genome.fa.s21.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  156  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47991439--47991723	85	3.4	85	87	0	401	22	15	25	36	1.94
47991446--47991715	43	6.4	42	73	9	210	21	14	26	37	1.93
48002068--48002492	214	2.0	214	82	4	518	35	16	20	26	1.94
48008227--48008302	27	2.8	27	87	0	107	27	27	18	26	1.98
48012368--48012399	14	2.3	14	94	0	55	21	12	31	34	1.91
48029884--48029926	20	2.2	20	100	0	86	74	0	9	16	1.06
48034619--48034644	4	6.5	4	100	0	52	76	0	23	0	0.78
48036624--48036663	20	2.0	20	90	0	62	22	7	2	67	1.28
48047044--48047077	16	2.1	16	100	0	68	0	32	17	50	1.47
48048310--48048351	22	2.1	19	86	13	57	45	2	0	52	1.13
48049072--48049127	25	2.2	24	79	17	69	33	1	1	62	1.16
48072968--48073090	57	2.1	59	85	8	173	44	8	21	25	1.79
48074068--48074098	5	6.2	5	92	0	53	0	35	0	64	0.94
48074718--48074824	55	1.9	55	83	7	137	43	24	9	22	1.82
48083663--48083687	13	1.9	13	100	0	50	24	12	16	48	1.79
48084985--48085077	23	4.0	22	80	5	87	22	15	24	37	1.93
48088727--48088951	27	8.3	27	86	2	265	41	21	14	22	1.89
48088687--48088950	54	4.9	54	85	1	298	42	20	14	22	1.88
48088687--48088964	27	10.3	26	82	7	218	42	19	14	22	1.88
48088683--48088964	81	3.5	81	78	6	284	43	19	14	22	1.87
48088945--48089000	27	2.1	27	86	0	76	37	19	16	26	1.92
48089914--48089977	13	4.9	13	84	0	83	32	26	10	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48092199--48092233	18	1.9	18	94	0	61	65	8	5	20	1.40
48093238--48093267	12	2.5	12	94	0	51	23	40	30	6	1.80
48103530--48103569	16	2.6	15	80	7	53	62	7	30	0	1.23
48112128--48112158	13	2.4	13	94	0	53	45	3	22	29	1.68
48118126--48118201	27	2.8	27	82	4	91	23	21	14	40	1.90
48118207--48118382	45	3.9	44	79	5	172	22	21	14	42	1.89
48121584--48121631	22	2.1	23	84	3	62	75	2	10	12	1.14
48122988--48123034	5	9.4	5	80	0	58	34	25	4	36	1.76
48126567--48126614	16	3.1	16	84	3	53	66	0	2	31	1.03
48128666--48128714	22	2.3	21	75	3	53	44	0	0	55	0.99
48140993--48141038	23	1.9	25	86	8	69	36	0	4	58	1.18
48141923--48142012	35	2.6	35	85	3	119	37	14	21	26	1.92
48149729--48149771	19	2.3	19	100	0	86	48	4	0	46	1.22
48151184--48151576	98	4.0	98	99	0	768	46	21	11	21	1.82
48161424--48161481	22	2.6	22	78	5	55	15	12	36	36	1.85
48166837--48166899	30	2.1	30	93	0	108	12	3	58	25	1.49
48169723--48169755	15	2.2	15	100	0	66	27	6	6	60	1.44
48170555--48170594	18	2.2	18	100	0	80	22	5	32	40	1.76
48179949--48179988	20	2.0	20	90	0	62	25	5	5	65	1.34
48185767--48185825	9	6.6	9	80	0	55	45	22	5	27	1.73
48185777--48185825	18	2.7	18	84	12	73	42	22	6	28	1.77
48185768--48185825	27	2.1	27	87	0	80	44	22	5	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48186065--48186108	18	2.4	18	92	0	70	11	2	45	40	1.53
48193500--48193578	24	3.3	23	77	11	79	35	22	25	16	1.95
48196917--48196960	18	2.5	18	85	3	54	18	2	2	77	0.98
48197745--48197962	111	2.0	109	82	8	262	34	14	23	27	1.94
48199304--48199341	18	2.1	19	85	5	51	18	26	2	52	1.58
48208868--48208910	22	2.0	22	85	0	59	34	20	13	30	1.92
48214629--48214680	24	2.2	24	82	0	59	30	17	15	36	1.91
48214736--48214868	34	3.9	34	81	0	149	28	22	23	25	1.99
48215038--48215132	14	6.8	14	77	4	93	28	16	16	37	1.91
48215244--48215306	29	2.2	29	83	11	76	26	12	36	23	1.91
48216276--48216301	11	2.4	11	100	0	52	7	23	0	69	1.14
48216275--48216303	11	2.5	12	88	11	51	6	24	0	68	1.13
48216653--48216741	20	4.6	19	73	20	78	65	2	1	31	1.12
48216668--48216740	30	2.5	30	80	4	78	65	2	1	30	1.15
48216654--48216742	39	2.3	39	83	9	103	64	2	1	32	1.13
48216653--48216742	9	9.4	9	74	11	65	64	2	1	32	1.13
