genome.fa.s21.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  100  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30118905--30118977	29	2.5	29	90	0	119	46	13	9	30	1.75
30120156--30120261	56	1.9	56	82	5	135	24	24	15	35	1.94
30120523--30120587	23	2.9	22	90	6	103	44	20	12	23	1.84
30120809--30120843	13	2.7	13	90	0	52	42	11	0	45	1.40
30121662--30121755	48	2.0	48	95	2	172	22	11	9	56	1.64
30124170--30124337	84	2.0	84	100	0	336	35	21	15	27	1.94
30128145--30128185	21	2.0	21	85	0	55	65	2	24	7	1.30
30128219--30128285	33	1.9	33	82	8	80	46	8	31	13	1.74
30132341--30132535	89	2.2	89	100	0	390	33	17	17	31	1.94
30146926--30146951	6	4.3	6	100	0	52	15	0	0	84	0.62
30155609--30156021	206	2.0	207	96	0	756	46	13	18	21	1.83
30156759--30157027	123	2.2	123	99	0	529	18	18	24	38	1.93
30159319--30159442	62	2.0	62	98	0	239	58	9	16	14	1.61
30171738--30171764	14	1.9	14	100	0	54	29	14	22	33	1.94
30174109--30174177	33	2.2	33	94	5	124	23	11	26	39	1.88
30180995--30181038	17	2.6	16	85	7	52	9	25	6	59	1.53
30180996--30181043	17	2.9	16	84	6	51	10	27	6	56	1.57
30187943--30187986	20	2.2	19	84	8	52	31	11	34	22	1.90
30191271--30191297	13	2.1	13	100	0	54	29	7	0	62	1.22
30193027--30193080	20	2.8	20	88	2	74	25	24	18	31	1.97
30202798--30202848	21	2.4	22	83	6	61	9	21	0	68	1.18
30202810--30202870	21	2.9	21	76	16	63	6	21	0	72	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30206055--30206146	46	2.0	46	95	0	166	25	22	21	30	1.99
30206620--30206654	10	3.5	10	92	0	52	20	0	11	68	1.20
30206616--30206654	20	2.0	20	94	0	69	23	0	10	66	1.22
30206820--30206866	24	1.9	25	82	4	60	42	4	25	27	1.73
30225086--30225129	12	3.6	12	84	6	52	75	4	2	18	1.09
30225174--30225223	14	3.4	14	74	15	55	80	2	10	8	0.99
30225173--30225241	29	2.3	29	83	14	88	75	2	11	10	1.15
30225173--30225244	30	2.4	29	80	13	85	75	2	12	9	1.16
30226095--30226126	15	2.1	16	94	5	57	71	0	21	6	1.07
30226125--30226254	42	2.8	46	82	13	169	58	3	25	13	1.49
30226167--30226236	24	3.2	24	69	23	80	65	4	21	8	1.37
30226178--30226246	18	3.5	18	72	27	68	66	4	20	8	1.36
30226161--30226248	42	2.1	42	100	0	176	63	4	22	9	1.42
30226277--30226321	21	2.3	18	85	11	54	55	0	26	17	1.42
30230064--30230366	40	7.6	40	89	2	387	24	20	28	27	1.99
30232724--30232816	27	3.5	27	78	11	111	43	16	21	19	1.88
30232816--30232883	28	2.5	28	85	2	93	44	20	20	14	1.87
30233238--30233319	27	3.0	28	85	3	112	20	21	21	35	1.96
30238093--30238174	35	2.3	35	89	2	128	43	32	9	13	1.77
30239734--30239777	22	1.9	22	86	9	61	38	15	2	43	1.60
30247427--30247470	22	1.9	22	86	9	61	38	13	2	45	1.56
30247954--30247982	14	2.0	15	93	6	51	13	6	3	75	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30254058--30254104	25	1.9	24	87	12	69	34	8	0	57	1.29
30260506--30260736	27	8.4	27	83	8	254	42	19	20	17	1.89
30260506--30260736	54	4.2	54	84	5	295	42	19	20	17	1.89
30261055--30261143	28	3.2	28	82	6	110	25	24	20	29	1.99
30273514--30273568	21	2.7	20	77	8	65	38	3	3	54	1.36
30277066--30277094	13	2.3	13	94	5	51	27	10	0	62	1.28
30278520--30278556	9	4.1	9	92	0	65	45	13	10	29	1.77
30278770--30278829	30	2.0	31	83	3	77	20	38	1	40	1.62
30278904--30278964	19	3.4	19	76	15	58	22	31	0	45	1.53
30279867--30279934	22	3.0	22	80	6	57	69	5	4	20	1.28
30284769--30284821	23	2.2	24	96	3	99	41	24	3	30	1.72
30290500--30290572	37	2.0	37	89	5	112	47	12	21	17	1.80
30290626--30290979	176	2.0	176	97	1	665	29	18	18	33	1.95
30293678--30293730	22	2.3	24	84	9	67	50	7	1	39	1.41
30294878--30295184	150	2.0	150	95	0	551	40	6	35	17	1.75
30295189--30295305	36	3.2	36	85	0	153	30	8	30	29	1.87
