genome.fa.s21.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  173  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52738216--52738276	27	2.2	28	88	5	97	47	0	13	39	1.42
52740605--52740829	114	2.0	114	97	0	423	32	8	17	42	1.79
52742035--52742134	52	1.9	52	93	0	173	36	15	22	27	1.93
52742108--52742217	37	3.0	37	89	2	170	35	15	23	25	1.94
52743473--52743714	49	4.9	49	94	0	394	23	14	29	31	1.95
52746687--52746867	36	5.0	36	98	0	344	38	12	19	29	1.88
52751095--52751143	25	2.0	25	91	0	80	57	8	12	22	1.61
52751703--52751729	11	2.5	11	100	0	54	40	0	0	59	0.98
52753445--52753589	21	7.0	21	63	13	75	22	17	22	37	1.93
52753441--52753613	83	2.1	83	93	0	292	23	17	21	37	1.94
52756522--52756657	45	3.1	45	88	2	177	30	25	19	24	1.98
52758268--52758310	18	2.4	19	80	11	54	53	6	2	37	1.41
52767354--52767378	10	2.5	10	100	0	50	20	28	0	52	1.47
52768219--52768244	11	2.4	11	100	0	52	92	0	7	0	0.39
52770066--52770112	23	2.0	23	95	0	85	51	14	4	29	1.62
52772324--52772366	19	2.3	19	87	0	59	79	11	4	4	1.04
52772333--52772369	19	1.9	19	94	0	65	78	10	2	8	1.06
52772815--52772860	6	7.8	6	83	11	60	82	0	15	2	0.76
52773140--52773226	45	1.9	45	83	4	113	29	14	8	47	1.73
52773700--52773766	21	3.2	21	95	0	116	28	26	25	19	1.99
52773831--52774058	89	2.6	89	85	0	312	30	22	20	25	1.98
52774040--52774509	88	5.3	88	84	2	568	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52774107--52774242	44	3.1	44	67	8	132	29	23	20	26	1.99
52773919--52774509	176	3.4	176	81	3	616	30	20	22	26	1.98
52774092--52774225	44	3.0	45	64	8	112	29	19	23	28	1.98
52774716--52775017	44	6.7	44	72	12	168	31	20	20	28	1.97
52774948--52775039	44	2.1	44	81	4	105	31	18	17	32	1.94
52776807--52776856	26	1.9	26	84	8	66	28	14	8	50	1.70
52777271--52777514	127	1.9	127	81	6	298	32	17	15	34	1.91
52785842--52785886	24	1.9	23	86	13	65	31	2	4	62	1.27
52789011--52789074	21	3.0	21	90	4	92	31	20	26	21	1.98
52794950--52795024	19	3.9	19	72	10	64	17	22	26	33	1.96
52794944--52795023	38	2.1	38	88	0	115	17	20	27	35	1.95
52799433--52799550	57	2.1	58	86	1	166	28	20	6	44	1.77
52804104--52804272	27	6.3	27	80	2	187	45	20	15	18	1.85
52804100--52804272	54	3.2	53	83	6	215	45	20	15	18	1.85
52804100--52804272	81	2.1	81	85	0	238	45	20	15	18	1.85
52804291--52804355	25	2.5	26	80	9	71	27	9	21	41	1.83
52805694--52805728	17	2.0	18	94	5	63	48	11	22	17	1.79
52812312--52812369	26	2.2	26	84	0	71	25	15	17	41	1.89
52815143--52815167	13	1.9	13	100	0	50	56	16	16	12	1.68
52819424--52819467	20	2.1	21	84	12	56	43	18	4	34	1.70
52823354--52823406	23	2.3	23	81	18	74	24	18	26	30	1.98
52826207--52826236	15	2.0	15	93	0	51	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52830732--52830840	57	1.9	57	96	0	200	18	21	30	30	1.97
52834087--52834352	115	2.4	105	78	11	318	56	15	1	26	1.49
52834463--52834515	22	2.4	22	84	9	63	0	37	0	62	0.96
52834463--52834515	11	4.7	11	77	9	54	0	37	0	62	0.96
52834592--52834650	27	2.2	27	96	0	109	23	25	27	23	2.00
52834851--52834907	29	2.0	29	92	0	96	29	19	7	43	1.77
52839667--52839743	29	2.6	29	83	4	91	49	15	11	23	1.77
52840880--52840958	37	2.1	37	88	0	113	25	30	18	25	1.98
52841081--52841481	47	8.3	47	90	3	550	29	29	9	31	1.88
52848080--52848190	18	6.2	18	79	0	132	34	13	21	30	1.92
52848076--52848186	36	3.1	36	82	0	150	34	13	20	31	1.92
52854383--52854427	24	1.9	23	86	13	65	31	2	4	62	1.27
52857223--52857464	50	4.7	50	82	7	231	23	26	21	28	1.99
52858417--52858464	17	2.9	17	90	3	71	27	0	18	54	1.44
52865805--52865852	10	4.9	10	76	2	53	66	2	6	25	1.26
52871304--52871339	15	2.5	14	86	8	54	44	8	0	47	1.33
