genome.fa.s21.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  57  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17594000--17594039	19	2.1	19	85	0	53	32	0	7	60	1.25
17596220--17596271	12	3.4	17	73	26	62	61	7	7	23	1.49
17596220--17596275	29	2.0	29	92	3	96	60	7	8	23	1.51
17599614--17599665	15	3.6	15	80	12	56	53	1	0	44	1.11
17599561--17599790	120	1.9	120	92	1	390	49	5	3	41	1.42
17599831--17599891	28	2.2	28	85	5	81	50	3	0	45	1.17
17605113--17605175	26	2.4	26	82	10	76	58	4	3	33	1.35
17609969--17610007	19	2.1	18	85	4	51	20	7	5	66	1.36
17609950--17610002	21	2.7	20	83	11	65	22	3	1	71	1.12
17624894--17624995	51	2.0	50	94	1	177	28	13	23	33	1.93
17627681--17627759	26	3.2	26	68	26	80	54	6	0	39	1.26
17627666--17627759	48	2.0	48	91	0	152	53	7	1	38	1.36
17629687--17629826	45	3.2	44	64	8	113	30	22	24	22	1.99
17629686--17629855	88	1.9	88	85	0	232	28	23	24	23	1.99
17629837--17629954	44	2.6	45	80	6	141	27	16	27	27	1.97
17629983--17630181	88	2.3	88	84	5	251	29	21	24	24	1.99
17629686--17630220	88	6.1	87	69	12	191	29	20	23	25	1.99
17630185--17630562	44	8.6	44	73	4	260	26	17	27	28	1.98
17630181--17630393	88	2.4	88	96	0	399	25	15	29	30	1.95
17630181--17630588	88	4.6	88	78	7	341	27	18	25	28	1.98
17630493--17630588	44	2.2	44	83	3	122	27	19	21	31	1.98
17630606--17631285	50	13.6	50	72	3	463	34	22	19	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17630577--17631285	100	7.1	100	86	0	936	33	22	19	24	1.97
17631614--17632013	99	4.0	99	99	0	791	43	32	4	19	1.71
17637240--17637495	52	4.9	52	99	0	494	33	15	24	26	1.95
17637469--17637578	37	3.0	37	89	2	170	35	15	23	25	1.94
17638813--17638861	17	2.8	18	84	6	64	14	4	6	75	1.14
17638818--17638867	17	2.9	17	81	3	55	14	4	6	76	1.13
17640855--17640912	29	2.1	26	87	9	80	70	8	0	20	1.13
17641304--17641332	3	9.7	3	100	0	58	31	0	0	68	0.89
17642548--17642585	3	12.7	3	100	0	76	31	0	0	68	0.90
17643428--17643452	2	12.5	2	100	0	50	52	48	0	0	1.00
17646267--17646292	2	13.0	2	100	0	52	0	0	50	50	1.00
17646532--17646581	23	2.2	22	82	10	57	34	4	2	60	1.27
17654862--17654887	13	2.0	13	100	0	52	7	0	30	61	1.24
17656403--17656448	20	2.3	20	84	0	56	36	13	4	45	1.63
17657385--17657437	23	2.2	24	80	3	63	24	1	3	69	1.15
17659007--17659031	4	6.2	4	100	0	50	72	0	0	28	0.86
17659143--17659218	38	2.1	36	85	9	100	43	0	17	39	1.49
17660684--17660730	26	1.9	25	87	12	71	59	8	0	31	1.27
17660690--17660747	26	2.1	28	81	15	68	63	6	1	27	1.29
17663922--17663978	21	2.7	21	80	0	69	22	17	22	36	1.94
17664365--17664520	78	2.0	78	94	0	276	32	15	23	28	1.95
17672277--17672449	29	6.0	29	88	0	247	27	16	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17672277--17672449	87	2.0	87	90	0	274	27	16	23	32	1.96
17672428--17672470	20	2.2	20	95	0	77	37	20	11	30	1.89
17672486--17672914	28	15.1	28	77	5	315	29	20	20	30	1.97
17672612--17672792	90	2.0	90	79	4	195	31	19	19	29	1.97
17675264--17675631	184	2.0	184	97	0	700	34	16	13	36	1.87
17676236--17676277	10	4.2	10	81	9	50	57	2	0	40	1.12
17677224--17677279	27	2.1	27	96	0	103	30	7	23	39	1.81
17679217--17679385	84	2.0	84	95	0	302	24	15	28	31	1.95
17682351--17682392	16	2.7	16	88	3	59	33	23	2	40	1.68
17692715--17692816	52	2.0	52	92	0	168	30	20	35	13	1.92
17695373--17695411	20	1.9	21	89	5	62	5	28	0	66	1.12
17696312--17696374	3	22.0	3	75	15	62	4	28	0	66	1.12
17696309--17696374	17	3.9	17	84	7	89	4	28	0	66	1.11
17696318--17696374	11	5.1	11	79	12	62	3	29	0	66	1.08
17696320--17696374	20	2.8	21	81	10	71	3	29	0	67	1.08
17696300--17696371	34	2.2	33	92	2	117	5	29	0	65	1.15
