genome.fa.s21.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  117  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35864716--35864740	2	12.5	2	100	0	50	0	0	48	52	1.00
35876088--35876183	30	3.2	30	83	5	131	43	17	9	29	1.80
35887928--35887971	20	2.3	19	88	4	61	6	20	4	68	1.31
35890458--35890750	50	5.9	50	82	2	304	23	29	19	27	1.98
35890468--35890751	99	2.9	99	79	4	313	23	29	19	27	1.98
35893006--35893039	16	2.1	16	100	0	68	23	0	0	76	0.79
35895377--35895480	49	2.1	49	92	0	172	30	7	10	50	1.65
35896590--35896632	21	2.0	21	86	8	61	34	0	6	58	1.25
35896648--35896721	10	7.9	10	68	14	50	41	0	1	56	1.07
35896597--35896954	120	3.0	118	94	2	612	41	0	4	53	1.27
35896688--35896855	41	4.2	41	64	21	111	40	0	3	55	1.22
35896774--35896842	14	5.2	13	73	11	50	39	0	1	59	1.06
35896645--35896860	26	7.5	28	70	15	120	40	0	3	55	1.20
35896901--35896936	18	2.0	18	100	0	72	38	0	0	61	0.96
35897173--35897221	16	3.1	16	90	0	80	26	30	4	38	1.75
35898300--35898341	22	1.9	22	95	0	75	28	16	26	28	1.97
35901421--35901456	17	2.2	17	90	5	56	2	11	11	75	1.16
35907270--35907294	11	2.3	11	100	0	50	32	32	0	36	1.58
35910145--35910245	41	2.5	40	87	4	148	41	11	15	30	1.84
35913090--35913141	21	2.4	21	83	3	59	50	30	1	17	1.57
35919973--35920049	37	2.1	38	85	7	104	36	22	0	41	1.54
35920025--35920078	27	2.0	27	86	10	76	37	22	0	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35922160--35922251	22	4.2	22	86	5	105	30	28	0	41	1.56
35922160--35922251	44	2.1	44	84	8	116	30	28	0	41	1.56
35922201--35922303	52	2.0	51	81	12	122	33	33	0	33	1.58
35922253--35922294	22	1.9	22	90	0	66	33	33	0	33	1.58
35922336--35922390	27	2.0	27	82	6	67	36	0	1	61	1.06
35924082--35924774	23	27.7	23	74	18	438	47	22	0	28	1.54
35924102--35924857	28	29.7	26	77	18	564	47	22	0	29	1.54
35924091--35924857	51	15.0	51	77	15	671	47	23	0	28	1.54
35924457--35924522	34	1.9	34	96	0	123	42	30	0	27	1.56
35924737--35924839	34	3.2	33	76	13	117	43	27	0	29	1.55
35924777--35924857	23	3.3	24	80	15	103	45	24	0	29	1.53
35924715--35924839	62	2.0	62	93	3	216	44	27	0	28	1.55
35924397--35924857	74	5.8	83	76	17	337	46	23	0	29	1.54
35926232--35926395	89	1.9	88	89	0	247	29	22	23	23	1.99
35930440--35930482	22	2.0	23	86	9	63	16	13	6	62	1.51
35935498--35935530	16	2.0	17	88	5	50	45	6	0	48	1.27
35937717--35937757	19	2.2	19	86	0	55	63	7	2	26	1.33
35938821--35938852	12	2.7	12	95	0	55	21	0	0	78	0.76
35939083--35939237	44	3.6	44	76	4	138	30	23	19	26	1.98
35939379--35939810	87	5.0	87	87	1	553	23	24	23	28	2.00
35940401--35940510	55	2.0	55	98	0	211	25	26	10	37	1.89
35942028--35942087	27	2.2	27	90	0	93	6	5	13	75	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35942036--35942078	21	2.0	21	86	0	59	6	4	13	74	1.19
35947016--35947056	19	2.2	19	86	0	55	63	7	2	26	1.33
35948105--35948138	16	2.2	15	89	5	50	17	0	2	79	0.86
35954321--35954346	7	3.7	7	100	0	52	42	0	11	46	1.40
35956775--35956847	20	3.3	20	78	16	74	41	1	0	57	1.07
35956781--35956834	23	2.3	22	84	9	63	38	1	0	59	1.08
35956780--35956856	22	3.5	22	79	10	77	40	2	0	57	1.13
35956812--35956863	20	2.6	21	85	8	65	40	1	0	57	1.10
35956975--35957021	14	3.5	13	80	11	51	40	2	2	55	1.24
35956987--35957060	22	3.1	23	72	16	62	36	2	4	56	1.32
35957326--35957359	9	3.7	9	88	4	50	85	0	2	11	0.71
35957388--35957429	18	2.3	18	87	0	57	50	2	4	42	1.36
35957396--35957430	18	1.9	18	94	0	61	42	2	2	51	1.31
35963038--35963098	22	2.8	22	90	5	88	63	0	0	36	0.94
35963053--35963136	37	2.2	37	83	10	100	63	0	1	35	1.03
35963093--35963136	23	1.9	23	86	9	63	59	0	2	38	1.10
