genome.fa.s21.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  2  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389139--389351	27	7.6	27	85	9	264	26	14	28	31	1.94
389139--389351	55	3.8	55	91	4	291	26	14	28	31	1.94
397282--397359	29	2.7	28	84	11	104	25	14	30	29	1.94
397312--397639	174	1.9	174	96	0	611	30	14	24	31	1.94
399533--399578	20	2.3	20	82	14	60	28	28	17	26	1.98
399545--399588	19	2.2	20	84	4	54	34	25	18	22	1.96
401007--401061	25	2.3	22	76	14	56	63	0	34	1	1.05
403027--403065	20	1.9	20	89	5	60	10	23	15	51	1.73
404766--404943	27	6.6	27	80	3	160	28	29	16	25	1.97
404787--404942	82	1.9	81	84	3	206	28	29	16	25	1.97
407644--407678	17	2.1	17	100	0	70	40	11	5	42	1.65
410740--410922	40	4.6	39	81	6	170	24	20	27	26	1.99
410776--410957	79	2.3	80	79	3	190	26	20	27	25	1.99
416160--416337	88	2.0	88	98	0	347	24	17	23	34	1.96
418695--418997	40	7.6	40	90	2	387	24	20	28	27	1.99
424406--424814	206	2.0	206	92	1	676	29	23	13	33	1.93
427165--427240	38	2.0	38	97	0	143	32	10	5	51	1.59
431947--431978	14	2.1	16	88	11	50	46	0	15	37	1.46
434547--435575	343	3.0	343	96	0	1871	29	12	22	35	1.90
441775--441899	47	2.7	46	80	7	137	21	28	21	28	1.99
443837--443870	18	1.9	18	88	5	52	32	5	0	61	1.20
447303--447527	49	4.7	49	72	10	189	25	19	31	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447496--447566	34	2.1	34	81	5	81	26	18	29	25	1.98
448656--448751	40	2.4	41	89	1	140	18	21	42	16	1.89
467495--467680	73	2.5	73	91	1	302	33	18	19	28	1.96
469001--469048	22	2.1	23	84	3	62	72	2	4	20	1.11
469103--469178	37	2.1	37	92	0	125	5	40	39	14	1.68
469103--469152	13	4.0	13	74	10	59	2	42	42	14	1.56
469693--469739	20	2.3	20	83	16	62	34	0	2	63	1.06
469694--469739	21	2.3	21	85	14	62	34	0	2	63	1.07
469778--469808	13	2.3	14	94	5	55	41	0	6	51	1.27
469890--469921	12	2.7	12	95	0	55	37	0	0	62	0.95
470068--470110	21	2.1	20	86	4	59	34	11	4	48	1.60
471149--471254	43	2.5	43	98	0	203	9	26	34	29	1.88
475335--475489	42	3.7	42	84	5	168	29	15	25	29	1.96
475661--475690	15	1.9	16	93	6	53	33	0	26	40	1.57
485976--486054	29	2.7	29	86	5	106	27	32	15	24	1.95
493542--493736	47	4.1	47	86	3	223	34	9	28	27	1.88
493569--493644	23	3.2	25	62	24	63	28	13	34	23	1.92
493658--493766	48	2.3	48	95	0	191	37	6	26	29	1.81
507396--507611	108	2.0	108	89	1	335	27	14	21	36	1.93
513369--513654	29	9.9	29	97	0	502	24	33	16	25	1.96
515030--515075	22	2.1	22	87	0	65	39	2	13	45	1.55
521922--522015	32	2.9	32	77	1	98	35	22	9	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522008--522103	29	3.3	29	88	0	129	27	28	9	35	1.88
522008--522261	62	4.2	58	79	11	163	27	26	14	31	1.95
522081--522258	31	5.7	31	87	0	257	27	26	17	28	1.98
522052--522258	62	3.4	62	87	4	260	27	26	16	29	1.97
528612--528656	18	2.8	17	77	16	51	40	0	0	60	0.97
531477--531511	16	2.1	18	89	10	56	5	11	0	82	0.82
535678--535885	86	2.4	86	93	0	353	20	12	19	47	1.82
535967--536073	44	2.4	44	82	3	153	36	13	19	30	1.90
550928--550953	12	2.2	12	100	0	52	34	15	23	26	1.94
551789--551817	14	2.0	15	93	6	51	27	0	20	51	1.47
552956--553064	56	1.9	56	81	7	132	24	14	27	33	1.95
571031--571098	21	3.2	21	95	0	118	16	32	22	29	1.95
572129--572164	17	2.1	17	100	0	72	61	0	11	27	1.30
578734--578780	25	1.9	24	86	4	67	63	2	2	31	1.18
578916--578969	3	17.7	3	83	7	65	62	1	1	33	1.16
