genome.fa.s21.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  175  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53208853--53208906	20	2.8	19	77	2	54	31	3	1	62	1.23
53209066--53209224	81	2.0	81	81	6	187	32	9	15	42	1.79
53214979--53215017	20	2.0	20	85	10	53	64	0	0	35	0.94
53217512--53217589	24	3.2	23	77	15	77	35	23	28	12	1.91
53217524--53217589	24	2.7	24	86	9	89	37	22	27	12	1.90
53217636--53217697	27	2.3	27	100	0	124	32	19	27	20	1.97
53218186--53218213	11	2.5	11	100	0	56	53	7	0	39	1.28
53218378--53218413	18	1.9	19	88	5	56	36	2	2	58	1.27
53220166--53220219	27	2.0	27	96	0	99	11	31	33	24	1.90
53220844--53220885	22	1.9	22	85	0	57	23	11	0	64	1.27
53222002--53222041	17	2.2	18	91	8	64	32	0	0	67	0.91
53222013--53222051	18	2.2	17	86	4	51	28	2	0	69	1.02
53222009--53222070	26	2.4	27	81	8	74	32	1	0	66	1.02
53222075--53222107	17	1.9	17	93	0	57	42	0	0	57	0.98
53222056--53222111	29	1.9	28	86	13	78	41	0	1	57	1.09
53226177--53226239	32	2.0	31	100	0	117	38	6	28	25	1.80
53232523--53232707	46	4.0	46	89	1	273	28	24	9	37	1.87
53233931--53233979	17	2.9	17	90	3	73	51	18	0	30	1.47
53245769--53245972	102	2.0	102	85	3	277	30	17	14	37	1.90
53246360--53246774	138	3.0	138	100	0	830	39	9	15	35	1.80
53249800--53249864	17	3.8	16	71	18	51	67	3	3	26	1.20
53249799--53249867	25	2.7	25	81	4	75	68	2	2	26	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53249800--53249883	25	3.1	27	75	13	66	65	2	4	27	1.25
53249879--53249928	24	2.1	24	81	3	57	60	6	0	34	1.21
53256588--53256617	15	2.0	15	100	0	60	13	13	20	53	1.72
53262006--53262060	27	2.0	27	96	0	101	21	25	14	38	1.92
53265881--53265912	3	10.7	3	100	0	64	68	0	0	31	0.90
53273132--53273169	12	3.2	12	85	3	51	68	2	15	13	1.32
53273918--53274093	88	2.0	88	97	0	334	27	19	29	23	1.98
53276260--53276326	24	2.8	23	77	4	71	41	2	37	17	1.65
53277427--53277495	31	2.3	31	87	2	104	55	30	1	13	1.47
53278249--53278454	103	2.0	103	99	0	403	26	27	20	25	1.99
53287636--53287726	29	3.1	28	80	6	83	49	9	4	36	1.56
53288795--53288978	90	2.1	89	84	3	235	39	21	7	31	1.82
53288939--53288990	23	2.3	22	83	9	61	51	19	5	23	1.67
53288951--53289001	23	2.2	23	100	0	102	52	19	3	23	1.62
53289146--53289184	18	2.2	17	86	13	53	15	7	0	76	0.99
53292376--53292404	8	3.6	8	100	0	58	51	0	0	48	1.00
53297326--53297372	14	3.4	14	72	21	53	17	27	21	34	1.95
53299501--53299532	10	3.0	11	90	9	57	37	0	9	53	1.34
53300013--53300065	28	1.9	27	85	11	72	24	7	3	64	1.37
53302234--53302318	28	3.0	27	70	20	66	42	1	2	54	1.21
53327108--53327141	16	2.1	16	94	0	59	41	2	5	50	1.42
53332303--53332365	30	2.1	29	85	2	81	34	9	7	47	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53332777--53332843	21	3.1	21	70	16	64	44	0	43	10	1.38
53332773--53332859	44	2.0	41	91	6	138	41	0	43	13	1.44
53333633--53333881	124	2.0	126	90	1	394	27	15	23	34	1.94
53335581--53335609	11	2.6	11	100	0	58	44	6	27	20	1.77
53340052--53340086	15	2.3	15	90	5	52	34	2	5	57	1.37
53341571--53341692	23	5.3	23	83	0	154	22	18	24	33	1.97
53341571--53341692	46	2.7	46	90	0	181	22	18	24	33	1.97
53343355--53343533	46	4.0	46	95	2	310	28	22	16	32	1.96
53343507--53343558	25	2.1	25	100	0	104	34	13	23	28	1.92
53343461--53343604	71	2.0	71	98	0	279	31	18	18	31	1.94
53343532--53343676	46	3.2	46	94	1	256	30	20	15	33	1.93
53343415--53343650	117	2.0	117	97	0	445	31	19	16	32	1.94
53343372--53343676	163	1.9	161	95	1	547	30	20	16	32	1.95
53356047--53356082	17	2.1	17	100	0	72	66	11	5	16	1.40
53358221--53358287	30	2.2	30	84	5	82	26	17	25	29	1.98
