genome.fa.s21.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  121  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37267531--37267579	22	2.2	22	78	7	55	51	4	6	38	1.46
37273734--37273828	45	2.1	45	88	7	140	28	20	22	29	1.98
37284033--37284080	16	3.0	16	96	0	87	29	18	12	39	1.88
37289834--37289940	53	2.0	54	88	1	162	42	10	8	38	1.69
37290065--37290131	33	2.0	33	100	0	134	34	14	11	38	1.84
37297578--37297631	19	2.8	19	94	0	99	37	9	16	37	1.81
37297567--37297638	38	2.0	36	84	10	94	37	9	16	36	1.82
37298114--37298700	293	2.0	292	96	1	1086	29	9	7	53	1.60
37301196--37301222	13	2.1	13	100	0	54	44	22	0	33	1.53
37302382--37302413	15	2.1	15	100	0	64	28	6	18	46	1.73
37310124--37310212	30	3.0	30	88	0	97	31	16	25	25	1.97
37310320--37310422	26	4.0	26	81	0	125	38	25	20	15	1.92
37310328--37310427	52	1.9	53	87	6	150	38	23	20	19	1.94
37310658--37310802	27	5.4	27	88	3	184	22	21	14	41	1.89
37318182--37318240	25	2.4	24	81	13	66	27	6	18	47	1.74
37320063--37320104	17	2.5	17	84	7	50	38	0	4	57	1.20
37320710--37320758	20	2.5	20	100	0	98	28	26	0	44	1.54
37320642--37320820	96	1.9	96	82	8	229	27	28	0	43	1.60
37323412--37323656	89	2.7	90	82	10	274	35	18	8	36	1.83
37323761--37323887	19	6.7	19	76	13	120	70	1	0	28	0.97
37323762--37323878	10	12.6	9	76	12	103	69	1	0	29	0.99
37323816--37323897	10	8.8	9	83	12	60	68	2	1	28	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37323818--37323899	19	4.3	19	87	6	94	69	2	1	26	1.08
37324071--37324210	9	14.8	9	67	15	59	27	5	2	65	1.25
37324071--37324160	38	2.4	39	79	5	87	25	7	2	64	1.32
37324130--37324231	29	3.5	28	79	11	100	34	1	0	62	1.13
37324138--37324227	30	3.1	29	80	12	89	32	2	1	64	1.13
37324089--37324179	38	2.4	38	75	3	94	26	7	1	64	1.27
37324160--37324199	20	2.0	20	85	0	53	32	0	0	67	0.91
37324197--37324250	19	2.8	19	81	13	65	35	3	1	59	1.26
37324555--37324622	17	3.9	17	69	16	59	51	4	33	10	1.56
37324566--37324637	36	2.0	36	100	0	144	50	5	30	13	1.65
37326096--37326172	38	2.0	38	100	0	154	31	37	5	25	1.78
37331163--37331419	41	6.3	40	83	4	259	15	23	25	35	1.94
37331163--37331419	120	2.1	122	83	3	313	15	23	25	35	1.94
37331163--37331479	41	7.8	41	80	4	221	16	23	24	35	1.94
37331163--37331460	161	1.9	161	82	2	375	15	23	24	36	1.94
37331850--37331905	25	2.2	26	78	18	64	42	5	1	50	1.35
37331974--37332005	16	1.9	17	93	6	57	37	0	21	40	1.54
37332003--37332038	15	2.4	15	85	0	54	22	0	38	38	1.54
37332305--37332331	14	1.9	14	100	0	54	37	3	14	44	1.63
37333353--37333424	37	1.9	38	86	8	103	22	0	40	37	1.54
37333595--37333663	35	2.0	36	86	11	99	55	7	0	37	1.28
37341927--37342096	66	2.6	66	83	3	200	41	17	27	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37342077--37342157	21	3.9	21	85	0	81	35	17	43	3	1.67
37342327--37342635	43	7.2	42	75	10	216	25	19	28	26	1.99
37342327--37342574	85	2.9	85	78	8	263	26	16	29	27	1.97
37343286--37343312	3	9.0	3	100	0	54	33	0	0	66	0.92
37346389--37346494	30	3.6	29	81	6	131	33	9	29	28	1.88
37347869--37348100	40	5.8	40	93	1	376	25	29	21	24	1.99
37349832--37350012	30	6.0	30	80	1	184	33	13	25	26	1.94
37349814--37349978	61	2.7	61	86	0	215	35	13	24	25	1.93
37355833--37355862	15	2.0	15	93	0	51	6	23	0	70	1.11
37359301--37359384	43	2.0	43	92	0	141	26	22	2	48	1.62
37369491--37369536	20	2.3	20	88	0	74	30	8	32	28	1.87
37372919--37373141	5	44.6	5	84	1	277	37	4	20	37	1.73
37377028--37382433	47	115.0	47	99	0	10731	31	8	29	29	1.87
37382552--37382630	37	2.1	37	90	0	122	24	18	31	25	1.98
37384168--37384237	20	3.5	19	66	14	52	7	35	21	35	1.81
37384181--37384306	60	2.1	60	83	0	162	15	33	14	37	1.87