17699401--17699457	25	2.2	25	76	11	62	64	3	0	31	1.10
17699648--17699704	22	2.6	22	80	0	60	64	12	8	14	1.48
17718837--17718901	14	4.6	14	84	3	67	36	32	0	30	1.58
17718844--17718880	7	5.3	7	86	0	56	35	35	0	29	1.58
17719065--17719093	8	3.8	8	90	9	51	37	41	0	20	1.53
17719065--17719093	15	1.9	15	100	0	58	37	41	0	20	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17719099--17719150	22	2.4	22	81	9	63	34	38	1	25	1.67
17719075--17719143	36	1.9	36	93	0	120	33	39	1	26	1.65
17719136--17719175	21	2.0	21	90	5	64	35	40	2	22	1.68
17718671--17719267	301	2.0	297	84	6	787	41	26	2	29	1.67
17728735--17728773	21	1.9	21	84	5	53	38	2	0	58	1.12
17735164--17735223	30	2.0	31	86	3	86	43	0	36	20	1.52
17735957--17735993	17	2.1	18	85	14	51	54	13	0	32	1.40
17738694--17738818	55	2.3	54	80	10	139	60	4	5	28	1.40
17738546--17738936	26	15.2	25	72	13	199	59	4	6	29	1.44
17740141--17740179	19	1.9	19	90	10	60	12	0	17	69	1.19
17741219--17741305	25	3.5	25	73	16	81	24	26	21	27	1.99
17749404--17749465	24	2.6	25	87	7	92	20	12	17	48	1.80
17751523--17751584	29	2.2	27	78	16	63	53	4	1	40	1.32
17755412--17755540	61	2.1	60	84	1	168	34	16	24	25	1.95
17756231--17756436	43	4.8	44	86	4	271	31	27	17	22	1.97
17756231--17756445	85	2.5	85	83	9	287	32	27	17	22	1.96
17756229--17756469	43	5.7	42	84	5	247	34	27	16	22	1.95
17756512--17756537	5	5.2	5	100	0	52	19	0	0	80	0.71
17761565--17761608	13	3.1	14	80	9	54	47	29	0	22	1.51
17761653--17761690	15	2.6	15	83	4	51	44	39	0	15	1.47
17761648--17761753	21	5.0	21	68	13	63	47	30	1	20	1.61
17761715--17761753	14	2.8	14	84	0	51	51	33	0	15	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17761959--17762162	73	2.8	73	93	0	336	25	28	19	25	1.99
17762083--17762337	113	2.2	114	83	4	320	27	28	19	25	1.98
17762271--17762378	41	2.6	41	95	2	191	29	30	19	20	1.97
17762359--17762524	73	2.3	72	88	3	242	28	27	16	27	1.97
17762312--17762711	187	2.1	187	90	0	620	27	27	18	26	1.98
17762535--17762930	73	5.4	73	85	0	522	26	25	18	29	1.98
17762425--17762638	114	1.9	114	87	0	311	27	27	18	26	1.98
17762535--17762930	219	1.8	219	89	0	621	26	25	18	29	1.98
17766491--17766529	14	2.8	14	84	0	51	38	10	20	30	1.86
17767252--17767297	24	2.0	24	84	12	62	34	4	15	45	1.66
17768183--17768716	266	2.0	267	95	0	971	29	12	12	45	1.79
17775018--17775140	45	2.7	45	79	9	126	30	18	25	26	1.98
17774981--17775249	44	6.1	43	74	10	163	31	17	22	28	1.97
17775260--17775661	181	2.2	179	80	7	431	32	18	19	29	1.96
17775538--17775705	44	3.9	44	78	3	157	30	19	19	29	1.97
17775824--17775962	44	3.1	44	69	10	120	28	25	23	22	1.99
17775774--17776077	89	3.4	88	83	4	362	27	22	23	26	1.99
17776155--17776354	44	4.6	44	71	15	153	28	20	25	27	1.99
17776041--17776428	131	2.9	131	88	1	571	29	20	24	26	1.99
17776872--17776913	19	2.3	19	84	8	52	40	7	19	33	1.78
17779734--17779773	19	2.1	18	86	13	53	37	7	12	42	1.71
17780690--17780728	17	2.4	17	91	4	62	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17785279--17785498	110	2.0	110	87	3	318	20	32	20	25	1.97
17786250--17786361	37	2.8	40	82	11	142	35	23	16	24	1.95
17786774--17786813	19	2.1	19	86	9	55	32	15	0	52	1.43
17790066--17790115	22	2.3	22	89	0	73	20	26	16	38	1.92
17793435--17793464	14	2.1	14	93	0	51	40	0	13	46	1.43
17793531--17793588	3	19.0	3	78	3	62	62	3	5	29	1.33
17795122--17795459	25	13.5	25	67	15	90	22	27	15	34	1.94
17795181--17795441	50	5.2	50	87	0	362	20	27	15	36	1.93
17799073--17799257	101	1.8	102	90	3	302	23	17	25	32	1.96
17799070--17799255	51	3.7	50	80	6	205	23	17	26	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182