genome.fa.s21.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  27  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9059701--9059786	42	2.0	42	100	0	172	36	22	16	25	1.94
9063978--9064051	26	2.9	26	78	6	80	32	22	24	20	1.98
9065888--9065940	21	2.5	22	76	11	56	32	18	7	41	1.79
9068667--9068758	27	3.4	27	84	0	121	11	23	18	45	1.83
9069345--9069394	17	2.9	18	76	11	59	72	6	6	16	1.25
9070680--9070736	21	2.6	22	80	2	71	26	28	15	29	1.96
9073526--9073659	66	2.0	66	82	2	162	13	21	20	44	1.86
9078173--9078239	21	3.2	20	74	4	53	16	23	37	22	1.94
9078160--9078239	42	1.9	42	89	0	124	16	21	36	26	1.94
9078161--9078249	42	2.1	42	85	0	115	16	17	38	26	1.92
9083665--9083707	22	2.0	23	86	9	63	23	55	13	6	1.62
9085639--9086004	130	2.8	130	86	0	509	29	18	18	33	1.95
9085656--9086116	130	3.5	127	79	6	442	27	19	18	34	1.95
9091142--9091172	3	10.3	3	92	0	53	38	32	0	29	1.57
9097415--9097458	12	3.7	12	93	0	70	2	59	0	38	1.10
9097424--9097461	3	12.7	3	94	0	67	0	63	0	36	0.95
9101001--9101067	18	3.4	18	67	25	55	52	13	8	25	1.69
9100994--9101097	41	2.5	42	93	3	174	55	10	7	25	1.60
9106946--9107049	43	2.3	44	78	16	124	53	2	7	35	1.44
9107041--9107089	20	2.4	21	80	10	57	53	2	4	40	1.32
9114717--9114777	28	2.2	28	85	5	81	55	1	3	39	1.26
9114738--9114799	24	2.6	25	76	19	69	62	0	6	30	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9114895--9115015	61	2.0	61	93	0	206	43	15	20	19	1.87
9115334--9115427	37	2.5	37	96	0	170	25	21	26	26	1.99
9115613--9115683	16	4.4	17	75	13	69	32	4	23	39	1.74
9118335--9118390	25	2.3	25	82	17	73	46	1	0	51	1.11
9123846--9124165	163	2.0	163	94	0	561	37	11	17	33	1.85
9127444--9127484	14	2.8	15	85	7	66	43	0	0	56	0.99
9127603--9127667	32	2.0	32	82	5	78	44	13	7	33	1.73
9128124--9128182	21	2.8	22	80	7	61	22	0	8	69	1.15
9128153--9128201	26	2.0	26	88	8	75	30	0	6	63	1.19
9129845--9129869	13	1.9	13	100	0	50	40	0	4	56	1.18
9136262--9136289	6	4.7	6	100	0	56	17	0	0	82	0.68
9136265--9136311	22	2.1	22	85	14	62	19	2	0	78	0.85
9137776--9137805	15	2.0	15	93	0	51	50	0	10	40	1.36
9137772--9137834	27	2.3	26	78	10	72	39	0	9	50	1.35
9153139--9153253	60	1.9	60	92	0	194	17	26	19	36	1.94
9157963--9158016	20	2.8	19	75	10	56	75	9	1	12	1.11
9159272--9159325	20	2.8	19	75	10	56	75	9	1	12	1.11
9160768--9160796	14	2.1	14	100	0	58	51	6	6	34	1.55
9160999--9161058	31	2.0	31	83	9	79	38	8	3	50	1.49
9163585--9164283	356	2.0	355	86	2	983	36	16	22	24	1.94
9169932--9170386	44	10.1	44	76	10	350	33	18	20	28	1.95
9169932--9170405	132	3.5	131	77	9	398	33	18	19	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9174503--9174928	214	2.0	214	99	0	834	38	19	5	35	1.76
9177091--9177138	23	2.1	23	84	0	60	47	0	10	41	1.37
9177697--9177751	20	3.0	18	82	12	67	60	1	1	36	1.18
9177697--9177784	8	10.5	8	69	18	54	60	4	2	32	1.30
9184202--9184255	20	2.7	21	80	5	58	64	0	35	0	0.94
9184688--9185141	140	3.2	146	88	6	662	61	7	4	26	1.43
9184877--9185092	48	4.6	46	70	16	140	61	8	3	26	1.40
9185069--9185103	13	2.7	13	86	0	52	77	2	0	20	0.90
9185485--9186363	146	6.2	142	85	8	1077	59	8	5	26	1.48
9185674--9185894	47	4.7	47	70	15	143	61	8	3	26	1.42
9184347--9185931	797	2.0	791	98	0	3080	49	5	7	37	1.55
9185999--9186033	13	2.7	13	86	0	52	77	2	0	20	0.90
9185483--9186371	416	2.1	422	88	6	1345	59	8	5	26	1.48
9186285--9186458	86	2.0	87	81	11	207	60	5	8	24	1.48
9186055--9186731	371	1.8	374	89	3	1078	58	7	6	27	1.50