37397197--37397406	40	5.2	40	78	8	221	31	20	20	27	1.97
37397208--37397404	80	2.5	80	90	0	295	31	20	19	28	1.97
37397824--37397939	7	16.4	7	68	12	58	25	1	25	48	1.61
37397891--37397939	14	3.4	14	88	8	64	22	0	26	51	1.49
37397890--37397966	28	2.7	28	80	9	84	24	0	29	45	1.54
37397920--37397973	28	1.9	28	84	0	72	22	0	35	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37397936--37397977	21	2.0	21	86	9	59	28	0	35	35	1.58
37398017--37398069	14	3.7	15	87	7	74	20	0	45	33	1.52
37398017--37398069	7	7.4	7	81	12	63	20	0	45	33	1.52
37398409--37398457	19	2.5	19	90	3	71	75	8	2	14	1.12
37398588--37398708	42	2.9	40	74	14	102	30	18	23	27	1.98
37406028--37406064	12	3.0	13	84	11	51	29	40	18	10	1.85
37411907--37412177	43	6.3	43	77	9	259	26	16	24	33	1.96
37411907--37412177	86	3.1	87	82	5	336	26	16	24	33	1.96
37411935--37412177	129	1.9	128	82	6	303	26	16	23	33	1.96
37413805--37413871	30	2.2	30	78	7	73	35	1	1	61	1.15
37414705--37414832	43	3.0	43	91	3	195	28	34	18	18	1.95
37415832--37415946	53	2.2	53	98	0	221	41	13	20	24	1.88
37421571--37422053	242	2.0	242	99	0	948	38	14	18	27	1.90
37424051--37424210	75	2.1	79	89	5	249	30	10	15	44	1.79
37424879--37425038	82	2.0	82	88	2	241	45	28	1	25	1.61
37424890--37425063	82	2.1	82	80	3	197	47	25	1	26	1.59
37425055--37425132	14	5.7	13	72	14	50	37	38	0	24	1.56
37425138--37425169	14	2.2	15	94	5	57	37	31	0	31	1.58
37425524--37425846	41	7.9	41	92	0	511	28	25	21	24	1.99
37425866--37425923	27	2.1	27	96	0	107	6	12	31	50	1.66
37426006--37426031	12	2.2	12	100	0	52	46	30	15	7	1.74
37430646--37430691	23	2.0	23	87	8	67	43	2	0	54	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37439928--37440626	71	9.9	71	76	8	268	34	21	17	27	1.95
37439906--37440625	142	5.1	142	75	7	507	34	21	17	27	1.95
37439973--37440709	213	3.5	209	78	6	698	33	22	17	27	1.96
37440388--37440714	140	2.3	141	79	2	343	32	23	17	26	1.97
37440745--37440857	58	1.9	58	83	3	147	39	17	12	30	1.87
37441942--37442004	31	2.0	31	93	0	108	42	28	11	17	1.83
37449293--37449374	43	1.9	43	89	0	128	17	29	31	21	1.96
37449645--37449709	32	2.0	32	96	0	121	44	16	18	20	1.87
37451647--37451698	24	2.2	24	89	0	77	34	21	25	19	1.96
37457749--37457799	25	2.0	25	84	0	66	33	23	29	13	1.93
37457766--37457835	23	2.9	24	81	8	63	34	21	25	18	1.96
37459393--37459529	37	3.7	37	79	6	143	29	12	19	37	1.89
37460860--37461092	63	3.7	62	81	4	220	29	27	17	25	1.97
37465521--37465568	23	2.0	23	84	4	60	37	10	10	41	1.74
37465582--37465825	23	10.5	23	73	7	197	42	16	17	22	1.89
37465553--37465825	70	3.9	70	77	8	232	42	17	16	23	1.88
37465595--37465828	47	5.0	47	79	4	224	42	16	17	23	1.88
37473381--37473603	23	9.6	23	76	5	189	41	17	16	24	1.89
37473365--37473556	69	2.7	69	89	2	276	41	19	14	24	1.89
37473476--37473613	47	2.9	47	86	2	188	39	17	17	25	1.91
37478447--37478588	62	2.3	62	93	2	241	25	30	22	21	1.99
37479112--37479149	11	3.5	11	82	13	51	78	2	18	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37480123--37480165	22	1.9	23	90	4	70	48	0	2	48	1.14
37480519--37480564	18	2.6	18	89	3	67	50	4	0	45	1.21
37480540--37480587	21	2.2	22	88	3	71	45	0	2	52	1.12
37481444--37481500	24	2.4	24	84	0	69	54	0	7	38	1.28
37481465--37481518	24	2.2	24	87	6	74	59	0	1	38	1.08
37483162--37483251	38	2.4	38	82	0	108	36	15	16	31	1.90
37484815--37484853	20	2.0	20	85	10	53	61	0	2	35	1.10
37495976--37496006	16	1.9	16	100	0	62	48	12	12	25	1.77
37496330--37496446	50	2.4	50	84	4	139	25	24	17	31	1.97
37496327--37496446	49	2.4	49	83	4	143	25	24	18	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182