35963030--35963158	58	2.2	58	82	6	145	60	1	1	36	1.16
35963177--35963201	13	1.9	13	100	0	50	76	8	0	16	1.02
35963219--35963258	19	2.0	20	85	4	55	80	5	7	7	1.03
35964103--35964182	37	2.2	37	81	4	90	57	5	5	32	1.42
35974053--35974099	23	2.1	23	84	4	60	46	4	10	38	1.58
35976199--35976227	11	2.5	12	88	11	51	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35980454--35980578	28	4.6	27	88	4	178	29	28	13	28	1.94
35980454--35980578	55	2.3	55	90	2	189	29	28	13	28	1.94
35983131--35983162	16	2.0	16	93	0	55	25	15	0	59	1.36
35983344--35983534	51	3.8	51	76	13	178	30	25	16	26	1.97
35983342--35983526	101	1.8	102	84	3	257	31	24	17	26	1.97
35985576--35985856	146	1.9	146	94	0	490	40	18	11	29	1.86
35987659--35987815	42	3.7	42	86	3	174	21	24	37	16	1.93
35987658--35987815	84	1.9	84	82	5	203	21	24	37	16	1.93
35989983--35990057	39	1.9	39	89	5	116	45	26	2	25	1.67
36005426--36005488	32	2.0	32	100	0	126	17	19	15	47	1.83
36014168--36014427	133	2.0	133	92	3	434	31	9	21	37	1.85
36025546--36025617	36	2.0	36	100	0	144	11	13	33	41	1.80
36026710--36026830	57	2.1	58	82	1	154	47	5	19	27	1.71
36031412--36031459	15	3.0	16	75	9	53	45	0	16	37	1.48
36031481--36031686	76	2.7	76	84	1	243	24	22	22	30	1.99
36031658--36031737	35	2.3	35	97	0	151	21	23	25	30	1.99
36042817--36043468	328	2.0	327	91	0	1054	35	12	24	26	1.92
36046306--36046347	14	3.0	14	92	0	75	42	2	26	28	1.67
36058742--36059126	125	3.1	126	88	2	542	28	17	15	38	1.90
36058742--36059126	126	3.1	127	88	2	553	28	17	15	38	1.90
36059229--36059308	34	2.4	34	82	4	117	46	16	1	36	1.55
36059372--36059435	22	2.8	23	79	9	69	46	34	3	15	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36067096--36067122	13	2.1	13	100	0	54	55	7	0	37	1.28
36070721--36070774	21	2.6	21	80	11	74	29	7	31	31	1.85
36070986--36071047	33	1.9	32	86	3	88	41	0	4	53	1.22
36077271--36077311	18	2.3	18	95	0	73	31	4	34	29	1.79
36083376--36083621	120	2.1	119	89	3	370	25	20	28	25	1.99
36083323--36083586	40	6.6	40	91	3	381	24	21	28	25	1.99
36088272--36088313	16	2.5	17	81	18	52	23	33	0	42	1.55
36089612--36089836	51	4.4	50	76	6	195	31	27	16	24	1.97
36092907--36093084	27	6.6	27	84	3	205	29	28	15	26	1.96
36092928--36093083	82	1.9	81	88	3	233	29	28	15	26	1.96
36100689--36100881	50	3.8	51	78	7	189	33	26	16	23	1.96
36100658--36100881	51	4.4	50	76	8	188	32	27	16	24	1.96
36102326--36102366	21	2.0	21	100	0	82	21	14	9	53	1.70
36108490--36108542	19	2.6	21	74	20	67	33	15	28	22	1.94
36108416--36108542	40	3.2	39	79	1	119	37	14	28	19	1.92
36109288--36109331	19	2.3	20	84	7	56	29	11	0	59	1.32
36113498--36113528	15	2.1	15	100	0	62	25	29	25	19	1.99
36115757--36115850	40	2.3	41	83	1	118	34	13	29	22	1.93
36119957--36120126	45	3.8	45	84	3	182	25	14	26	32	1.95
36120007--36120152	45	3.2	45	81	3	152	25	14	26	33	1.94
36136621--36136722	27	3.8	27	92	0	159	30	12	25	31	1.93
36137090--36137115	8	3.2	8	100	0	52	76	0	11	11	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36151525--36151627	54	1.9	54	95	0	188	16	20	24	38	1.92
36155209--36155280	27	2.6	27	84	6	83	26	16	25	31	1.96
36156067--36156403	43	7.8	43	89	2	370	32	27	15	24	1.95
36156070--36156377	86	3.6	86	89	1	456	32	27	15	24	1.95
36156075--36156403	130	2.5	129	87	1	471	33	27	14	24	1.95
36162138--36162216	9	9.0	9	76	8	65	31	1	21	45	1.60
36162273--36162356	9	9.2	9	82	7	107	38	0	17	44	1.50
36162273--36162397	18	6.9	18	76	12	121	36	0	16	47	1.46
36162755--36162902	66	2.2	66	89	0	215	50	12	2	33	1.55
36163057--36163091	9	3.9	9	96	0	61	2	8	77	11	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182