48217059--48217099	16	2.3	18	88	12	59	29	0	0	70	0.87
48218477--48218517	15	2.7	15	92	0	64	51	24	0	24	1.49
48218472--48218524	15	3.6	15	84	2	63	49	30	0	20	1.50
48223843--48223872	2	15.0	2	100	0	60	50	0	50	0	1.00
48242403--48242483	42	1.9	42	87	5	119	27	22	20	29	1.99
48245459--48245523	30	2.1	31	83	13	82	55	9	0	35	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48252706--48252796	6	14.0	6	96	3	119	67	0	15	17	1.24
48252695--48252796	12	7.7	13	90	8	129	66	0	15	17	1.25
48254930--48254983	24	2.2	24	90	0	81	27	16	18	37	1.93
48256948--48257049	51	2.0	51	100	0	204	49	7	13	29	1.70
48258745--48258790	7	6.6	7	97	0	83	41	10	30	17	1.84
48258766--48258888	51	2.4	51	95	0	219	33	14	22	29	1.94
48264838--48265057	110	2.0	110	99	0	431	31	15	15	37	1.88
48265243--48265609	183	2.0	183	99	0	725	34	13	15	36	1.87
48269365--48269509	23	6.2	23	85	3	191	27	13	19	40	1.88
48269365--48269520	71	2.2	69	84	4	179	28	13	19	38	1.89
48274226--48274275	22	2.4	22	86	6	77	22	10	18	50	1.76
48275736--48275983	50	4.8	51	80	7	236	24	27	20	27	1.99
48277467--48277491	13	1.9	13	100	0	50	32	4	24	40	1.73
48278601--48278726	43	2.9	42	79	14	141	22	19	27	30	1.97
48280441--48280784	102	3.4	101	88	2	478	29	15	25	29	1.96
48280441--48280783	51	6.8	50	79	5	368	28	16	25	29	1.96
48282719--48282864	23	6.2	22	81	10	123	28	12	18	40	1.87
48282717--48282840	47	2.6	48	83	7	146	29	12	16	41	1.85
48282821--48282873	23	2.3	23	96	0	97	22	15	26	35	1.93
48289346--48289446	43	2.3	43	83	3	123	37	21	18	21	1.94
48289474--48289655	42	4.4	41	71	8	143	36	18	19	25	1.94
48291547--48291603	11	5.2	11	74	16	55	54	1	1	42	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48297708--48297771	33	1.9	34	87	6	96	43	17	4	34	1.69
48298665--48298742	23	3.5	22	94	5	138	20	8	26	43	1.81
48299929--48300110	95	1.9	96	94	1	321	49	6	7	36	1.58
48299929--48300110	48	3.8	48	94	1	321	49	6	7	36	1.58
48303289--48303497	92	2.3	91	86	5	278	45	3	3	46	1.39
48303425--48303472	26	1.9	25	84	16	64	45	0	2	52	1.12
48303513--48304045	120	4.4	120	98	0	1005	42	2	5	50	1.36
48303638--48303689	15	3.6	15	80	12	56	44	0	1	53	1.11
48303758--48303809	15	3.6	15	80	12	56	44	0	1	53	1.11
48303878--48303929	15	3.6	15	80	12	56	44	0	1	53	1.11
48304007--48304048	15	2.7	16	82	14	52	45	0	2	52	1.13
48303998--48304039	15	2.9	15	82	10	52	47	0	0	52	1.00
48303982--48304295	157	2.0	154	93	1	529	47	4	3	45	1.38
48304151--48304185	18	2.0	17	88	5	52	45	0	0	54	0.99
48304418--48304453	16	2.2	16	95	0	63	38	33	0	27	1.57
48306740--48306796	28	2.0	28	100	0	114	36	7	14	42	1.72
48309324--48309500	50	3.6	50	79	3	171	28	22	27	22	1.99
48309710--48309752	20	2.2	20	87	8	61	58	2	27	11	1.46
48313927--48313961	17	2.0	18	88	5	54	14	42	25	17	1.86
48318935--48318971	18	2.1	19	90	10	60	29	13	0	56	1.37
48328753--48328796	23	2.0	22	81	4	52	9	81	2	6	0.94
48328769--48328801	17	1.9	17	93	0	57	9	87	0	3	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48333393--48333437	23	1.9	24	86	4	65	20	2	51	26	1.59
48333511--48333588	34	2.2	34	82	10	95	29	24	24	21	1.99
48335799--48335840	17	2.6	16	92	7	68	35	0	0	64	0.94
48342264--48342411	72	2.1	72	86	0	206	21	27	22	28	1.99
48344562--48344620	29	2.0	29	100	0	118	13	13	27	45	1.81
48351932--48351977	24	1.9	24	82	8	58	32	23	28	15	1.95
48367132--48367173	15	2.9	15	82	10	52	47	0	0	52	1.00
48367395--48367432	16	2.4	16	90	0	58	34	34	0	31	1.58
48378587--48378638	17	2.9	17	80	11	50	57	15	9	17	1.64
48379259--48379291	16	2.1	16	88	11	50	69	3	0	27	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182