9186514--9186588	30	2.8	25	76	18	78	70	5	4	20	1.23
9185908--9186891	518	1.9	511	86	6	1421	58	7	6	26	1.51
9186427--9186895	146	3.2	145	87	4	657	57	7	7	27	1.52
9188101--9188249	75	2.0	75	95	1	271	25	12	22	39	1.89
9193253--9193409	78	2.0	78	97	0	296	50	12	0	36	1.41
9193411--9193452	22	1.9	22	90	9	68	2	28	0	69	1.01
9196972--9197059	43	2.0	43	93	0	149	38	19	9	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9197337--9197370	16	2.1	17	88	5	52	14	58	0	26	1.36
9201000--9201176	88	2.0	88	98	0	345	23	16	19	40	1.91
9201812--9201893	35	2.3	35	91	0	128	41	12	9	36	1.76
9202022--9202047	5	5.2	5	100	0	52	19	0	0	80	0.71
9221977--9222050	40	1.9	40	83	8	100	0	35	1	63	1.03
9229725--9229755	6	5.2	6	100	0	62	16	32	35	16	1.91
9235208--9235244	2	18.5	2	100	0	74	51	0	48	0	1.00
9238325--9238358	7	4.9	7	100	0	68	58	14	26	0	1.36
9238325--9238365	21	2.0	21	85	0	55	65	12	21	0	1.25
9245746--9245967	64	3.5	64	96	0	390	40	5	7	45	1.57
9245875--9245903	14	2.1	14	100	0	58	51	6	0	41	1.28
9245939--9245968	14	2.1	14	100	0	60	53	6	0	40	1.27
9247214--9247248	14	2.5	14	85	0	52	42	5	20	31	1.75
9247875--9247924	17	2.8	17	87	6	64	48	0	2	50	1.12
9247882--9247957	31	2.5	30	81	10	82	48	0	3	47	1.20
9248044--9248077	12	2.8	12	83	16	52	41	0	5	52	1.25
9248142--9248182	18	2.2	19	91	4	66	63	0	34	2	1.08
9251679--9251915	119	2.0	119	89	3	361	55	5	5	32	1.48
9252738--9252800	27	2.3	27	81	5	74	11	47	23	17	1.79
9264421--9264703	18	15.3	18	71	11	160	36	15	12	35	1.86
9264421--9264703	36	7.6	36	71	12	187	36	15	12	35	1.86
9264408--9264703	54	5.4	54	70	12	197	36	15	12	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9264502--9264703	72	2.8	71	80	5	228	37	15	11	35	1.84
9264860--9265046	45	4.2	45	90	0	275	41	20	18	19	1.90
9264860--9265046	90	2.1	90	92	0	311	41	20	18	19	1.90
9265455--9265501	5	9.2	5	90	4	67	38	23	0	38	1.55
9265855--9265915	21	2.9	21	79	13	63	47	18	0	34	1.49
9267108--9267162	25	2.1	26	83	6	67	1	25	5	67	1.22
9267162--9267205	9	5.0	9	81	13	56	56	2	0	40	1.11
9267173--9267214	18	2.3	18	100	0	84	61	4	0	33	1.17
9268652--9268719	20	3.7	18	79	12	59	61	1	1	35	1.14
9268712--9268760	25	1.9	25	83	4	62	46	4	0	48	1.20
9271871--9271911	17	2.4	17	88	8	57	56	2	0	41	1.13
9271908--9271954	17	2.7	17	77	12	51	70	2	4	23	1.16
9280563--9280602	19	2.1	20	86	9	57	27	0	5	67	1.11
9282441--9282467	3	9.0	3	100	0	54	0	33	0	66	0.92
9283207--9283246	21	2.0	20	90	5	62	52	2	0	45	1.14
9292389--9292424	15	2.4	15	85	0	54	50	0	13	36	1.43
9295448--9295472	13	1.9	13	100	0	50	80	4	8	8	1.03
9318298--9318337	3	13.3	3	100	0	80	32	0	0	67	0.91
9320030--9320180	40	3.8	40	82	8	177	28	19	23	28	1.98
9320609--9320673	22	2.9	22	86	2	85	24	3	47	24	1.66
9320743--9320791	14	3.4	14	76	15	55	22	0	38	38	1.54
9320739--9320859	29	4.2	28	71	15	88	22	0	38	38	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9320751--9320860	42	2.6	43	80	9	102	22	0	39	38	1.55
9321274--9321317	18	2.4	18	85	7	54	22	40	0	36	1.54
9325105--9325162	19	2.9	21	69	10	57	37	24	20	17	1.93
9325103--9325165	21	3.1	21	70	9	67	38	22	20	19	1.94
9325535--9325592	15	3.8	15	88	2	89	51	12	0	36	1.39
9326869--9326913	5	9.0	5	100	0	90	60	0	0	40	0.97
9327051--9327096	19	2.2	21	77	11	51	41	15	2	41	1.59
9327975--9328008	15	2.3	15	94	0	59	14	11	20	52	1.73
9332002--9332249	90	2.8	89	79	6	250	28	14	21	35	1.93
9333994--9334052	10	5.9	10	76	7	66	20	10	3	66	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182