30297761--30297825	33	2.0	33	100	0	130	9	26	18	46	1.79
30297762--30297816	17	3.3	17	69	5	58	9	25	20	45	1.80
30303108--30303149	18	2.4	17	84	7	57	45	2	14	38	1.58
30305310--30305349	19	2.0	20	85	4	55	70	2	0	27	1.01
30305410--30305452	17	2.5	18	81	7	54	65	0	4	30	1.13
30305409--30305447	18	2.2	18	86	9	53	69	0	5	25	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30305435--30305481	24	2.0	24	91	0	76	51	0	2	46	1.13
30308867--30308907	20	2.0	20	86	9	57	39	2	4	53	1.35
30309431--30309560	49	2.6	50	84	3	183	32	13	22	31	1.93
30309618--30309664	23	2.0	23	100	0	94	21	17	25	36	1.94
30316910--30316977	32	2.1	32	88	0	100	45	11	13	29	1.79
30318496--30318601	4	26.5	4	94	0	185	22	0	27	50	1.50
30327965--30328236	125	2.2	125	94	2	476	30	15	22	32	1.94
30331182--30331267	29	3.0	29	94	0	145	25	2	27	44	1.66
30331235--30331282	23	2.1	22	88	7	69	27	2	27	43	1.66
30331488--30331544	24	2.4	23	82	8	69	3	22	28	45	1.69
30338189--30339074	29	30.0	29	84	6	1109	32	1	22	43	1.63
30339956--30339987	7	4.6	7	100	0	64	59	12	0	28	1.34
30340736--30340769	15	2.3	15	90	5	52	67	5	0	26	1.13
30340867--30340922	28	2.0	28	89	6	87	57	1	0	41	1.09
30340867--30340924	29	2.0	28	87	9	82	56	1	0	41	1.09
30340958--30341008	22	2.3	21	83	9	66	33	0	33	33	1.58
30340961--30341060	52	1.9	52	91	0	164	38	0	32	30	1.58
30341013--30341068	22	2.5	22	97	2	103	41	0	30	28	1.57
30352608--30352677	21	3.3	21	71	0	68	12	22	18	45	1.83
30352553--30352700	42	3.5	42	78	3	138	16	22	17	43	1.87
30352603--30352705	21	4.9	20	67	7	62	13	23	19	43	1.86
30355039--30355236	50	3.8	50	79	6	173	23	26	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30365559--30365720	15	10.9	15	67	21	58	43	2	3	50	1.31
30365495--30365723	120	1.9	120	97	0	431	42	2	4	49	1.37
30365688--30365729	15	2.7	16	82	14	52	45	0	2	52	1.13
30366106--30366340	50	4.6	50	81	5	215	21	26	22	29	1.99
30368749--30368879	54	2.4	54	82	6	160	22	10	25	41	1.86
30372217--30372283	21	3.2	21	61	23	50	26	19	14	38	1.91
30372207--30372290	42	2.0	42	97	0	159	27	19	15	38	1.91
30372613--30372638	13	2.0	13	100	0	52	23	46	7	23	1.78
30376552--30376604	18	2.9	18	76	15	56	9	18	1	69	1.25
30384701--30384779	40	1.9	42	87	5	117	34	1	0	64	1.02
30389274--30389342	22	2.9	21	76	21	57	21	5	0	72	1.05
30389306--30389352	12	3.9	12	76	17	53	23	6	0	70	1.10
30389276--30389344	17	4.1	17	71	16	63	20	5	0	73	1.03
30389276--30389352	24	3.1	25	77	17	81	20	6	0	72	1.06
30390101--30390287	101	1.8	100	82	7	241	27	16	24	31	1.96
30390275--30390324	16	3.1	16	83	11	57	78	2	2	18	0.95
30393474--30393660	101	1.8	100	82	7	241	27	16	24	31	1.96
30393648--30393697	16	3.1	16	83	11	57	78	2	2	18	0.95
30394808--30394883	25	2.8	27	82	9	93	36	38	9	15	1.80
30401488--30402750	132	9.6	132	94	0	2193	25	23	20	30	1.98
30410792--30410837	24	1.9	24	86	0	65	10	26	17	45	1.81
30414878--30414920	16	2.5	17	81	7	52	53	4	6	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30415478--30415521	19	2.2	20	84	4	54	9	47	31	11	1.71
30417547--30417582	15	2.5	14	86	8	54	44	0	11	44	1.39
30420875--30420960	13	6.5	13	70	16	52	45	2	20	31	1.64
30420908--30420958	14	3.8	14	74	7	52	43	1	21	33	1.64
30420895--30420959	27	2.4	27	92	5	105	40	3	23	33	1.70
30420908--30420990	27	3.1	27	81	10	82	45	1	18	34	1.57
30424620--30424674	28	2.0	28	96	0	101	29	20	5	45	1.73
30433664--30433739	31	2.5	30	80	6	73	56	1	5	36	1.30
30433885--30433931	17	2.8	17	74	3	51	31	0	0	68	0.90
30433884--30433935	16	3.1	17	73	15	54	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182