582428--582575	46	3.2	46	91	0	226	50	10	6	33	1.61
585653--585680	14	2.0	14	100	0	56	21	42	14	21	1.88
587165--587458	45	6.5	45	73	7	148	43	15	20	20	1.88
587342--587458	46	2.5	46	83	0	126	49	14	20	15	1.79
587847--587897	26	2.0	26	100	0	102	43	5	27	23	1.77
590656--590737	26	3.2	26	92	0	146	32	7	24	35	1.83
597146--597217	35	2.1	35	86	0	99	27	2	25	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597267--597422	34	4.8	33	76	14	146	37	0	18	43	1.55
597295--597344	25	2.0	24	88	3	73	32	2	24	42	1.66
597270--597422	66	2.4	66	85	7	206	35	0	18	44	1.55
597405--597451	24	2.0	24	82	0	58	29	4	10	55	1.53
600124--600157	15	2.4	14	90	5	50	20	0	32	47	1.51
600137--600257	7	17.0	7	68	10	57	23	0	33	42	1.54
600887--600925	15	2.6	16	80	12	55	74	2	0	23	0.94
605280--605411	46	2.9	46	88	2	176	33	4	25	36	1.77
605280--605409	23	5.7	23	78	10	131	33	4	25	36	1.77
606543--606719	56	3.2	56	64	25	147	50	6	6	36	1.54
606517--606746	112	2.1	112	99	0	451	50	5	6	36	1.53
611200--611241	20	2.1	20	86	0	57	61	2	0	35	1.09
617188--617227	9	4.2	9	81	12	53	32	0	5	62	1.17
617122--617227	20	5.2	20	67	26	62	33	1	7	56	1.38
617277--617322	24	1.9	24	86	0	65	41	8	4	45	1.55
617625--617680	25	2.3	24	79	14	62	37	16	3	42	1.65
627833--629647	75	24.3	75	91	3	2353	32	15	17	33	1.92
629622--629878	93	2.9	89	79	9	272	29	18	18	33	1.95
634576--634600	12	2.1	12	100	0	50	52	0	16	32	1.44
634899--634964	12	5.6	12	72	16	50	56	4	3	36	1.35
637032--637113	42	1.9	43	82	2	103	21	23	17	37	1.93
647590--647725	3	45.0	3	67	16	50	58	5	3	32	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651625--651658	17	2.0	17	88	0	50	73	8	0	17	1.08
651825--651851	13	2.1	13	100	0	54	70	0	0	29	0.88
651808--651889	9	8.7	9	70	18	51	64	0	2	32	1.07
657826--657852	8	3.4	8	100	0	54	25	14	11	48	1.77
664800--664920	25	4.8	24	86	4	134	37	20	23	19	1.94
664800--664921	50	2.4	50	84	0	154	36	20	23	18	1.95
665060--665112	19	2.6	21	74	22	58	50	13	3	32	1.59
674813--674856	18	2.5	17	82	7	52	18	43	25	13	1.86
676397--676426	15	1.9	16	93	6	53	73	6	13	6	1.24
678438--678479	15	2.8	15	88	0	66	42	2	14	40	1.58
678901--678927	13	2.1	13	100	0	54	37	14	7	40	1.74
684121--684151	16	2.0	15	93	6	53	83	0	0	16	0.64
691444--691477	16	2.1	16	100	0	68	35	17	17	29	1.93
696007--696125	19	6.2	19	90	9	188	36	10	16	36	1.83
696635--696683	26	2.0	24	84	8	62	20	6	6	67	1.35
699352--699429	37	2.1	38	85	2	104	28	29	16	25	1.97
699548--699662	47	2.4	47	86	0	158	27	31	8	32	1.87
705237--705297	1	61.0	1	73	0	50	86	0	9	3	0.67
705237--705296	6	10.7	6	82	12	74	86	0	10	3	0.67
706185--707033	88	9.6	88	96	0	1518	30	19	24	25	1.98
707635--707922	47	6.1	47	94	1	486	28	30	9	31	1.88
707635--707922	96	3.0	94	93	2	486	28	30	9	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707635--707922	143	2.0	141	93	1	495	28	30	9	31	1.88
713488--713548	1	61.0	1	73	0	50	86	0	9	3	0.67
713488--713547	6	10.7	6	82	12	74	86	0	10	3	0.67
714436--715200	88	8.7	88	81	8	663	30	18	24	26	1.98
714526--714956	132	3.3	132	94	0	736	30	18	24	25	1.98
714436--715175	220	3.4	219	88	3	960	30	18	24	26	1.98
714527--715196	132	5.1	130	89	4	692	30	18	24	26	1.98
718994--719032	18	2.1	19	90	4	62	74	12	0	12	1.08
722844--722985	43	3.3	43	88	3	205	28	29	16	25	1.97
723043--723170	60	2.0	63	88	7	190	46	4	5	42	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182