52873522--52874357	462	1.8	459	79	3	989	28	24	18	28	1.98
52878235--52878303	31	2.3	30	78	14	79	43	11	10	34	1.75
52878280--52878348	31	2.4	27	77	13	75	43	13	7	36	1.71
52879540--52879649	26	4.6	23	65	21	66	40	4	12	42	1.63
52879508--52879646	70	2.0	70	100	0	278	41	4	11	42	1.61
52885426--52885465	16	2.3	18	83	12	57	70	5	0	25	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52892082--52892140	26	2.2	27	88	11	95	52	0	8	38	1.32
52892078--52892142	27	2.4	28	92	7	107	50	0	9	40	1.34
52892624--52892665	16	2.6	16	92	0	66	42	7	2	47	1.43
52892639--52892700	23	2.7	23	82	2	72	48	1	1	48	1.21
52893030--52893100	31	2.3	29	82	15	90	50	1	8	39	1.41
52894717--52894751	17	2.1	17	89	10	54	28	11	0	60	1.32
52895268--52895571	109	2.8	109	88	1	452	32	16	18	32	1.93
52898320--52898964	134	4.8	136	79	9	661	21	18	17	41	1.90
52898259--52899110	267	3.2	265	83	5	901	22	18	16	41	1.90
52902551--52902588	16	2.4	16	90	0	58	34	23	0	42	1.55
52903203--52903229	14	1.9	14	100	0	54	29	0	0	70	0.88
52905884--52905932	7	7.0	7	84	15	66	69	0	16	14	1.19
52907217--52907479	44	5.9	44	82	5	307	30	12	23	33	1.92
52907217--52907479	88	3.0	88	88	3	377	30	12	23	33	1.92
52908815--52908853	12	3.2	12	82	17	53	30	7	0	61	1.24
52908900--52908950	22	2.4	21	80	3	66	41	9	1	47	1.48
52909259--52909340	40	2.1	38	84	4	101	31	15	3	48	1.63
52910332--52910386	21	2.7	20	83	5	65	67	1	3	27	1.17
52910475--52910529	10	5.5	10	77	14	51	60	1	7	30	1.35
52910483--52910557	24	3.4	22	79	13	75	52	2	5	40	1.38
52915949--52916018	26	2.7	26	80	4	79	31	25	22	20	1.98
52916166--52916315	27	5.6	27	82	7	180	21	18	16	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52921735--52921783	9	5.4	9	85	0	62	42	16	10	30	1.81
52921782--52921855	37	2.0	37	94	0	130	45	16	5	32	1.70
52921791--52921873	37	2.2	36	83	10	105	48	15	4	31	1.66
52922049--52922082	13	2.7	13	95	4	61	11	0	47	41	1.40
52924715--52924802	44	2.0	44	90	0	140	40	31	13	13	1.84
52925099--52925139	11	3.5	11	81	12	55	34	24	7	34	1.83
52925099--52925147	24	2.0	24	100	0	98	32	26	8	32	1.86
52925110--52925147	13	3.1	13	77	14	53	31	28	7	31	1.86
52925304--52925804	100	5.0	100	90	1	745	29	21	24	24	1.99
52925309--52925678	50	7.4	50	66	7	230	29	21	25	23	1.99
52925304--52925804	199	2.5	201	89	1	747	29	21	24	24	1.99
52925808--52925947	45	3.1	45	72	6	149	29	22	22	26	1.99
52925804--52925934	44	3.0	45	71	7	133	29	22	20	27	1.98
52925808--52925963	45	3.5	45	72	5	145	30	21	22	25	1.98
52925804--52925994	89	2.2	89	81	2	215	31	20	22	24	1.98
52926073--52926173	44	2.3	44	94	0	175	33	14	25	25	1.95
52926637--52926724	44	2.0	44	90	0	140	40	31	13	13	1.84
52930949--52930988	20	2.0	20	100	0	80	30	25	15	30	1.95
52942894--52942928	17	2.1	17	89	10	54	51	17	0	31	1.45
52949170--52949210	11	3.5	11	81	12	55	34	24	7	34	1.83
52949170--52949218	24	2.0	24	100	0	98	32	26	8	32	1.86
52949181--52949218	13	3.1	13	77	14	53	31	28	7	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52949433--52949815	50	7.7	50	68	5	218	29	21	23	26	1.99
52949375--52949875	100	5.0	100	89	1	727	29	21	23	24	1.99
52949426--52949880	50	9.1	50	67	3	207	29	21	24	25	1.99
52949893--52950034	45	3.2	45	73	6	144	28	21	23	25	1.99
52949882--52950065	89	2.1	89	81	2	208	31	21	22	25	1.98
52950144--52950244	44	2.3	44	87	0	139	33	12	25	27	1.93
52950708--52950795	44	2.0	44	90	0	140	40	31	13	13	1.84
52951135--52951179	10	4.6	9	82	17	54	15	2	0	82	0.77
52951246--52951447	101	2.0	101	99	0	395	18	24	37	19	1.94
52957692--52957910	108	2.0	108	85	5	291	17	28	15	37	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182