53358225--53358386	66	2.5	66	82	2	182	29	16	24	30	1.96
53361096--53361134	19	2.1	19	85	9	53	53	15	7	23	1.67
53371116--53371165	20	2.4	22	76	6	59	60	6	4	30	1.39
53373203--53373254	16	3.4	16	69	15	56	34	0	9	55	1.32
53374235--53374262	12	2.3	12	100	0	56	46	14	10	28	1.78
53374541--53374585	24	2.0	24	86	8	67	33	8	6	51	1.59
53384968--53385022	26	2.3	23	78	12	58	38	18	12	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53392278--53392430	15	10.3	15	70	8	62	17	9	57	15	1.64
53392282--53392430	45	3.3	45	79	4	167	17	9	58	14	1.62
53392293--53392418	30	4.2	30	71	4	92	19	10	57	12	1.64
53393782--53393833	22	2.4	22	76	0	59	55	11	15	17	1.68
53408569--53408622	28	1.9	28	92	0	90	38	5	5	50	1.49
53417955--53417981	12	2.2	12	100	0	54	33	7	7	51	1.58
53418195--53418233	20	2.0	20	89	0	60	2	38	2	56	1.27
53421700--53421739	18	2.2	18	86	0	53	62	5	2	30	1.29
53422289--53422353	16	4.0	16	74	9	60	56	4	23	15	1.57
53429793--53429817	13	1.9	13	100	0	50	48	20	0	32	1.50
53432086--53432129	16	2.6	16	85	7	52	25	2	20	52	1.58
53437885--53437915	16	1.9	16	93	0	53	41	22	0	35	1.54
53438474--53438507	15	2.3	15	89	0	50	67	0	2	29	1.05
53439148--53439185	18	2.1	18	85	9	51	47	7	10	34	1.67
53441695--53441802	44	2.4	44	87	3	144	29	23	13	33	1.93
53447656--53447717	18	3.4	17	71	20	54	29	1	4	64	1.23
53449150--53449180	6	5.2	6	100	0	62	19	64	16	0	1.29
53449814--53449865	20	2.5	20	81	3	59	26	5	5	61	1.42
53454169--53454292	30	4.1	30	92	1	194	43	6	23	26	1.78
53454175--53454282	15	7.2	15	66	12	69	44	7	21	26	1.78
53458866--53458973	15	7.2	15	69	12	78	44	7	21	26	1.78
53458860--53458983	30	4.1	30	91	1	194	43	6	23	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53470605--53470647	19	2.3	19	87	0	59	39	2	6	51	1.42
53475452--53475508	19	2.8	21	79	17	66	52	1	1	43	1.21
53475842--53475874	12	2.8	12	100	0	66	24	39	9	27	1.85
53476555--53476704	43	3.5	43	83	0	174	32	27	16	24	1.96
53476745--53476777	16	2.2	15	89	10	50	57	0	3	39	1.14
53482718--53482749	14	2.3	14	100	0	64	40	9	6	43	1.62
53487056--53487089	14	2.4	14	90	9	52	29	44	2	23	1.68
53487066--53487107	15	2.9	15	85	3	50	33	45	2	19	1.63
53487053--53487120	22	3.1	21	74	14	57	33	39	1	25	1.65
53487319--53487414	44	2.2	43	81	9	115	34	41	1	22	1.61
53487406--53487455	15	3.5	15	78	8	59	38	34	0	28	1.57
53487814--53487889	40	1.9	40	83	5	100	35	28	14	21	1.92
53488325--53488563	72	3.3	71	90	2	365	54	15	6	23	1.63
53493595--53493650	5	11.4	5	78	12	55	83	0	14	1	0.72
53493595--53493650	22	2.5	20	83	13	67	83	0	14	1	0.72
53493916--53494136	108	2.1	107	86	4	302	26	16	7	49	1.73
53495005--53495256	88	2.9	88	83	1	317	32	25	20	21	1.98
53495709--53495816	44	2.5	44	84	0	135	33	18	18	29	1.95
53497099--53497399	151	2.0	150	97	1	568	34	10	10	44	1.73
53498835--53498868	18	1.9	17	94	5	59	41	11	11	35	1.78
53501716--53501777	23	2.6	24	80	7	65	43	8	6	41	1.60
53509974--53510061	40	2.2	39	80	9	97	71	9	9	10	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53510941--53510993	7	7.4	7	82	18	65	69	0	15	15	1.19
53510944--53510984	8	5.5	8	88	11	61	75	0	12	12	1.05
53510945--53510975	13	2.3	13	94	5	53	74	0	12	12	1.08
53510941--53510993	21	2.5	21	93	3	88	69	0	15	15	1.19
53512298--53512553	50	5.1	50	68	7	169	32	23	20	23	1.98
53512283--53512553	100	2.7	100	87	1	382	31	23	20	24	1.98
53513997--53514038	17	2.5	17	88	0	66	35	4	0	59	1.19
53530250--53530301	24	2.2	24	89	0	77	55	9	1	32	1.43
53530476--53530506	14	2.2	14	100	0	62	29	25	0	45	1.54
53536474--53536546	36	2.0	35	87	10	103	45	10	10	32	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182