5	26	32	1.81
15299880--15299941	5	12.2	5	85	10	72	35	16	25	22	1.94
15301717--15301767	21	2.4	21	100	0	102	23	3	19	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15302509--15302558	21	2.3	22	86	3	66	20	40	20	20	1.92
15304543--15304683	28	5.0	28	78	1	122	31	21	17	30	1.96
15304543--15304663	14	8.6	14	71	0	71	31	19	17	31	1.95
15310494--15310528	18	1.9	18	88	0	52	40	0	34	25	1.56
15311695--15311777	41	2.0	41	92	0	139	56	7	16	19	1.63
15311865--15311919	15	3.5	16	87	12	87	78	1	0	20	0.85
15311874--15311919	5	9.2	5	90	9	76	80	0	0	19	0.71
15314704--15314889	62	3.0	62	99	0	363	26	12	20	40	1.88
15317530--15317554	12	2.1	12	100	0	50	16	16	24	44	1.86
15320242--15320272	16	1.9	16	93	0	53	0	3	67	29	1.06
15321471--15321509	19	2.1	19	100	0	78	46	10	10	33	1.72
15324890--15324915	12	2.2	12	100	0	52	34	7	0	57	1.27
15326527--15326595	3	23.7	3	74	11	54	71	2	2	23	1.14
15326527--15326596	11	5.8	11	73	18	59	71	2	2	22	1.13
15326533--15326597	27	2.4	27	78	16	73	70	3	3	23	1.15
15326670--15326694	5	5.0	5	100	0	50	80	0	0	20	0.72
15328141--15328684	44	11.9	44	67	12	177	30	20	17	32	1.95
15347625--15348069	239	1.9	240	97	1	849	37	17	16	28	1.92
15363862--15363901	20	2.0	20	85	9	55	25	0	15	60	1.35
15371334--15371693	114	3.2	113	79	6	363	25	21	25	27	1.99
15371607--15371780	73	2.4	72	78	8	181	24	22	26	27	2.00
15372058--15372101	18	2.4	18	100	0	88	22	0	50	27	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15372929--15372989	32	2.0	32	87	6	90	52	8	1	37	1.41
15373222--15373267	21	2.2	21	96	0	83	15	4	36	43	1.66
15373251--15373321	31	2.4	29	85	4	88	21	1	39	38	1.62
15375023--15375134	16	7.0	16	70	20	83	31	14	18	35	1.91
15375027--15375134	28	3.4	34	76	18	140	32	13	17	36	1.89
15376525--15376832	47	6.6	47	99	0	598	38	12	4	44	1.63
15376771--15376882	33	3.2	33	70	20	111	38	13	3	44	1.61
15376766--15376903	71	1.9	71	100	0	276	38	12	4	44	1.62
15376953--15377061	49	2.2	49	85	6	150	46	15	0	37	1.46
15377003--15377108	17	6.4	17	70	20	82	46	12	0	41	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182